Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-819 |
| Cow position: | chr29:16017696-16016912 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 123 |
| Conread position: | 160-905 |
| Cow position: | chr29:8063318-8062571 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 168-819 |
| Cow position: | chr29:15950612-15949950 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 424 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 17, 89 |
| Conread position: | 220-727 |
| Cow position: | chr29:15969513-15969002 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 110, 35 |
| Conread position: | 220-739 |
| Cow position: | chr29:4635333-4634815 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 342 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 106, 28 |
| Conread position: | 220-792 |
| Cow position: | chr29:7840426-7841010 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 372 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 220-805 |
| Cow position: | chr29:15895220-15894623 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 381 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 271-792 |
| Cow position: | chr29:10648568-10648037 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 343 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 272-736 |
| Cow position: | chr29:16109406-16109885 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 272-792 |
| Cow position: | chr29:25932866-25932330 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 187 |
| Conread position: | 272-792 |
| Cow position: | chr29:32315720-32316255 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 348 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 272-805 |
| Cow position: | chr29:2841687-2841146 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 110 |
| Conread position: | 272-805 |
| Cow position: | chr29:19623566-19623020 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 85 |
| Conread position: | 272-805 |
| Cow position: | chr29:19652786-19653335 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 272-805 |
| Cow position: | chr29:26165144-26164595 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 272-846 |
| Cow position: | chr29:34800128-34799541 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 272-881 |
| Cow position: | chr29:7431538-7430922 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 273-805 |
| Cow position: | chr29:610929-610385 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 282-690 |
| Cow position: | chr29:28060975-28060552 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 294-883 |
| Cow position: | chr29:1714954-1715546 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 370 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 297-795 |
| Cow position: | chr29:27041056-27040552 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 297-805 |
| Cow position: | chr29:39080002-39079485 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 275 |
| Conread position: | 300-792 |
| Cow position: | chr29:2099551-2100059 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 188 |
| Conread position: | 300-805 |
| Cow position: | chr29:27250629-27250115 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 7, 192 |
| Conread position: | 300-846 |
| Cow position: | chr29:45459426-45459982 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 301-795 |
| Cow position: | chr29:670332-669840 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 169, 46 |
| Conread position: | 306-773 |
| Cow position: | chr29:30811245-30811723 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 314 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 15, 356 |
| Conread position: | 306-805 |
| Cow position: | chr29:16022244-16022757 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 307-819 |
| Cow position: | chr29:35196389-35196905 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 337 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 309-805 |
| Cow position: | chr29:32539528-32540037 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 310-667 |
| Cow position: | chr29:31180842-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 310-818 |
| Cow position: | chr29:43366277-43365750 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 336 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 314-778 |
| Cow position: | chr29:17662645-17663104 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 329-725 |
| Cow position: | chr29:13853282-13852878 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 329-792 |
| Cow position: | chr29:40503241-40502768 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 309 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 329-805 |
| Cow position: | chr29:10824221-10823742 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 325 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 329-805 |
| Cow position: | chr29:43322297-43322782 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 320 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 64, 401 |
| Conread position: | 329-869 |
| Cow position: | chr29:2689643-2690188 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 333-795 |
| Cow position: | chr29:11049026-11049495 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 335-684 |
| Cow position: | chr29:21246312-21246676 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 335-805 |
| Cow position: | chr29:6266750-6266274 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 151 |
| Conread position: | 346-776 |
| Cow position: | chr29:48721-48280 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 365-819 |
| Cow position: | chr29:11855373-11855843 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 374-804 |
| Cow position: | chr29:10848328-10847866 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 311 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 380-792 |
| Cow position: | chr29:104364-104781 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 13, 147 |
| Conread position: | 382-805 |
| Cow position: | chr29:38226795-38227207 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 138 |
| Conread position: | 382-819 |
| Cow position: | chr29:16769928-16770364 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 385-738 |
| Cow position: | chr29:24198824-24198459 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 385-795 |
| Cow position: | chr29:27981121-27980700 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 385-805 |
| Cow position: | chr29:21543567-21543142 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 405-805 |
| Cow position: | chr29:19884887-19885297 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 450-819 |
| Cow position: | chr29:11841531-11841899 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 71, 5 |
| Conread position: | 508-785 |
| Cow position: | chr29:42650213-42650491 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 508-785 |
| Cow position: | chr29:42802073-42802351 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 508-792 |
| Cow position: | chr29:14585856-14586136 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 83, 132 |
| Conread position: | 508-805 |
| Cow position: | chr29:18857016-18856717 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 83, 234 |
| Conread position: | 524-817 |
| Cow position: | chr29:4056094-4056389 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 528-805 |
| Cow position: | chr29:9643810-9643529 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 63, 132 |
| Conread position: | 528-805 |
| Cow position: | chr29:13582020-13582295 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 173 |
| Conread position: | 560-805 |
| Cow position: | chr29:410545-410298 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 567-773 |
| Cow position: | chr29:12796378-12796170 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 137 |
| Conread position: | 593-805 |
| Cow position: | chr29:45587345-45587133 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 71 |
| Conread position: | 817-1160 |
| Cow position: | chr29:8062523-8062169 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 931-1164 |
| Cow position: | chr29:16016673-16016448 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 77 |
Show alignments to all cow chromosomes.