Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM10031H12.5.5 |
| Conread position: | 36-703 |
| Cow position: | chr21:39153003-39152363 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 60 |
| Conread position: | 36-703 |
| Cow position: | chr21:40604841-40605481 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 85 |
| Conread position: | 36-703 |
| Cow position: | chr21:40655209-40654569 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 64 |
| Conread position: | 36-703 |
| Cow position: | chr21:40677263-40676614 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 36-703 |
| Cow position: | chr21:40705409-40704769 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 60 |
| Conread position: | 36-710 |
| Cow position: | chr21:40639740-40639084 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 85 |
| Conread position: | 66-708 |
| Cow position: | chr21:39247551-39248190 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 391 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 44 |
| Conread position: | 204-581 |
| Cow position: | chr21:39175677-39175299 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 215-710 |
| Cow position: | chr21:39199258-39198768 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 276, 58 |
| Conread position: | 220-703 |
| Cow position: | chr21:39304885-39305365 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 43 |
| Conread position: | 221-708 |
| Cow position: | chr21:38962547-38962060 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 223-703 |
| Cow position: | chr21:38910076-38909596 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 341 |
| Conread position: | 702-912 |
| Cow position: | chr21:40607405-40607612 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 702-971 |
| Cow position: | chr21:39149955-39149689 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 702-971 |
| Cow position: | chr21:40652739-40652473 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 702-971 |
| Cow position: | chr21:40674986-40674720 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 702-971 |
| Cow position: | chr21:40702935-40702669 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 702-973 |
| Cow position: | chr21:40637247-40636976 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 976-1130 |
| Cow position: | chr21:40672637-40672483 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 976-1131 |
| Cow position: | chr21:39148551-39148399 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 976-1131 |
| Cow position: | chr21:40650859-40650707 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 976-1131 |
| Cow position: | chr21:40701527-40701375 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 976-1134 |
| Cow position: | chr21:40626533-40626374 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 976-1136 |
| Cow position: | chr21:40634371-40634210 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 134, 140 |
| Conread position: | 981-1131 |
| Cow position: | chr21:40610220-40610370 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1126-1374 |
| Cow position: | chr21:40633161-40632894 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1126-1375 |
| Cow position: | chr21:40611952-40612216 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 1126-1379 |
| Cow position: | chr21:39147350-39147085 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 84, 100 |
| Conread position: | 1126-1379 |
| Cow position: | chr21:40649650-40649382 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 1126-1379 |
| Cow position: | chr21:40700321-40700055 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 186, 88 |
| Conread position: | 1126-1487 |
| Cow position: | chr21:40671456-40671090 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 204 |
| Conread position: | 1227-1485 |
| Cow position: | chr21:40624996-40624733 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1370-1487 |
| Cow position: | chr21:39147063-39146944 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1370-1487 |
| Cow position: | chr21:40700033-40699914 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.