Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-803 |
| Cow position: | chr19:20111710-20110944 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 2-292 |
| Cow position: | chr19:7405895-7405624 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 2-510 |
| Cow position: | chr19:17018008-17018526 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 2-779 |
| Cow position: | chr19:42300000-42299208 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 6-807 |
| Cow position: | chr19:7450468-7449709 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 67 |
| Conread position: | 32-900 |
| Cow position: | chr19:32183899-32183074 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 179-727 |
| Cow position: | chr19:30371970-30372510 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 214, 80 |
| Conread position: | 182-805 |
| Cow position: | chr19:1031779-1032389 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 194-752 |
| Cow position: | chr19:39546314-39546884 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 361 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 217-737 |
| Cow position: | chr19:7405727-7405230 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 220-715 |
| Cow position: | chr19:34137-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 323 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 220-792 |
| Cow position: | chr19:203677-204262 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 41 |
| Conread position: | 220-803 |
| Cow position: | chr19:40887931-40887345 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 220-823 |
| Cow position: | chr19:7341786-7342401 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 390 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 264-795 |
| Cow position: | chr19:37656-38199 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 271-805 |
| Cow position: | chr19:32212305-32211759 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 348 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 25, 219 |
| Conread position: | 272-706 |
| Cow position: | chr19:55078510-55078961 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 272-805 |
| Cow position: | chr19:171975-172525 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 272-805 |
| Cow position: | chr19:7488077-7488627 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 272-819 |
| Cow position: | chr19:40852666-40852110 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 272-912 |
| Cow position: | chr19:33941376-33942028 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 416 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 395 |
| Conread position: | 279-756 |
| Cow position: | chr19:35979039-35979528 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 115 |
| Conread position: | 282-805 |
| Cow position: | chr19:76455-75955 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 282-818 |
| Cow position: | chr19:32202535-32203066 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 122 |
| Conread position: | 289-783 |
| Cow position: | chr19:4385266-4385773 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 170 |
| Conread position: | 293-805 |
| Cow position: | chr19:28581865-28581345 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 297-653 |
| Cow position: | chr19:29209357-29209720 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 32, 60 |
| Conread position: | 303-744 |
| Cow position: | chr19:359703-359255 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 303-792 |
| Cow position: | chr19:893809-893314 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 303-879 |
| Cow position: | chr19:15953658-15954224 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 384 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 306-805 |
| Cow position: | chr19:416451-416975 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 346 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 154 |
| Conread position: | 308-805 |
| Cow position: | chr19:32665336-32665839 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 309-776 |
| Cow position: | chr19:261232-261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 310-805 |
| Cow position: | chr19:43143522-43144030 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 327 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 329-805 |
| Cow position: | chr19:10672482-10671992 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 159 |
| Conread position: | 335-805 |
| Cow position: | chr19:39390352-39390822 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 308 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 382-729 |
| Cow position: | chr19:543741-543389 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 385-788 |
| Cow position: | chr19:33873312-33873723 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 385-805 |
| Cow position: | chr19:772484-772913 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 385-805 |
| Cow position: | chr19:32244570-32244998 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 386-750 |
| Cow position: | chr19:30755062-30755438 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 286 |
| Conread position: | 392-818 |
| Cow position: | chr19:42248707-42249130 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 450-713 |
| Cow position: | chr19:32237728-32237460 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 506-805 |
| Cow position: | chr19:52151818-52151516 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 85, 238 |
| Conread position: | 521-673 |
| Cow position: | chr19:18728883-18729031 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 521-818 |
| Cow position: | chr19:10517079-10516776 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 529-805 |
| Cow position: | chr19:2274338-2274064 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 534-805 |
| Cow position: | chr19:20104753-20105027 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 57, 210 |
| Conread position: | 541-873 |
| Cow position: | chr19:35376836-35377166 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 554-804 |
| Cow position: | chr19:537069-537328 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 215 |
| Conread position: | 567-819 |
| Cow position: | chr19:17018544-17018780 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 599-873 |
| Cow position: | chr19:42649005-42648732 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 83, 185 |
| Conread position: | 831-1016 |
| Cow position: | chr19:7449550-7449369 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 71 |
Show alignments to all cow chromosomes.