Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-279 |
| Cow position: | chr13:30261457-30261725 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 20 |
| Conread position: | 1-279 |
| Cow position: | chr13:34047846-34048122 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 109, 124 |
| Conread position: | 1-819 |
| Cow position: | chr13:21130491-21131331 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 608 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 125 |
| Conread position: | 1-819 |
| Cow position: | chr13:22186518-22185731 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 125 |
| Conread position: | 181-805 |
| Cow position: | chr13:33825360-33824741 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 181-805 |
| Cow position: | chr13:35756608-35757235 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 78 |
| Conread position: | 203-795 |
| Cow position: | chr13:34692540-34693149 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 220-774 |
| Cow position: | chr13:30245339-30244771 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 373 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 220-789 |
| Cow position: | chr13:34187293-34186709 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 371 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 220-795 |
| Cow position: | chr13:21840801-21840210 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 220-805 |
| Cow position: | chr13:17307880-17308469 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 35 |
| Conread position: | 220-805 |
| Cow position: | chr13:50108861-50109456 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 220-819 |
| Cow position: | chr13:30657566-30656969 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 221-804 |
| Cow position: | chr13:34911968-34911386 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 222-805 |
| Cow position: | chr13:62328182-62327590 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 39 |
| Conread position: | 233-834 |
| Cow position: | chr13:19438348-19438956 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 272-805 |
| Cow position: | chr13:15521069-15520521 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 272-805 |
| Cow position: | chr13:31612890-31612342 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 501 |
| Conread position: | 272-805 |
| Cow position: | chr13:34042920-34042375 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 273-805 |
| Cow position: | chr13:32986596-32986063 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 273-818 |
| Cow position: | chr13:60701825-60701291 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 273-867 |
| Cow position: | chr13:1593709-1593101 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 280-805 |
| Cow position: | chr13:3276613-3277148 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 282-805 |
| Cow position: | chr13:4872537-4873070 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 346 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 282-805 |
| Cow position: | chr13:34326218-34325681 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 287-805 |
| Cow position: | chr13:2908983-2908455 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 288-716 |
| Cow position: | chr13:33928098-33927665 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 288-788 |
| Cow position: | chr13:9043972-9044478 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 200 |
| Conread position: | 296-819 |
| Cow position: | chr13:31734614-31734077 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 340 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 413 |
| Conread position: | 297-644 |
| Cow position: | chr13:34868242-34868605 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 297-795 |
| Cow position: | chr13:20542890-20542391 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 297-805 |
| Cow position: | chr13:32738348-32737828 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 107 |
| Conread position: | 300-789 |
| Cow position: | chr13:34143183-34142680 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 156 |
| Conread position: | 303-789 |
| Cow position: | chr13:31832082-31832578 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 309-805 |
| Cow position: | chr13:6668639-6668129 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 320 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 311-805 |
| Cow position: | chr13:54284079-54284564 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 320-805 |
| Cow position: | chr13:13324253-13324743 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 329-753 |
| Cow position: | chr13:33336818-33336400 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 127 |
| Conread position: | 329-792 |
| Cow position: | chr13:4940591-4941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 127 |
| Conread position: | 329-795 |
| Cow position: | chr13:34936643-34937131 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 312 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 64, 276 |
| Conread position: | 329-803 |
| Cow position: | chr13:15924878-15924392 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 329-805 |
| Cow position: | chr13:3654806-3654332 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 63, 157 |
| Conread position: | 335-819 |
| Cow position: | chr13:30140504-30141014 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 58 |
| Conread position: | 335-819 |
| Cow position: | chr13:31560704-31561195 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 374-805 |
| Cow position: | chr13:49973231-49973678 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 375-783 |
| Cow position: | chr13:56730728-56730314 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 375-798 |
| Cow position: | chr13:23003965-23003525 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 382-657 |
| Cow position: | chr13:2232220-2232505 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 468-901 |
| Cow position: | chr13:34767625-34767194 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 5 |
| Conread position: | 485-805 |
| Cow position: | chr13:3567449-3567788 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 521-716 |
| Cow position: | chr13:10114943-10114748 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 165 |
| Conread position: | 534-841 |
| Cow position: | chr13:47230266-47229956 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 57, 209 |
| Conread position: | 545-811 |
| Cow position: | chr13:16343482-16343220 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 576-805 |
| Cow position: | chr13:4178888-4178657 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 167 |
| Conread position: | 577-792 |
| Cow position: | chr13:4483563-4483778 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 595-819 |
| Cow position: | chr13:3338570-3338796 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 82, 212 |
| Conread position: | 702-819 |
| Cow position: | chr13:43850269-43850153 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 782-1164 |
| Cow position: | chr13:22185525-22185139 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 787-1081 |
| Cow position: | chr13:21131414-21131712 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 837-1164 |
| Cow position: | chr13:34048383-34048721 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 78 |
| Conread position: | 897-1162 |
| Cow position: | chr13:31556901-31556641 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 169, 34 |
Show alignments to all cow chromosomes.