Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-809 |
| Cow position: | chr21:993432-992635 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 124 |
| Conread position: | 7-402 |
| Cow position: | chr21:26094420-26094790 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 33-277 |
| Cow position: | chr21:21927146-21926903 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 111-617 |
| Cow position: | chr21:21516894-21517391 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 332 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 219, 63 |
| Conread position: | 126-515 |
| Cow position: | chr21:4083351-4083738 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 165-805 |
| Cow position: | chr21:4590248-4589601 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 410 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 168-819 |
| Cow position: | chr21:6699801-6699179 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 181-769 |
| Cow position: | chr21:4222923-4222339 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 381 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 206, 51 |
| Conread position: | 181-789 |
| Cow position: | chr21:3426258-3426859 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 400 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 150, 22 |
| Conread position: | 184-795 |
| Cow position: | chr21:13124221-13123626 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 32 |
| Conread position: | 220-692 |
| Cow position: | chr21:34259422-34258953 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 220-805 |
| Cow position: | chr21:11453863-11453266 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 392 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 220-819 |
| Cow position: | chr21:4090440-4091053 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 383 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 272-805 |
| Cow position: | chr21:145760-146312 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 272-805 |
| Cow position: | chr21:3778608-3779156 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 116 |
| Conread position: | 273-788 |
| Cow position: | chr21:11505432-11505968 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 346 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 273-805 |
| Cow position: | chr21:12056152-12055611 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 280-657 |
| Cow position: | chr21:3615143-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 282-644 |
| Cow position: | chr21:26819160-26818793 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 282-751 |
| Cow position: | chr21:2476657-2476191 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 111, 207 |
| Conread position: | 287-792 |
| Cow position: | chr21:47947966-47948485 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 336 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 294-819 |
| Cow position: | chr21:2510518-2511055 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 297-792 |
| Cow position: | chr21:47939345-47939848 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 239 |
| Conread position: | 297-815 |
| Cow position: | chr21:9891477-9892002 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 346 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 300-795 |
| Cow position: | chr21:1292303-1291811 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 327 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 300-795 |
| Cow position: | chr21:46915457-46915968 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 300-805 |
| Cow position: | chr21:4456701-4457216 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 335 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 300-805 |
| Cow position: | chr21:26638594-26638075 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 300-805 |
| Cow position: | chr21:37044784-37045300 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 300-819 |
| Cow position: | chr21:4076717-4077241 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 309-673 |
| Cow position: | chr21:2716800-2716425 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 309-782 |
| Cow position: | chr21:21947918-21947441 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 309-805 |
| Cow position: | chr21:2416120-2416608 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 323 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 309-805 |
| Cow position: | chr21:35596249-35596756 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 311-777 |
| Cow position: | chr21:2530246-2529766 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 254 |
| Conread position: | 329-710 |
| Cow position: | chr21:2769562-2769166 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 329-789 |
| Cow position: | chr21:2541515-2541039 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 130 |
| Conread position: | 329-804 |
| Cow position: | chr21:10566578-10567057 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 317 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 75, 67 |
| Conread position: | 329-805 |
| Cow position: | chr21:31559755-31559266 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 317 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 64, 375 |
| Conread position: | 329-819 |
| Cow position: | chr21:30600015-30599522 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 325 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 329-819 |
| Cow position: | chr21:48116008-48116505 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 64, 219 |
| Conread position: | 329-869 |
| Cow position: | chr21:30561702-30562253 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 330-783 |
| Cow position: | chr21:7267635-7267168 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 102, 69 |
| Conread position: | 333-781 |
| Cow position: | chr21:20744845-20744399 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 335-805 |
| Cow position: | chr21:358922-359423 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 63, 145 |
| Conread position: | 338-805 |
| Cow position: | chr21:2883825-2883358 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 136, 47 |
| Conread position: | 350-805 |
| Cow position: | chr21:2789070-2788603 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 385-805 |
| Cow position: | chr21:34292980-34293405 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 390-819 |
| Cow position: | chr21:23601162-23601594 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 407-819 |
| Cow position: | chr21:21914268-21914688 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 6 |
| Conread position: | 417-805 |
| Cow position: | chr21:6339558-6339956 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 417-873 |
| Cow position: | chr21:8678368-8677902 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 418-819 |
| Cow position: | chr21:3194389-3194783 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 431-734 |
| Cow position: | chr21:37147524-37147828 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 445-723 |
| Cow position: | chr21:18692745-18693019 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 473-819 |
| Cow position: | chr21:10762456-10762789 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 476-807 |
| Cow position: | chr21:21926649-21926319 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 480-781 |
| Cow position: | chr21:34054684-34054368 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 508-785 |
| Cow position: | chr21:40271586-40271307 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 521-805 |
| Cow position: | chr21:3798267-3797981 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 536-819 |
| Cow position: | chr21:4086921-4087206 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 549-820 |
| Cow position: | chr21:1191295-1191568 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 42, 260 |
| Conread position: | 591-805 |
| Cow position: | chr21:26650216-26650431 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 87, 155 |
| Conread position: | 620-815 |
| Cow position: | chr21:25799299-25799487 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 62, 38 |
| Conread position: | 862-1160 |
| Cow position: | chr21:37292748-37293060 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 147 |
Show alignments to all cow chromosomes.