Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-229 |
| Cow position: | chr23:1322411-1322191 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 84, 89 |
| Conread position: | 181-792 |
| Cow position: | chr23:15176651-15177277 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 308 |
| Conread position: | 182-812 |
| Cow position: | chr23:34174759-34175401 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 87 |
| Conread position: | 184-792 |
| Cow position: | chr23:2027523-2026915 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 75 |
| Conread position: | 218-805 |
| Cow position: | chr23:989025-988431 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 375 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 220-805 |
| Cow position: | chr23:20301829-20302430 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 387 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 220-805 |
| Cow position: | chr23:31446432-31447032 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 220-819 |
| Cow position: | chr23:19950967-19950352 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 388 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 243-819 |
| Cow position: | chr23:26835945-26836504 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 60 |
| Conread position: | 269-792 |
| Cow position: | chr23:3882030-3881501 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 348 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 272-789 |
| Cow position: | chr23:2795894-2795363 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 188 |
| Conread position: | 272-803 |
| Cow position: | chr23:15220225-15219676 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 272-805 |
| Cow position: | chr23:4640957-4640407 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 24, 187 |
| Conread position: | 272-805 |
| Cow position: | chr23:15525281-15525827 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 272-815 |
| Cow position: | chr23:22147591-22147023 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 358 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 272-819 |
| Cow position: | chr23:967680-967119 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 358 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 24, 431 |
| Conread position: | 272-819 |
| Cow position: | chr23:30636634-30636070 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 218 |
| Conread position: | 282-805 |
| Cow position: | chr23:2313557-2313023 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 346 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 283-819 |
| Cow position: | chr23:28913094-28913627 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 355 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 292-795 |
| Cow position: | chr23:16617162-16616639 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 217 |
| Conread position: | 297-754 |
| Cow position: | chr23:5875078-5874613 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 297-805 |
| Cow position: | chr23:4276652-4277172 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 297-805 |
| Cow position: | chr23:7273354-7273848 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 334 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 297-819 |
| Cow position: | chr23:4434158-4434687 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 346 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 26, 199 |
| Conread position: | 299-806 |
| Cow position: | chr23:13508765-13509270 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 306-805 |
| Cow position: | chr23:27399210-27399720 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 309-804 |
| Cow position: | chr23:4359536-4360046 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 21, 181 |
| Conread position: | 309-805 |
| Cow position: | chr23:5779379-5778870 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 173 |
| Conread position: | 329-752 |
| Cow position: | chr23:4815802-4816239 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 329-778 |
| Cow position: | chr23:2574293-2574725 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 294 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 162 |
| Conread position: | 329-805 |
| Cow position: | chr23:4888408-4888890 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 218 |
| Conread position: | 335-819 |
| Cow position: | chr23:36031635-36031142 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 156 |
| Conread position: | 338-825 |
| Cow position: | chr23:19332660-19332174 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 320 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 69, 213 |
| Conread position: | 382-792 |
| Cow position: | chr23:3013430-3013850 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 382-805 |
| Cow position: | chr23:14965961-14965535 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 392-805 |
| Cow position: | chr23:2524402-2523980 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 100 |
| Conread position: | 405-819 |
| Cow position: | chr23:14974755-14974332 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 406-883 |
| Cow position: | chr23:38578100-38578571 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 416-817 |
| Cow position: | chr23:6216393-6216801 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 451-795 |
| Cow position: | chr23:31591954-31591595 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 451-930 |
| Cow position: | chr23:29474698-29474205 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 129 |
| Conread position: | 457-819 |
| Cow position: | chr23:7047199-7046824 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 289 |
| Conread position: | 508-792 |
| Cow position: | chr23:2757512-2757798 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 509-792 |
| Cow position: | chr23:2716309-2716592 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 90, 143 |
| Conread position: | 514-819 |
| Cow position: | chr23:36211204-36210890 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 73, 301 |
| Conread position: | 521-815 |
| Cow position: | chr23:2763830-2763543 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 73, 102 |
| Conread position: | 527-785 |
| Cow position: | chr23:10903466-10903732 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 531-805 |
| Cow position: | chr23:20156276-20155998 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 534-805 |
| Cow position: | chr23:25684111-25683846 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 5, 30 |
| Conread position: | 541-819 |
| Cow position: | chr23:31595286-31595005 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 558-806 |
| Cow position: | chr23:22945096-22944855 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 125, 88 |
| Conread position: | 563-814 |
| Cow position: | chr23:19450231-19450477 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 119, 33 |
| Conread position: | 610-883 |
| Cow position: | chr23:16615974-16615702 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 5 |
| Conread position: | 662-819 |
| Cow position: | chr23:3863020-3863177 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 813-1164 |
| Cow position: | chr23:26836607-26836965 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 202 |
| Conread position: | 836-1039 |
| Cow position: | chr23:13509408-13509612 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 105, 74 |
Show alignments to all cow chromosomes.