Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-278 |
| Cow position: | chr20:19367818-19367534 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 109, 49 |
| Conread position: | 1-360 |
| Cow position: | chr20:18328807-18328463 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 126 |
| Conread position: | 76-819 |
| Cow position: | chr20:22206087-22206821 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 469 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 109-689 |
| Cow position: | chr20:2676682-2677270 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 386 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 181-819 |
| Cow position: | chr20:13782356-13782973 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 402 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 184-805 |
| Cow position: | chr20:5534598-5535208 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 75 |
| Conread position: | 214-805 |
| Cow position: | chr20:8313769-8313169 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 220-634 |
| Cow position: | chr20:4799973-4799552 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 278 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 220-795 |
| Cow position: | chr20:3270394-3270965 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 220-805 |
| Cow position: | chr20:5561044-5560444 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 229-795 |
| Cow position: | chr20:9954290-9953725 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 39 |
| Conread position: | 264-778 |
| Cow position: | chr20:19437670-19438191 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 344 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 32, 105 |
| Conread position: | 265-819 |
| Cow position: | chr20:13435197-13434670 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 365 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 268-819 |
| Cow position: | chr20:35119291-35119854 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 220 |
| Conread position: | 271-792 |
| Cow position: | chr20:23798603-23799144 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 272-792 |
| Cow position: | chr20:15098146-15097619 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 275-643 |
| Cow position: | chr20:22717959-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 135, 54 |
| Conread position: | 283-718 |
| Cow position: | chr20:30684074-30684519 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 297-805 |
| Cow position: | chr20:12439014-12438490 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 297-819 |
| Cow position: | chr20:24614297-24614820 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 303-803 |
| Cow position: | chr20:3252378-3251866 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 343 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 303-805 |
| Cow position: | chr20:21914076-21914598 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 341 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 311-808 |
| Cow position: | chr20:13665424-13664941 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 329-630 |
| Cow position: | chr20:35973631-35973314 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 329-681 |
| Cow position: | chr20:21393354-21393710 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 329-746 |
| Cow position: | chr20:11679329-11678897 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 278 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 64, 160 |
| Conread position: | 329-789 |
| Cow position: | chr20:27868978-27869452 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 329-805 |
| Cow position: | chr20:7116689-7116198 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 124 |
| Conread position: | 329-805 |
| Cow position: | chr20:23469879-23469395 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 401 |
| Conread position: | 329-805 |
| Cow position: | chr20:28160562-28161041 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 319 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 329-819 |
| Cow position: | chr20:25851209-25850706 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 369-675 |
| Cow position: | chr20:18328233-18327929 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 371-644 |
| Cow position: | chr20:7085749-7085471 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 33, 196 |
| Conread position: | 382-716 |
| Cow position: | chr20:24516872-24517213 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 183 |
| Conread position: | 382-795 |
| Cow position: | chr20:5484027-5484451 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 382-804 |
| Cow position: | chr20:8004386-8003956 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 382-819 |
| Cow position: | chr20:20905350-20904929 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 385-792 |
| Cow position: | chr20:15291860-15292268 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 405-805 |
| Cow position: | chr20:822628-823038 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 271 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 33, 346 |
| Conread position: | 406-756 |
| Cow position: | chr20:31379020-31378664 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 424-796 |
| Cow position: | chr20:28476198-28476561 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 42 |
| Conread position: | 444-805 |
| Cow position: | chr20:25961005-25961374 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 450-805 |
| Cow position: | chr20:13680147-13679787 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 72, 6 |
| Conread position: | 500-796 |
| Cow position: | chr20:10841283-10840985 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 509-805 |
| Cow position: | chr20:3684512-3684217 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 82, 143 |
| Conread position: | 521-805 |
| Cow position: | chr20:3033046-3033332 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 557-817 |
| Cow position: | chr20:8993623-8993362 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 592-791 |
| Cow position: | chr20:19367531-19367332 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 605-820 |
| Cow position: | chr20:35104562-35104344 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 826-1164 |
| Cow position: | chr20:18325152-18324801 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 836-1135 |
| Cow position: | chr20:41720609-41720902 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 218, 77 |
Show alignments to all cow chromosomes.