Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010066E04.5.5 |
| Conread position: | 75-740 |
| Cow position: | chr21:40604841-40605479 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 78 |
| Conread position: | 75-740 |
| Cow position: | chr21:40677263-40676616 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 75-749 |
| Cow position: | chr21:40639740-40639084 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 78 |
| Conread position: | 186-740 |
| Cow position: | chr21:39152913-39152365 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 186-740 |
| Cow position: | chr21:40655119-40654571 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 186-740 |
| Cow position: | chr21:40705319-40704771 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 237-747 |
| Cow position: | chr21:38962570-38962060 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 59 |
| Conread position: | 250-740 |
| Cow position: | chr21:39304876-39305363 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 52 |
| Conread position: | 250-749 |
| Cow position: | chr21:39199263-39198768 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 328 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 6, 63 |
| Conread position: | 254-525 |
| Cow position: | chr21:39175665-39175394 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 256-738 |
| Cow position: | chr21:39247705-39248181 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 715-1016 |
| Cow position: | chr21:40675010-40674714 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 742-951 |
| Cow position: | chr21:40607406-40607612 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 742-1016 |
| Cow position: | chr21:39149954-39149683 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 742-1016 |
| Cow position: | chr21:40652738-40652467 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 742-1016 |
| Cow position: | chr21:40702934-40702663 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 746-1016 |
| Cow position: | chr21:40637242-40636972 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1003-1171 |
| Cow position: | chr21:39148563-39148398 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1003-1171 |
| Cow position: | chr21:40650871-40650706 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1003-1171 |
| Cow position: | chr21:40701539-40701374 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1012-1169 |
| Cow position: | chr21:40626536-40626379 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 147, 138 |
| Conread position: | 1012-1175 |
| Cow position: | chr21:40634374-40634210 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 1020-1171 |
| Cow position: | chr21:40610220-40610371 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1139-1583 |
| Cow position: | chr21:40633187-40632741 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 1156-1536 |
| Cow position: | chr21:40649660-40649281 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 1156-1582 |
| Cow position: | chr21:39147360-39146938 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 96 |
| Conread position: | 1156-1582 |
| Cow position: | chr21:40700331-40699908 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 1166-1375 |
| Cow position: | chr21:40671455-40671243 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1166-1583 |
| Cow position: | chr21:40611953-40612363 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 49 |
| Conread position: | 1455-1583 |
| Cow position: | chr21:40624852-40624723 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
Show alignments to all cow chromosomes.