Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-819 |
| Cow position: | chr18:9187248-9186451 (view UCSC Genome Browser custom track) |
| Alignm length: | 836 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 125 |
| Conread position: | 2-273 |
| Cow position: | chr18:46878453-46878187 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 108, 83 |
| Conread position: | 169-805 |
| Cow position: | chr18:19352047-19352695 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 24 |
| Conread position: | 170-805 |
| Cow position: | chr18:33358525-33359175 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 181-788 |
| Cow position: | chr18:35335177-35335772 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 77 |
| Conread position: | 184-819 |
| Cow position: | chr18:47719874-47719260 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 403 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 226, 74 |
| Conread position: | 208-819 |
| Cow position: | chr18:46878279-46877685 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 216-657 |
| Cow position: | chr18:17992863-17992404 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 220-795 |
| Cow position: | chr18:32293487-32294063 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 380 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 220-805 |
| Cow position: | chr18:16078413-16079027 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 382 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 220-805 |
| Cow position: | chr18:22602197-22602797 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 220-805 |
| Cow position: | chr18:43147215-43146616 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 220-805 |
| Cow position: | chr18:47741728-47742328 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 379 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 272-777 |
| Cow position: | chr18:54024595-54024078 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 272-792 |
| Cow position: | chr18:51480600-51481136 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 343 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 272-805 |
| Cow position: | chr18:14415739-14416285 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 180 |
| Conread position: | 272-805 |
| Cow position: | chr18:28974138-28973593 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 272-820 |
| Cow position: | chr18:37504826-37505388 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 280-805 |
| Cow position: | chr18:48221647-48222188 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 502 |
| Conread position: | 282-795 |
| Cow position: | chr18:55089152-55088625 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 288-805 |
| Cow position: | chr18:23944595-23944065 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 209 |
| Conread position: | 291-819 |
| Cow position: | chr18:16393863-16393323 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 280 |
| Conread position: | 294-754 |
| Cow position: | chr18:33953784-33953310 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 294-820 |
| Cow position: | chr18:16533767-16534303 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 297-804 |
| Cow position: | chr18:39748368-39748887 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 77 |
| Conread position: | 297-805 |
| Cow position: | chr18:36508119-36508642 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 123 |
| Conread position: | 297-805 |
| Cow position: | chr18:40478169-40478692 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 157 |
| Conread position: | 297-808 |
| Cow position: | chr18:33268627-33269138 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 345 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 30, 82 |
| Conread position: | 300-739 |
| Cow position: | chr18:43200855-43201298 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 300-805 |
| Cow position: | chr18:6869465-6868949 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 300-805 |
| Cow position: | chr18:51310372-51310895 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 29, 133 |
| Conread position: | 303-805 |
| Cow position: | chr18:2019889-2019375 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 303-805 |
| Cow position: | chr18:11275306-11274796 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 306-792 |
| Cow position: | chr18:16176807-16176317 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 308-805 |
| Cow position: | chr18:51257782-51258293 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 309-718 |
| Cow position: | chr18:1520928-1521351 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 174 |
| Conread position: | 309-795 |
| Cow position: | chr18:33335671-33336162 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 97, 400 |
| Conread position: | 310-717 |
| Cow position: | chr18:16660203-16659796 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 61, 44 |
| Conread position: | 312-823 |
| Cow position: | chr18:44601346-44601847 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 34 |
| Conread position: | 328-805 |
| Cow position: | chr18:23797470-23797957 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 329-804 |
| Cow position: | chr18:53785661-53786148 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 64, 163 |
| Conread position: | 329-805 |
| Cow position: | chr18:41841005-41840515 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 340-819 |
| Cow position: | chr18:51689458-51689948 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 321 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 382-717 |
| Cow position: | chr18:54044825-54044485 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 382-823 |
| Cow position: | chr18:29236694-29237137 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 385-805 |
| Cow position: | chr18:2887141-2886712 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 385-854 |
| Cow position: | chr18:18897382-18897857 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 385-882 |
| Cow position: | chr18:37599646-37599154 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 394-763 |
| Cow position: | chr18:36258465-36258083 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 405-819 |
| Cow position: | chr18:51341586-51342010 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 281 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 437-792 |
| Cow position: | chr18:14130322-14130681 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 455-818 |
| Cow position: | chr18:5980394-5980751 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 35, 108 |
| Conread position: | 508-755 |
| Cow position: | chr18:25350675-25350925 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 508-805 |
| Cow position: | chr18:24040722-24040423 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 83, 235 |
| Conread position: | 515-773 |
| Cow position: | chr18:32652238-32652497 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 521-787 |
| Cow position: | chr18:19539556-19539288 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 528-795 |
| Cow position: | chr18:114424-114689 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 541-819 |
| Cow position: | chr18:46869130-46868865 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 567-819 |
| Cow position: | chr18:16843266-16843017 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 573-795 |
| Cow position: | chr18:18089397-18089173 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 580-819 |
| Cow position: | chr18:36211033-36210795 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 621-792 |
| Cow position: | chr18:27987185-27987357 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 817-1126 |
| Cow position: | chr18:4885144-4884833 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 18 |
Show alignments to all cow chromosomes.