Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM10144D10.5.5 |
| Conread position: | 47-714 |
| Cow position: | chr21:39153003-39152363 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 47-714 |
| Cow position: | chr21:40604841-40605481 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 85 |
| Conread position: | 47-714 |
| Cow position: | chr21:40655209-40654569 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 47-714 |
| Cow position: | chr21:40677263-40676614 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 47-714 |
| Cow position: | chr21:40705409-40704769 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 47-721 |
| Cow position: | chr21:40639740-40639084 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 215-601 |
| Cow position: | chr21:39175677-39175290 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 226-721 |
| Cow position: | chr21:39199258-39198768 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 312 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 272, 42 |
| Conread position: | 228-719 |
| Cow position: | chr21:39247705-39248190 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 151 |
| Conread position: | 231-714 |
| Cow position: | chr21:39304885-39305365 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 37 |
| Conread position: | 232-719 |
| Cow position: | chr21:38962547-38962060 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 234-714 |
| Cow position: | chr21:38910076-38909596 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 713-923 |
| Cow position: | chr21:40607405-40607612 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 713-991 |
| Cow position: | chr21:39149955-39149680 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 713-991 |
| Cow position: | chr21:40637247-40636969 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 713-991 |
| Cow position: | chr21:40652739-40652464 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 713-991 |
| Cow position: | chr21:40674986-40674711 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 713-991 |
| Cow position: | chr21:40702935-40702660 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 984-1142 |
| Cow position: | chr21:39148554-39148399 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 984-1142 |
| Cow position: | chr21:40610212-40610370 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 984-1142 |
| Cow position: | chr21:40650862-40650707 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 984-1142 |
| Cow position: | chr21:40701530-40701375 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 984-1147 |
| Cow position: | chr21:40634374-40634210 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 133, 148 |
| Conread position: | 998-1145 |
| Cow position: | chr21:40626522-40626374 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 1009-1141 |
| Cow position: | chr21:40672615-40672483 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1137-1322 |
| Cow position: | chr21:40611952-40612136 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1137-1322 |
| Cow position: | chr21:40649650-40649465 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1137-1393 |
| Cow position: | chr21:40633161-40632887 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1137-1518 |
| Cow position: | chr21:39147350-39146939 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 91 |
| Conread position: | 1137-1518 |
| Cow position: | chr21:40700321-40699909 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 91 |
| Conread position: | 1137-1528 |
| Cow position: | chr21:40671456-40671073 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 77, 186 |
Show alignments to all cow chromosomes.