Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010065D02.5.5 |
| Conread position: | 46-713 |
| Cow position: | chr21:39153003-39152363 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 63 |
| Conread position: | 46-713 |
| Cow position: | chr21:40604841-40605481 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 83 |
| Conread position: | 46-713 |
| Cow position: | chr21:40639740-40639091 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 83 |
| Conread position: | 46-713 |
| Cow position: | chr21:40655209-40654569 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 66 |
| Conread position: | 46-713 |
| Cow position: | chr21:40677263-40676614 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 46-713 |
| Cow position: | chr21:40705409-40704769 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 63 |
| Conread position: | 214-496 |
| Cow position: | chr21:39175677-39175394 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 225-720 |
| Cow position: | chr21:39199258-39198768 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 276, 58 |
| Conread position: | 227-709 |
| Cow position: | chr21:39247705-39248181 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 306 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 230-713 |
| Cow position: | chr21:39304885-39305365 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 43 |
| Conread position: | 231-713 |
| Cow position: | chr21:38962547-38962065 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 712-922 |
| Cow position: | chr21:40607405-40607612 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 712-988 |
| Cow position: | chr21:39149955-39149682 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 712-988 |
| Cow position: | chr21:40637247-40636971 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 712-988 |
| Cow position: | chr21:40652739-40652466 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 712-988 |
| Cow position: | chr21:40674986-40674713 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 712-988 |
| Cow position: | chr21:40702935-40702662 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 974-1141 |
| Cow position: | chr21:39148563-39148399 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 974-1141 |
| Cow position: | chr21:40650871-40650707 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 974-1141 |
| Cow position: | chr21:40701539-40701375 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 983-1140 |
| Cow position: | chr21:40626536-40626379 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 983-1140 |
| Cow position: | chr21:40672640-40672483 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 133, 143 |
| Conread position: | 983-1141 |
| Cow position: | chr21:40610212-40610370 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 983-1141 |
| Cow position: | chr21:40634374-40634216 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 133, 148 |
| Conread position: | 1128-1497 |
| Cow position: | chr21:40649659-40649287 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 298 |
| Conread position: | 1128-1549 |
| Cow position: | chr21:39147359-39146938 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 99 |
| Conread position: | 1128-1549 |
| Cow position: | chr21:40700330-40699908 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 99 |
| Conread position: | 1136-1416 |
| Cow position: | chr21:40671456-40671184 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 212 |
| Conread position: | 1136-1550 |
| Cow position: | chr21:40611952-40612363 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 50 |
| Conread position: | 1136-1558 |
| Cow position: | chr21:40633161-40632732 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 362 |
Show alignments to all cow chromosomes.