Cow genome map

Conread name: Ss1.1-Liv1-LVRM1B120045.5

Conread position: 1-246
Cow position: chr11:9416502-9416263 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 127

Conread position: 1-283
Cow position: chr11:30186236-30186515 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 124

Conread position: 1-689
Cow position: chr11:10218422-10217757 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 127

Conread position: 1-819
Cow position: chr11:44230245-44231055 (view UCSC Genome Browser custom track)
Alignm length: 832
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 129

Conread position: 6-206
Cow position: chr11:13068694-13068498 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 164, 74

Conread position: 6-206
Cow position: chr11:13161303-13161499 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 164, 74

Conread position: 28-303
Cow position: chr11:38006159-38005883 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 86, 98

Conread position: 33-819
Cow position: chr11:36761260-36762026 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 97

Conread position: 179-805
Cow position: chr11:9660085-9659459 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 410
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 273, 87

Conread position: 181-756
Cow position: chr11:58133669-58134249 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 80

Conread position: 184-805
Cow position: chr11:25526891-25527486 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 399
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 137, 74

Conread position: 185-728
Cow position: chr11:15998207-15998744 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 365
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 56, 47

Conread position: 205-818
Cow position: chr11:42428669-42429274 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 401
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 20, 63

Conread position: 220-783
Cow position: chr11:33044787-33044216 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 368
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 69, 43

Conread position: 220-792
Cow position: chr11:28055265-28054685 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 370
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 76, 41

Conread position: 220-792
Cow position: chr11:57628718-57628131 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 373
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 66, 28

Conread position: 220-792
Cow position: chr11:72110630-72110050 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 35

Conread position: 220-795
Cow position: chr11:37492315-37491725 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 390
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 61, 35

Conread position: 220-805
Cow position: chr11:9158085-9157505 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 372
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 232, 41

Conread position: 220-805
Cow position: chr11:19064921-19064321 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 65

Conread position: 220-805
Cow position: chr11:20921417-20920817 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 34

Conread position: 220-805
Cow position: chr11:67847238-67846643 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 65

Conread position: 220-823
Cow position: chr11:32450196-32450814 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 35

Conread position: 227-827
Cow position: chr11:43731762-43732354 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 31

Conread position: 232-819
Cow position: chr11:53288114-53287513 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 389
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 23, 53

Conread position: 271-643
Cow position: chr11:28050400-28050029 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 246
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 127, 47

Conread position: 271-792
Cow position: chr11:12359044-12358510 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 184

Conread position: 272-792
Cow position: chr11:19103107-19102571 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 343
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 24, 150

Conread position: 272-792
Cow position: chr11:43515250-43514715 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 59

Conread position: 272-804
Cow position: chr11:54209006-54209539 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 347
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 9, 18

Conread position: 272-805
Cow position: chr11:26125549-26125003 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 350
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 24, 127

Conread position: 272-819
Cow position: chr11:41171314-41170750 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 187

Conread position: 272-881
Cow position: chr11:23876683-23877301 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 191

Conread position: 272-881
Cow position: chr11:24392705-24393316 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 398
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 24, 105

Conread position: 273-804
Cow position: chr11:17108302-17107759 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 10

Conread position: 273-805
Cow position: chr11:37477733-37477191 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 10

Conread position: 277-739
Cow position: chr11:75919810-75920275 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 14

Conread position: 282-768
Cow position: chr11:29234249-29233766 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 321
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 84, 21

Conread position: 282-819
Cow position: chr11:85394417-85393869 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 9

Conread position: 283-805
Cow position: chr11:29669236-29668703 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 8

Conread position: 294-730
Cow position: chr11:30125840-30125395 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 285
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 41, 6

Conread position: 295-795
Cow position: chr11:44861122-44860611 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 255

Conread position: 297-819
Cow position: chr11:12351658-12351123 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 127

Conread position: 300-805
Cow position: chr11:1496659-1496146 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 329
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 28, 40

Conread position: 300-805
Cow position: chr11:3492420-3492939 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 158

Conread position: 300-805
Cow position: chr11:8887742-8887230 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 338
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 162

Conread position: 300-805
Cow position: chr11:34020316-34020818 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 333
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 76

Conread position: 309-695
Cow position: chr11:44895598-44895204 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 266
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 14, 25

Conread position: 309-805
Cow position: chr11:21466495-21467005 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 21

Conread position: 309-805
Cow position: chr11:52418810-52419316 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 330
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 12, 21

Conread position: 310-801
Cow position: chr11:8262276-8261779 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 74

Conread position: 311-818
Cow position: chr11:26566295-26565780 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 323
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 140

Conread position: 319-818
Cow position: chr11:30304678-30305174 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 74

Conread position: 329-756
Cow position: chr11:38835978-38835542 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 294
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 25

Conread position: 329-760
Cow position: chr11:44157794-44157353 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 291
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 76, 67

Conread position: 329-792
Cow position: chr11:37093623-37093146 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 313
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 64, 258

Conread position: 329-805
Cow position: chr11:10846883-10847370 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 409

Conread position: 329-805
Cow position: chr11:71329083-71329572 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 50

Conread position: 329-819
Cow position: chr11:4028111-4027621 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 316
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 65, 164

Conread position: 335-778
Cow position: chr11:4271422-4270970 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 66

Conread position: 337-820
Cow position: chr11:9607128-9606635 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 311
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 58, 217

Conread position: 382-779
Cow position: chr11:14730025-14729625 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 273
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 25, 89

Conread position: 382-819
Cow position: chr11:39833251-39833694 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 294
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 19

Conread position: 385-805
Cow position: chr11:61401540-61401123 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 281
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 71, 14

Conread position: 385-805
Cow position: chr11:67449997-67450426 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 277
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 71, 14

Conread position: 385-819
Cow position: chr11:28230249-28229811 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 292
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 71, 14

Conread position: 386-795
Cow position: chr11:45110863-45111287 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 278
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 10

Conread position: 393-805
Cow position: chr11:8282586-8283003 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 278
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 94, 6

Conread position: 406-763
Cow position: chr11:10049644-10050006 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 247
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 32, 51

Conread position: 407-680
Cow position: chr11:17924922-17924640 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 49, 152

Conread position: 418-732
Cow position: chr11:13067479-13067167 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 38

Conread position: 418-732
Cow position: chr11:13162525-13162837 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 38

Conread position: 427-821
Cow position: chr11:44496055-44495651 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 236
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 18, 63

Conread position: 450-823
Cow position: chr11:10089902-10090283 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 65, 13

Conread position: 474-804
Cow position: chr11:66726055-66726389 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 229
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 35, 109

Conread position: 477-798
Cow position: chr11:9415813-9415509 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 65

Conread position: 477-818
Cow position: chr11:30186894-30187231 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 7

Conread position: 478-791
Cow position: chr11:32684882-32685198 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 43, 54

Conread position: 508-805
Cow position: chr11:5343588-5343289 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 83, 234

Conread position: 508-805
Cow position: chr11:64045627-64045926 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 83, 239

Conread position: 509-795
Cow position: chr11:37065493-37065203 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 82, 72

Conread position: 524-783
Cow position: chr11:10210311-10210056 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 146, 36

Conread position: 527-769
Cow position: chr11:3240296-3240537 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 153

Conread position: 528-805
Cow position: chr11:40776893-40776614 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 61, 0

Conread position: 538-805
Cow position: chr11:73476967-73477236 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 209

Conread position: 563-819
Cow position: chr11:48084797-48085052 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 31, 84

Conread position: 588-870
Cow position: chr11:17280584-17280303 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 171

Conread position: 593-805
Cow position: chr11:8519708-8519920 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 84, 138

Conread position: 599-823
Cow position: chr11:9734926-9734702 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 79, 146

Conread position: 603-804
Cow position: chr11:38505878-38505678 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 83, 14

Conread position: 613-832
Cow position: chr11:18073686-18073461 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 73, 126

Conread position: 686-1010
Cow position: chr11:30187187-30187529 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 229
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 22

Conread position: 709-819
Cow position: chr11:30205087-30205192 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 749-1143
Cow position: chr11:36762063-36762455 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 71, 20

Conread position: 812-1111
Cow position: chr11:44231160-44231470 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 15

Conread position: 826-1164
Cow position: chr11:36713432-36713088 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 36

Show alignments to all cow chromosomes.