Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-819 |
| Cow position: | chr24:14873834-14873033 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 613 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 125 |
| Conread position: | 1-873 |
| Cow position: | chr24:6047760-6048611 (view UCSC Genome Browser custom track) |
| Alignm length: | 896 |
| Alignm identity: | 620 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 124 |
| Conread position: | 21-283 |
| Cow position: | chr24:6512034-6511774 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 88-803 |
| Cow position: | chr24:6144936-6145669 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 447 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 179-805 |
| Cow position: | chr24:35838943-35838317 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 24 |
| Conread position: | 181-717 |
| Cow position: | chr24:38635433-38635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 343 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 194, 92 |
| Conread position: | 181-805 |
| Cow position: | chr24:4415846-4415226 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 78 |
| Conread position: | 181-819 |
| Cow position: | chr24:6351878-6352501 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 415 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 212, 83 |
| Conread position: | 183-819 |
| Cow position: | chr24:16084990-16084342 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 405 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 104, 34 |
| Conread position: | 192-754 |
| Cow position: | chr24:12161575-12162125 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 357 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 214, 91 |
| Conread position: | 220-680 |
| Cow position: | chr24:36296878-36297345 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 220-795 |
| Cow position: | chr24:12114327-12113754 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 362 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 72 |
| Conread position: | 220-805 |
| Cow position: | chr24:6025393-6024795 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 385 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 220-805 |
| Cow position: | chr24:12485614-12485014 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 378 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 220-805 |
| Cow position: | chr24:44017249-44017849 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 220-819 |
| Cow position: | chr24:9189027-9188415 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 272-789 |
| Cow position: | chr24:12085953-12086485 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 323 |
| Conread position: | 273-749 |
| Cow position: | chr24:12131727-12131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 179 |
| Conread position: | 273-805 |
| Cow position: | chr24:6433999-6434543 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 282-722 |
| Cow position: | chr24:14390955-14390511 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 289-778 |
| Cow position: | chr24:12797986-12797492 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 291-819 |
| Cow position: | chr24:16649524-16649000 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 333 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 294-795 |
| Cow position: | chr24:36560302-36559794 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 294-805 |
| Cow position: | chr24:6083793-6084320 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 197 |
| Conread position: | 294-805 |
| Cow position: | chr24:22792953-22793475 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 101 |
| Conread position: | 294-818 |
| Cow position: | chr24:36707626-36708161 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 339 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 294-883 |
| Cow position: | chr24:35841838-35841240 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 383 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 297-673 |
| Cow position: | chr24:17187325-17187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 162 |
| Conread position: | 300-819 |
| Cow position: | chr24:1447353-1447871 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 310-667 |
| Cow position: | chr24:7060894-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 180 |
| Conread position: | 310-799 |
| Cow position: | chr24:12568047-12568524 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 106, 166 |
| Conread position: | 324-589 |
| Cow position: | chr24:6511322-6511043 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 81 |
| Conread position: | 329-899 |
| Cow position: | chr24:19833197-19833776 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 67 |
| Conread position: | 380-795 |
| Cow position: | chr24:6335563-6335975 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 382-823 |
| Cow position: | chr24:14584963-14585398 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 385-792 |
| Cow position: | chr24:22952010-22952426 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 390-795 |
| Cow position: | chr24:9092394-9091992 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 390-805 |
| Cow position: | chr24:40548758-40549177 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 55, 6 |
| Conread position: | 395-772 |
| Cow position: | chr24:37321715-37321337 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 5 |
| Conread position: | 427-818 |
| Cow position: | chr24:6537466-6537853 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 54 |
| Conread position: | 434-819 |
| Cow position: | chr24:40654315-40654701 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 450-819 |
| Cow position: | chr24:32331266-32331632 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 473-805 |
| Cow position: | chr24:6660645-6660296 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 147 |
| Conread position: | 490-792 |
| Cow position: | chr24:17696987-17696688 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 514-805 |
| Cow position: | chr24:37217014-37217302 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 528-792 |
| Cow position: | chr24:12335750-12335484 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 555-805 |
| Cow position: | chr24:29187334-29187586 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 567-805 |
| Cow position: | chr24:33739273-33739037 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 583-853 |
| Cow position: | chr24:13524184-13524457 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 8, 76 |
| Conread position: | 638-876 |
| Cow position: | chr24:8152871-8152631 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 122 |
| Conread position: | 812-1162 |
| Cow position: | chr24:6048634-6048974 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 826-1131 |
| Cow position: | chr24:14872933-14872626 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 59 |
Show alignments to all cow chromosomes.