Cow genome map
| Conread name: | Ss1.1-Liv1-LVRM1B120045.5 |
| Conread position: | 1-819 |
| Cow position: | chr4:1497587-1496795 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 125 |
| Conread position: | 1-848 |
| Cow position: | chr4:4175605-4176422 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 49 |
| Conread position: | 2-819 |
| Cow position: | chr4:40825096-40824289 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 181-789 |
| Cow position: | chr4:21338647-21338069 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 389 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 218, 16 |
| Conread position: | 216-843 |
| Cow position: | chr4:6215214-6214569 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 220-769 |
| Cow position: | chr4:528343-528907 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 359 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 220-803 |
| Cow position: | chr4:3829846-3830423 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 32 |
| Conread position: | 220-805 |
| Cow position: | chr4:101579-100983 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 373 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 220-805 |
| Cow position: | chr4:65224184-65223584 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 220-819 |
| Cow position: | chr4:12241870-12241254 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 220-819 |
| Cow position: | chr4:47764820-47764207 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 220-820 |
| Cow position: | chr4:602347-602958 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 388 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 221-805 |
| Cow position: | chr4:13547379-13547979 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 221-819 |
| Cow position: | chr4:17926903-17926291 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 267-886 |
| Cow position: | chr4:46536847-46537464 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 370 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 271-805 |
| Cow position: | chr4:6490947-6490415 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 340 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 272-783 |
| Cow position: | chr4:36895774-36896295 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 341 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 272-792 |
| Cow position: | chr4:44724483-44725020 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 272-805 |
| Cow position: | chr4:45049895-45049349 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 355 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 272-805 |
| Cow position: | chr4:48025802-48026346 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 272-881 |
| Cow position: | chr4:13491976-13492598 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 273-805 |
| Cow position: | chr4:18425113-18424575 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 273-805 |
| Cow position: | chr4:32211571-32212117 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 351 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 277-783 |
| Cow position: | chr4:66925411-66925924 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 98 |
| Conread position: | 277-818 |
| Cow position: | chr4:17531007-17530467 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 283-713 |
| Cow position: | chr4:33493225-33493666 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 291-805 |
| Cow position: | chr4:30308032-30307509 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 347 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 294-704 |
| Cow position: | chr4:34185434-34185022 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 294-795 |
| Cow position: | chr4:1931197-1930684 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 164 |
| Conread position: | 294-805 |
| Cow position: | chr4:25600187-25599669 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 62 |
| Conread position: | 295-803 |
| Cow position: | chr4:496513-496010 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 297-756 |
| Cow position: | chr4:29532288-29531814 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 309 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 31, 449 |
| Conread position: | 297-792 |
| Cow position: | chr4:3961021-3961528 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 99 |
| Conread position: | 297-795 |
| Cow position: | chr4:28830465-28830969 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 297-805 |
| Cow position: | chr4:41330866-41331388 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 345 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 299-734 |
| Cow position: | chr4:60673323-60673743 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 98 |
| Conread position: | 303-804 |
| Cow position: | chr4:39272509-39271988 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 309-777 |
| Cow position: | chr4:24445759-24445279 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 309-795 |
| Cow position: | chr4:6269188-6268687 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 324 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 84, 180 |
| Conread position: | 309-805 |
| Cow position: | chr4:66179546-66179038 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 310-879 |
| Cow position: | chr4:1464476-1463901 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 367 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 329-792 |
| Cow position: | chr4:355374-355846 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 67 |
| Conread position: | 329-792 |
| Cow position: | chr4:4905614-4906083 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 216 |
| Conread position: | 329-792 |
| Cow position: | chr4:18516356-18516833 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 329-795 |
| Cow position: | chr4:157976-158455 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 64, 88 |
| Conread position: | 329-805 |
| Cow position: | chr4:43880569-43881058 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 379 |
| Conread position: | 333-739 |
| Cow position: | chr4:24198728-24198330 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 333-819 |
| Cow position: | chr4:969576-969079 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 121 |
| Conread position: | 338-792 |
| Cow position: | chr4:43320167-43319710 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 334 |
| Conread position: | 347-817 |
| Cow position: | chr4:54157506-54157955 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 163 |
| Conread position: | 349-883 |
| Cow position: | chr4:8598658-8598130 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 344 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 385-805 |
| Cow position: | chr4:57979152-57979577 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 66, 14 |
| Conread position: | 390-769 |
| Cow position: | chr4:26887315-26886949 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 391-802 |
| Cow position: | chr4:15263463-15263041 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 391-805 |
| Cow position: | chr4:11618386-11618803 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 391-818 |
| Cow position: | chr4:9101869-9102300 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 392-778 |
| Cow position: | chr4:47718077-47717684 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 393-813 |
| Cow position: | chr4:62565516-62565936 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 89 |
| Conread position: | 404-819 |
| Cow position: | chr4:22471728-22472132 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 405-820 |
| Cow position: | chr4:27332983-27333400 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 413-819 |
| Cow position: | chr4:46663750-46664155 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 101, 35 |
| Conread position: | 415-881 |
| Cow position: | chr4:33073547-33073089 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 427-879 |
| Cow position: | chr4:30283225-30283670 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 451-821 |
| Cow position: | chr4:60264975-60264602 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 507-818 |
| Cow position: | chr4:33593802-33594110 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 515-819 |
| Cow position: | chr4:12586958-12587262 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 521-795 |
| Cow position: | chr4:41119677-41119953 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 529-805 |
| Cow position: | chr4:61256568-61256841 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 60, 189 |
| Conread position: | 567-805 |
| Cow position: | chr4:9355061-9354821 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 175 |
| Conread position: | 611-805 |
| Cow position: | chr4:9587018-9587213 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 135 |
| Conread position: | 665-820 |
| Cow position: | chr4:17382622-17382472 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 814-1160 |
| Cow position: | chr4:4176497-4176839 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 204 |
| Conread position: | 826-1164 |
| Cow position: | chr4:1496677-1496339 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 833-1070 |
| Cow position: | chr4:32622083-32622313 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 852-1159 |
| Cow position: | chr4:968905-968607 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 215, 62 |
| Conread position: | 854-1164 |
| Cow position: | chr4:44925812-44925485 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 71, 153 |
| Conread position: | 855-1164 |
| Cow position: | chr4:495836-495532 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 285, 64 |
| Conread position: | 961-1164 |
| Cow position: | chr4:27295900-27295686 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 45 |
Show alignments to all cow chromosomes.