Cow genome map

Conread name: Ss1.1-Liv1-LVRM1B120045.5

Conread position: 1-324
Cow position: chr16:28439042-28438718 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 215
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 109, 124

Conread position: 1-649
Cow position: chr16:14669024-14669658 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 50

Conread position: 1-835
Cow position: chr16:24155685-24154894 (view UCSC Genome Browser custom track)
Alignm length: 849
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 70

Conread position: 7-194
Cow position: chr16:25293102-25293281 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 163, 105

Conread position: 51-230
Cow position: chr16:23872775-23872595 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 101, 73

Conread position: 88-264
Cow position: chr16:41759049-41758872 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 20, 41

Conread position: 132-581
Cow position: chr16:55080493-55080059 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 311
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 38, 51

Conread position: 181-805
Cow position: chr16:23982219-23982835 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 78

Conread position: 181-805
Cow position: chr16:25458567-25457941 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 407
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 206, 77

Conread position: 186-483
Cow position: chr16:25293511-25293797 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 209
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 196, 30

Conread position: 220-789
Cow position: chr16:15565676-15566252 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 41

Conread position: 220-795
Cow position: chr16:2239804-2239218 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 371
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 35, 72

Conread position: 220-805
Cow position: chr16:6942548-6943156 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 389
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 61, 35

Conread position: 220-819
Cow position: chr16:28171434-28170825 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 41

Conread position: 221-805
Cow position: chr16:5918412-5919007 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 34

Conread position: 221-805
Cow position: chr16:25157290-25156699 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 361
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 52

Conread position: 259-819
Cow position: chr16:25166685-25167201 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 23

Conread position: 270-727
Cow position: chr16:4303496-4303031 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 291
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 16, 29

Conread position: 271-805
Cow position: chr16:12538950-12538401 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 409

Conread position: 272-789
Cow position: chr16:10437233-10437751 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 127

Conread position: 272-799
Cow position: chr16:31592930-31592386 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 60

Conread position: 272-805
Cow position: chr16:2484161-2483618 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 349
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 24, 127

Conread position: 272-805
Cow position: chr16:15491683-15492233 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 63

Conread position: 272-869
Cow position: chr16:25340947-25341551 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 180

Conread position: 273-792
Cow position: chr16:10204438-10203919 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 342
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 23, 191

Conread position: 273-795
Cow position: chr16:28472119-28471587 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 340
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 210

Conread position: 276-792
Cow position: chr16:42740441-42739912 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 326
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 7, 187

Conread position: 280-805
Cow position: chr16:6549536-6549000 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 60

Conread position: 280-805
Cow position: chr16:7905628-7906143 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 336
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 50, 76

Conread position: 280-819
Cow position: chr16:20255322-20254773 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 48

Conread position: 282-680
Cow position: chr16:32605816-32606227 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 257
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 48, 24

Conread position: 291-819
Cow position: chr16:28438787-28438248 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 169

Conread position: 294-785
Cow position: chr16:36232606-36232111 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 328
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 37, 62

Conread position: 294-819
Cow position: chr16:51685441-51685973 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 86

Conread position: 297-681
Cow position: chr16:1430229-1430623 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 255
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 31, 157

Conread position: 300-657
Cow position: chr16:29676301-29675935 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 243
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 29, 309

Conread position: 300-805
Cow position: chr16:5660865-5661374 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 335
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 29, 158

Conread position: 300-805
Cow position: chr16:11052176-11052684 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 102

Conread position: 303-805
Cow position: chr16:36282406-36282921 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 342
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 27, 53

Conread position: 303-819
Cow position: chr16:31757-32276 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 328
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 27, 37

Conread position: 309-792
Cow position: chr16:40297159-40296667 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 326
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 41, 49

Conread position: 309-805
Cow position: chr16:49257548-49257059 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 327
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 202, 37

Conread position: 309-818
Cow position: chr16:25084637-25085158 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 334
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 14, 149

Conread position: 309-861
Cow position: chr16:43898253-43897685 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 368
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 14, 21

Conread position: 327-819
Cow position: chr16:10808200-10808688 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 322
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 79, 66

Conread position: 329-714
Cow position: chr16:16276469-16276074 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 254
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 32, 25

Conread position: 329-805
Cow position: chr16:1568414-1567930 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 25

Conread position: 329-805
Cow position: chr16:8817069-8816580 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 90

Conread position: 329-805
Cow position: chr16:27734769-27734278 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 317
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 64, 0

Conread position: 329-805
Cow position: chr16:29046056-29046546 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 329-818
Cow position: chr16:36362312-36361825 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 329
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 43

Conread position: 329-819
Cow position: chr16:836073-836567 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 15

Conread position: 329-864
Cow position: chr16:15183842-15184385 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 346
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 76, 67

Conread position: 329-881
Cow position: chr16:2411934-2411374 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 361
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 64, 123

Conread position: 330-805
Cow position: chr16:23253467-23252983 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 122

Conread position: 335-795
Cow position: chr16:56551170-56551634 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 314
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 58, 117

Conread position: 347-585
Cow position: chr16:41758409-41758175 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 108, 55

Conread position: 369-644
Cow position: chr16:29091908-29091625 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 24, 202

Conread position: 370-795
Cow position: chr16:34529402-34529835 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 20

Conread position: 375-819
Cow position: chr16:39820720-39821168 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 385-816
Cow position: chr16:335393-335827 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 391-783
Cow position: chr16:9929647-9930042 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 267
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 47, 99

Conread position: 393-798
Cow position: chr16:42051267-42050870 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 267
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 72, 8

Conread position: 405-805
Cow position: chr16:14666715-14666305 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 78

Conread position: 405-805
Cow position: chr16:25187757-25188166 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 272
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 51, 83

Conread position: 406-788
Cow position: chr16:5651868-5652243 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 254
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 50, 94

Conread position: 408-819
Cow position: chr16:5483441-5483861 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 7

Conread position: 464-819
Cow position: chr16:25294019-25294368 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 53

Conread position: 473-820
Cow position: chr16:16029972-16030323 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 243
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 40, 91

Conread position: 494-817
Cow position: chr16:10566074-10565746 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 218
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 17, 135

Conread position: 518-805
Cow position: chr16:9777321-9777609 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 73, 89

Conread position: 522-805
Cow position: chr16:19713645-19713365 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 67, 59

Conread position: 524-819
Cow position: chr16:33611838-33611539 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 202
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 70, 111

Conread position: 528-731
Cow position: chr16:2728055-2727855 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 32

Conread position: 533-805
Cow position: chr16:53045603-53045878 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 157
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 58, 215

Conread position: 595-819
Cow position: chr16:41758134-41757910 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 616-819
Cow position: chr16:13018434-13018638 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 46, 37

Conread position: 679-819
Cow position: chr16:48626632-48626769 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 782-1164
Cow position: chr16:25170571-25170941 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 162, 19

Conread position: 823-1131
Cow position: chr16:28438135-28437823 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 22, 110

Conread position: 828-976
Cow position: chr16:41757252-41757106 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 119, 39

Conread position: 968-1131
Cow position: chr16:41756896-41756733 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 89, 37

Show alignments to all cow chromosomes.