Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-283 |
| Cow position: | chr28:29437672-29437392 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 1-301 |
| Cow position: | chr28:8783564-8783862 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 1-669 |
| Cow position: | chr28:10591894-10591262 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 126 |
| Conread position: | 181-586 |
| Cow position: | chr28:17330888-17330486 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 206, 77 |
| Conread position: | 181-805 |
| Cow position: | chr28:15378370-15377731 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 151 |
| Conread position: | 185-805 |
| Cow position: | chr28:4381186-4380583 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 216-805 |
| Cow position: | chr28:2591573-2592176 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 220-792 |
| Cow position: | chr28:8721782-8721200 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 220-795 |
| Cow position: | chr28:1952804-1953381 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 368 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 151, 41 |
| Conread position: | 220-819 |
| Cow position: | chr28:14750210-14750822 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 271-792 |
| Cow position: | chr28:1387679-1387152 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 340 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 272-792 |
| Cow position: | chr28:2083316-2083844 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 341 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 24, 225 |
| Conread position: | 272-805 |
| Cow position: | chr28:10582273-10581725 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 182 |
| Conread position: | 272-805 |
| Cow position: | chr28:17667800-17667252 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 116 |
| Conread position: | 272-805 |
| Cow position: | chr28:22261439-22260889 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 273-805 |
| Cow position: | chr28:5565574-5566115 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 351 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 23, 186 |
| Conread position: | 275-806 |
| Cow position: | chr28:18102210-18101683 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 178 |
| Conread position: | 277-785 |
| Cow position: | chr28:34648656-34649185 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 338 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 282-706 |
| Cow position: | chr28:15950706-15951142 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 282-805 |
| Cow position: | chr28:13441152-13440615 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 345 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 290-881 |
| Cow position: | chr28:17388213-17388814 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 384 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 293-819 |
| Cow position: | chr28:15585131-15585667 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 297-792 |
| Cow position: | chr28:7001726-7002238 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 297-795 |
| Cow position: | chr28:782136-782646 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 132 |
| Conread position: | 297-795 |
| Cow position: | chr28:9155546-9155031 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 342 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 297-869 |
| Cow position: | chr28:1815129-1814545 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 372 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 300-795 |
| Cow position: | chr28:15920725-15920213 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 300-795 |
| Cow position: | chr28:24587174-24587686 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 333 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 29, 191 |
| Conread position: | 303-792 |
| Cow position: | chr28:7821999-7822506 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 309-784 |
| Cow position: | chr28:7901106-7901596 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 323 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 309-805 |
| Cow position: | chr28:3193039-3192530 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 263 |
| Conread position: | 309-805 |
| Cow position: | chr28:21358772-21359263 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 326 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 318-805 |
| Cow position: | chr28:9953897-9954394 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 329-704 |
| Cow position: | chr28:26426500-26426117 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 329-789 |
| Cow position: | chr28:12150094-12150549 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 187, 67 |
| Conread position: | 329-792 |
| Cow position: | chr28:18520689-18520211 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 329-819 |
| Cow position: | chr28:8378339-8378844 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 329-895 |
| Cow position: | chr28:1504627-1505199 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 330-823 |
| Cow position: | chr28:10619328-10618834 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 385-805 |
| Cow position: | chr28:33252150-33252573 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 385-819 |
| Cow position: | chr28:6780496-6780058 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 385-867 |
| Cow position: | chr28:12410377-12409905 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 136, 14 |
| Conread position: | 385-881 |
| Cow position: | chr28:5114967-5114476 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 386-641 |
| Cow position: | chr28:34324660-34324909 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 404-805 |
| Cow position: | chr28:24667432-24667841 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 34, 9 |
| Conread position: | 414-796 |
| Cow position: | chr28:7740354-7740739 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 415-783 |
| Cow position: | chr28:11027092-11026726 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 450-819 |
| Cow position: | chr28:9137149-9136776 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 474-795 |
| Cow position: | chr28:2724967-2724639 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 37, 8 |
| Conread position: | 480-643 |
| Cow position: | chr28:27986073-27986235 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 484-819 |
| Cow position: | chr28:12233064-12232726 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 521-781 |
| Cow position: | chr28:17935061-17934801 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 68, 173 |
| Conread position: | 524-881 |
| Cow position: | chr28:22065758-22065405 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 130, 66 |
| Conread position: | 528-792 |
| Cow position: | chr28:5751724-5751457 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 528-805 |
| Cow position: | chr28:34593961-34594240 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 532-883 |
| Cow position: | chr28:2846185-2845839 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 59, 44 |
| Conread position: | 533-834 |
| Cow position: | chr28:29437287-29436999 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 555-819 |
| Cow position: | chr28:5800636-5800894 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 32 |
| Conread position: | 572-872 |
| Cow position: | chr28:21325820-21326125 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 574-819 |
| Cow position: | chr28:17311974-17312212 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 574-869 |
| Cow position: | chr28:29819762-29820056 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 249 |
| Conread position: | 582-788 |
| Cow position: | chr28:2989679-2989472 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 582-805 |
| Cow position: | chr28:1931947-1931723 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 95, 160 |
| Conread position: | 593-819 |
| Cow position: | chr28:5797481-5797706 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 63 |
| Conread position: | 599-819 |
| Cow position: | chr28:18181095-18180881 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 80, 157 |
| Conread position: | 771-1135 |
| Cow position: | chr28:5800941-5801315 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 813-1145 |
| Cow position: | chr28:10230231-10229884 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 824-1164 |
| Cow position: | chr28:29436862-29436500 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 45 |
Show alignments to all cow chromosomes.