Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Liv1-LVRM1E090171.5
        

               Conread position:
               74-682
               

               Cow position:
               chr6:17090897-17090266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               639
               

               Alignm identity:
               407
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               30, 119
               

               Conread position:
               83-682
               

               Cow position:
               chr6:18988490-18987892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 50
               

               Conread position:
               94-610
               

               Cow position:
               chr6:3952799-3952270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               360
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               132, 15
               

               Conread position:
               99-682
               

               Cow position:
               chr6:16765116-16765719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 85
               

               Conread position:
               100-635
               

               Cow position:
               chr6:22332115-22332678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               370
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               101-670
               

               Cow position:
               chr6:64432214-64431627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 84
               

               Conread position:
               102-684
               

               Cow position:
               chr6:8562992-8562387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 10
               

               Conread position:
               103-655
               

               Cow position:
               chr6:47520325-47519751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 14
               

               Conread position:
               105-669
               

               Cow position:
               chr6:16700525-16699948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 12
               

               Conread position:
               109-676
               

               Cow position:
               chr6:32122168-32121591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 76
               

               Conread position:
               110-682
               

               Cow position:
               chr6:17414184-17414780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 19
               

               Conread position:
               113-667
               

               Cow position:
               chr6:9008362-9008919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 16
               

               Conread position:
               116-619
               

               Cow position:
               chr6:61514929-61515461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               362
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               10, 88
               

               Conread position:
               117-670
               

               Cow position:
               chr6:53932582-53933164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               387
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               121-547
               

               Cow position:
               chr6:50577774-50577335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               296
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               25, 51
               

               Conread position:
               121-555
               

               Cow position:
               chr6:1704052-1703622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               145, 44
               

               Conread position:
               121-564
               

               Cow position:
               chr6:7539831-7539371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               115, 61
               

               Conread position:
               123-470
               

               Cow position:
               chr6:59602956-59603317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               245
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               32, 67
               

               Conread position:
               124-511
               

               Cow position:
               chr6:9219517-9219124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               98, 10
               

               Conread position:
               124-525
               

               Cow position:
               chr6:15243513-15243088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               292
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               84, 25
               

               Conread position:
               124-586
               

               Cow position:
               chr6:53138683-53139152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               309
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               185, 58
               

               Conread position:
               124-628
               

               Cow position:
               chr6:54365076-54365596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 9
               

               Conread position:
               124-666
               

               Cow position:
               chr6:46558307-46557747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 10
               

               Conread position:
               124-669
               

               Cow position:
               chr6:4469021-4468446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               374
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               118, 64
               

               Conread position:
               124-676
               

               Cow position:
               chr6:18447256-18447830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 62
               

               Conread position:
               124-682
               

               Cow position:
               chr6:33302654-33302084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               124-684
               

               Cow position:
               chr6:61269572-61269006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 233
               

               Conread position:
               125-546
               

               Cow position:
               chr6:63251665-63252107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               17, 59
               

               Conread position:
               125-562
               

               Cow position:
               chr6:15300586-15301017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               295
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               21, 7
               

               Conread position:
               127-586
               

               Cow position:
               chr6:67951208-67950731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               86, 13
               

               Conread position:
               128-522
               

               Cow position:
               chr6:120489-120079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               282
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               18, 44
               

               Conread position:
               128-662
               

               Cow position:
               chr6:15937598-15938171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               391
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               18, 57
               

               Conread position:
               128-680
               

               Cow position:
               chr6:46466069-46465503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 54
               

               Conread position:
               130-575
               

               Cow position:
               chr6:6460754-6460325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 11
               

               Conread position:
               130-661
               

               Cow position:
               chr6:13367532-13366995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               357
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               16, 53
               

               Conread position:
               131-680
               

               Cow position:
               chr6:10105735-10106325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 40
               

               Conread position:
               132-586
               

               Cow position:
               chr6:24468151-24468620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 51
               

               Conread position:
               132-669
               

               Cow position:
               chr6:32287879-32287306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 51
               

               Conread position:
               132-682
               

               Cow position:
               chr6:47305589-47305001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 50
               

               Conread position:
               133-661
               

               Cow position:
               chr6:38771516-38770993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               365
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               134, 19
               

               Conread position:
               134-383
               

               Cow position:
               chr6:13653591-13653331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               30, 49
               

               Conread position:
               134-575
               

               Cow position:
               chr6:8966333-8965873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 48
               

               Conread position:
               134-581
               

               Cow position:
               chr6:55282042-55282513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               321
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               24, 51
               

               Conread position:
               134-667
               

               Cow position:
               chr6:44078760-44078205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 48
               

               Conread position:
               134-680
               

               Cow position:
               chr6:13687567-13688135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 52
               

               Conread position:
               134-682
               

               Cow position:
               chr6:10613075-10612536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               348
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               155, 54
               

               Conread position:
               134-682
               

               Cow position:
               chr6:11192235-11192778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 48
               

               Conread position:
               134-682
               

               Cow position:
               chr6:29485328-29484785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 48
               

               Conread position:
               135-562
               

               Cow position:
               chr6:53024567-53024998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               302
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               154, 47
               

               Conread position:
               135-578
               

               Cow position:
               chr6:899076-899504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               307
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               11, 48
               

               Conread position:
               135-582
               

               Cow position:
               chr6:7189882-7190343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               135-583
               

               Cow position:
               chr6:53460326-53460796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 369
               

               Conread position:
               135-583
               

               Cow position:
               chr6:54490502-54490965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               153, 47
               

               Conread position:
               135-616
               

               Cow position:
               chr6:49421552-49422043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               330
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               89, 37
               

               Conread position:
               135-662
               

               Cow position:
               chr6:611788-611261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 48
               

               Conread position:
               135-682
               

               Cow position:
               chr6:43345193-43345781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               386
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               19, 50
               

               Conread position:
               136-682
               

               Cow position:
               chr6:56850260-56849675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               384
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               91, 46
               

               Conread position:
               137-676
               

               Cow position:
               chr6:29210720-29210181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 46
               

               Conread position:
               137-682
               

               Cow position:
               chr6:23696237-23695671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 36
               

               Conread position:
               137-682
               

               Cow position:
               chr6:32126294-32125740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 50
               

               Conread position:
               141-679
               

               Cow position:
               chr6:47575129-47574605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 41
               

               Conread position:
               149-684
               

               Cow position:
               chr6:46292125-46292661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 33
               

               Conread position:
               150-520
               

               Cow position:
               chr6:19264272-19264658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 24
               

               Conread position:
               150-580
               

               Cow position:
               chr6:38207257-38207717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 26
               

               Conread position:
               150-587
               

               Cow position:
               chr6:4383703-4383262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 32
               

               Conread position:
               150-595
               

               Cow position:
               chr6:41375999-41375516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               321
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               110, 28
               

               Conread position:
               151-518
               

               Cow position:
               chr6:60740238-60739859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               60, 36
               

               Conread position:
               151-558
               

               Cow position:
               chr6:7128176-7128598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               279
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               67, 31
               

               Conread position:
               151-563
               

               Cow position:
               chr6:21231740-21231335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               289
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               138, 31
               

               Conread position:
               151-564
               

               Cow position:
               chr6:10399680-10400097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               291
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               70, 31
               

               Conread position:
               151-566
               

               Cow position:
               chr6:23532874-23532459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               130, 26
               

               Conread position:
               151-585
               

               Cow position:
               chr6:19402073-19401635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               298
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               71, 31
               

               Conread position:
               151-586
               

               Cow position:
               chr6:60143971-60144405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               295
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               75, 31
               

               Conread position:
               151-595
               

               Cow position:
               chr6:38853428-38853895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 31
               

               Conread position:
               151-680
               

               Cow position:
               chr6:53178854-53178314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 24
               

               Conread position:
               151-682
               

               Cow position:
               chr6:15243067-15242527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 36
               

               Conread position:
               151-682
               

               Cow position:
               chr6:24031591-24031048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 31
               

               Conread position:
               151-682
               

               Cow position:
               chr6:28083803-28084340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               345
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               86, 36
               

               Conread position:
               151-682
               

               Cow position:
               chr6:39358115-39358662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 31
               

               Conread position:
               151-682
               

               Cow position:
               chr6:49398401-49398944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 31
               

               Conread position:
               151-682
               

               Cow position:
               chr6:52478183-52478769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 31
               

               Conread position:
               151-684
               

               Cow position:
               chr6:323074-323639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               377
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               87, 31
               

               Conread position:
               152-557
               

               Cow position:
               chr6:63720419-63720004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               276
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               137, 30
               

               Conread position:
               153-669
               

               Cow position:
               chr6:45690392-45690923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 19
               

               Conread position:
               154-500
               

               Cow position:
               chr6:48803415-48803779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               39, 28
               

               Conread position:
               154-561
               

               Cow position:
               chr6:5113822-5114244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               277
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               67, 33
               

               Conread position:
               154-564
               

               Cow position:
               chr6:51581030-51581460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 30
               

               Conread position:
               154-575
               

               Cow position:
               chr6:50090870-50090423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 28
               

               Conread position:
               154-581
               

               Cow position:
               chr6:46859945-46860390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 28
               

               Conread position:
               154-583
               

               Cow position:
               chr6:36203046-36202603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 28
               

               Conread position:
               154-586
               

               Cow position:
               chr6:44194331-44194773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 17
               

               Conread position:
               154-594
               

               Cow position:
               chr6:54133036-54132582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 28
               

               Conread position:
               154-665
               

               Cow position:
               chr6:21587209-21587731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               347
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               114, 28
               

               Conread position:
               154-669
               

               Cow position:
               chr6:12338215-12337671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 28
               

               Conread position:
               154-682
               

               Cow position:
               chr6:51835623-51835076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 28
               

               Conread position:
               154-684
               

               Cow position:
               chr6:31535348-31535885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 28
               

               Conread position:
               157-506
               

               Cow position:
               chr6:17313960-17313586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               73, 30
               

               Conread position:
               157-670
               

               Cow position:
               chr6:65871253-65870710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 26
               

               Conread position:
               157-676
               

               Cow position:
               chr6:32866999-32867527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 25
               

               Conread position:
               157-682
               

               Cow position:
               chr6:15305793-15305262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 25
               

               Conread position:
               157-682
               

               Cow position:
               chr6:36196424-36195887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 15
               

               Conread position:
               158-680
               

               Cow position:
               chr6:28483238-28482689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 24
               

               Conread position:
               160-682
               

               Cow position:
               chr6:35842879-35842334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 22
               

               Conread position:
               162-561
               

               Cow position:
               chr6:21736685-21737081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               264
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               124, 20
               

               Conread position:
               169-595
               

               Cow position:
               chr6:26915538-26915093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 13
               

               Conread position:
               175-679
               

               Cow position:
               chr6:8637482-8636951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 326
               

               Conread position:
               179-495
               

               Cow position:
               chr6:38640435-38640094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               179-595
               

               Cow position:
               chr6:20097765-20098201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 59
               

               Conread position:
               184-684
               

               Cow position:
               chr6:63040004-63040514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               255, 0
               

               Conread position:
               189-684
               

               Cow position:
               chr6:54979830-54979330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               372, 0
               

               Conread position:
               193-488
               

               Cow position:
               chr6:37376348-37376651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               72, 32
               

               Conread position:
               200-558
               

               Cow position:
               chr6:37199353-37199741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               268
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               200-570
               

               Cow position:
               chr6:6401129-6400741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 266
               

               Conread position:
               224-682
               

               Cow position:
               chr6:4864398-4864865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               325
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               65, 14
               

               Conread position:
               261-682
               

               Cow position:
               chr6:12630120-12629687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               300
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               138, 22
               

               Conread position:
               262-684
               

               Cow position:
               chr6:30707947-30708376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               304, 0
               

               Conread position:
               266-547
               

               Cow position:
               chr6:30974150-30973855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               23, 90
               

               Conread position:
               266-564
               

               Cow position:
               chr6:23247858-23248165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 152
               

               Conread position:
               266-580
               

               Cow position:
               chr6:38614920-38614602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               23, 175
               

               Conread position:
               270-583
               

               Cow position:
               chr6:10254329-10254017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               99, 20
               

               Conread position:
               270-586
               

               Cow position:
               chr6:68049521-68049208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               227
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               171, 15
               

               Conread position:
               277-654
               

               Cow position:
               chr6:17248804-17248434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               78, 117
               

               Conread position:
               284-563
               

               Cow position:
               chr6:59069545-59069829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               284-565
               

               Cow position:
               chr6:528205-528479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               196, 64
               

               Conread position:
               284-609
               

               Cow position:
               chr6:22788538-22788201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               106, 88
               

               Conread position:
               284-647
               

               Cow position:
               chr6:34196071-34196440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               40, 76
               

               Conread position:
               284-657
               

               Cow position:
               chr6:56927280-56926895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               124, 88
               

               Conread position:
               284-682
               

               Cow position:
               chr6:36470483-36470892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 192
               

               Conread position:
               284-684
               

               Cow position:
               chr6:3720068-3719655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 84
               

               Conread position:
               287-472
               

               Cow position:
               chr6:61524129-61524310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               61, 104
               

               Conread position:
               287-490
               

               Cow position:
               chr6:12829149-12829354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               67, 92
               

               Conread position:
               287-505
               

               Cow position:
               chr6:57571555-57571330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               287-517
               

               Cow position:
               chr6:61608588-61608352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               287-521
               

               Cow position:
               chr6:48112272-48112045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               127, 10
               

               Conread position:
               287-522
               

               Cow position:
               chr6:6965322-6965543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               43, 30
               

               Conread position:
               287-537
               

               Cow position:
               chr6:8125402-8125157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               142, 112
               

               Conread position:
               287-540
               

               Cow position:
               chr6:1499719-1499460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               64, 54
               

               Conread position:
               287-547
               

               Cow position:
               chr6:47799369-47799113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               109, 200
               

               Conread position:
               287-557
               

               Cow position:
               chr6:12091917-12092179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               112, 84
               

               Conread position:
               287-557
               

               Cow position:
               chr6:21456607-21456885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 184
               

               Conread position:
               287-557
               

               Cow position:
               chr6:37467466-37467734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               78, 62
               

               Conread position:
               287-560
               

               Cow position:
               chr6:16423778-16423501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 181
               

               Conread position:
               287-564
               

               Cow position:
               chr6:21869573-21869847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               80, 185
               

               Conread position:
               287-574
               

               Cow position:
               chr6:52412935-52412645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               112, 36
               

               Conread position:
               287-577
               

               Cow position:
               chr6:54430906-54430600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               37, 87
               

               Conread position:
               287-582
               

               Cow position:
               chr6:53652116-53651815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               118, 48
               

               Conread position:
               287-583
               

               Cow position:
               chr6:14850638-14850936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               64, 20
               

               Conread position:
               287-583
               

               Cow position:
               chr6:28976964-28977256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               223
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               71, 63
               

               Conread position:
               287-583
               

               Cow position:
               chr6:37149265-37148972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               113, 181
               

               Conread position:
               287-583
               

               Cow position:
               chr6:45064941-45065231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               133, 62
               

               Conread position:
               287-585
               

               Cow position:
               chr6:21542399-21542093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 197
               

               Conread position:
               287-585
               

               Cow position:
               chr6:35613342-35613636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               217
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               28, 117
               

               Conread position:
               287-586
               

               Cow position:
               chr6:8787961-8788260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               81, 91
               

               Conread position:
               287-586
               

               Cow position:
               chr6:16746419-16746112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               112, 63
               

               Conread position:
               287-595
               

               Cow position:
               chr6:13040516-13040215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 45
               

               Conread position:
               287-617
               

               Cow position:
               chr6:2454190-2453847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               105, 79
               

               Conread position:
               287-620
               

               Cow position:
               chr6:40713427-40713763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               116, 62
               

               Conread position:
               287-623
               

               Cow position:
               chr6:60350216-60350565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               287-627
               

               Cow position:
               chr6:48282068-48281723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               66, 82
               

               Conread position:
               287-628
               

               Cow position:
               chr6:60474206-60473861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               76, 62
               

               Conread position:
               287-653
               

               Cow position:
               chr6:60057579-60057962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               264
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               112, 64
               

               Conread position:
               287-667
               

               Cow position:
               chr6:5302343-5302711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               99, 62
               

               Conread position:
               287-676
               

               Cow position:
               chr6:13307176-13307578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               113, 85
               

               Conread position:
               287-676
               

               Cow position:
               chr6:24962221-24961846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 139
               

               Conread position:
               287-676
               

               Cow position:
               chr6:35181181-35181573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 51
               

               Conread position:
               287-676
               

               Cow position:
               chr6:54867593-54867198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               281
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               68, 187
               

               Conread position:
               287-680
               

               Cow position:
               chr6:1770122-1770519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 63
               

               Conread position:
               287-680
               

               Cow position:
               chr6:36652498-36652105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 195
               

               Conread position:
               287-680
               

               Cow position:
               chr6:42565764-42565361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 49
               

               Conread position:
               287-682
               

               Cow position:
               chr6:1944789-1944403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 19
               

               Conread position:
               287-682
               

               Cow position:
               chr6:2547331-2546917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 256
               

               Conread position:
               287-682
               

               Cow position:
               chr6:6067626-6068015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               284
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               154, 62
               

               Conread position:
               287-682
               

               Cow position:
               chr6:6343502-6343101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 62
               

               Conread position:
               287-682
               

               Cow position:
               chr6:8209529-8209912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 37
               

               Conread position:
               287-682
               

               Cow position:
               chr6:9750978-9751372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               273, 63
               

               Conread position:
               287-682
               

               Cow position:
               chr6:11169774-11169381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 19
               

               Conread position:
               287-682
               

               Cow position:
               chr6:12551345-12550941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 9
               

               Conread position:
               287-682
               

               Cow position:
               chr6:47339280-47339683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               82, 93
               

               Conread position:
               287-682
               

               Cow position:
               chr6:56843233-56842833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 76
               

               Conread position:
               287-682
               

               Cow position:
               chr6:67968534-67968958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               288
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               287-683
               

               Cow position:
               chr6:26830752-26830349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               267
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               113, 85
               

               Conread position:
               287-684
               

               Cow position:
               chr6:76213-76621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               124, 85
               

               Conread position:
               287-684
               

               Cow position:
               chr6:445399-444998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 299
               

               Conread position:
               287-684
               

               Cow position:
               chr6:452711-452302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               264
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               84, 107
               

               Conread position:
               287-684
               

               Cow position:
               chr6:758454-758044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               270
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               113, 73
               

               Conread position:
               287-684
               

               Cow position:
               chr6:13493861-13494270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               271
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               122, 64
               

               Conread position:
               287-684
               

               Cow position:
               chr6:14134037-14133628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               272
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               121, 63
               

               Conread position:
               287-684
               

               Cow position:
               chr6:24004612-24004218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               277
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               287-684
               

               Cow position:
               chr6:24237124-24237532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               113, 14
               

               Conread position:
               287-684
               

               Cow position:
               chr6:39088843-39088443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               101, 81
               

               Conread position:
               287-684
               

               Cow position:
               chr6:42482108-42481702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               266
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               131, 64
               

               Conread position:
               287-684
               

               Cow position:
               chr6:45592378-45591966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               272
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               113, 64
               

               Conread position:
               287-684
               

               Cow position:
               chr6:49580327-49579918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               271
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               113, 85
               

               Conread position:
               287-684
               

               Cow position:
               chr6:49795188-49794779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               273
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               113, 64
               

               Conread position:
               287-684
               

               Cow position:
               chr6:59508433-59508018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               282
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               61, 48
               

               Conread position:
               288-577
               

               Cow position:
               chr6:35415440-35415740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               47, 251
               

               Conread position:
               288-682
               

               Cow position:
               chr6:6943604-6944000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               267
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               53, 152
               

               Conread position:
               289-584
               

               Cow position:
               chr6:60239320-60239614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               8, 61
               

               Conread position:
               289-586
               

               Cow position:
               chr6:56376274-56376575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               54, 46
               

               Conread position:
               289-677
               

               Cow position:
               chr6:52556406-52556793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               269
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               129, 43
               

               Conread position:
               289-680
               

               Cow position:
               chr6:44371871-44372263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               275
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               59, 45
               

               Conread position:
               289-682
               

               Cow position:
               chr6:34076104-34075700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 202
               

               Conread position:
               289-682
               

               Cow position:
               chr6:55475329-55474923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 43
               

               Conread position:
               290-529
               

               Cow position:
               chr6:47640359-47640604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               109, 134
               

               Conread position:
               290-561
               

               Cow position:
               chr6:5609374-5609639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               290-564
               

               Cow position:
               chr6:51463560-51463818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               61, 87
               

               Conread position:
               290-583
               

               Cow position:
               chr6:14949408-14949706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               216
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               74, 60
               

               Conread position:
               290-595
               

               Cow position:
               chr6:9736583-9736876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 54
               

               Conread position:
               290-595
               

               Cow position:
               chr6:54990928-54991229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 163
               

               Conread position:
               290-647
               

               Cow position:
               chr6:54368831-54369188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 59
               

               Conread position:
               290-652
               

               Cow position:
               chr6:63272538-63272914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 61
               

               Conread position:
               290-666
               

               Cow position:
               chr6:67045025-67044660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               279
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               146, 48
               

               Conread position:
               290-681
               

               Cow position:
               chr6:65871963-65871592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               194, 42
               

               Conread position:
               290-682
               

               Cow position:
               chr6:18961442-18961847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 222
               

               Conread position:
               290-682
               

               Cow position:
               chr6:26728459-26728853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 45
               

               Conread position:
               290-682
               

               Cow position:
               chr6:66531748-66532129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               276
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               110, 97
               

               Conread position:
               291-446
               

               Cow position:
               chr6:37332180-37332021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               63, 91
               

               Conread position:
               291-476
               

               Cow position:
               chr6:58597434-58597620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               64, 98
               

               Conread position:
               291-619
               

               Cow position:
               chr6:52408584-52408926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               60, 87
               

               Conread position:
               291-681
               

               Cow position:
               chr6:6642536-6642914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               271
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               74, 25
               

               Conread position:
               291-682
               

               Cow position:
               chr6:49410625-49411006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 103
               

               Conread position:
               292-482
               

               Cow position:
               chr6:50976119-50975936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               292-510
               

               Cow position:
               chr6:46282933-46283146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               39, 47
               

               Conread position:
               292-564
               

               Cow position:
               chr6:9452699-9452971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               62, 255
               

               Conread position:
               292-641
               

               Cow position:
               chr6:57164500-57164141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               77, 193
               

               Conread position:
               292-669
               

               Cow position:
               chr6:35990165-35990542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 59
               

               Conread position:
               292-670
               

               Cow position:
               chr6:36299103-36299493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               263
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-675
               

               Cow position:
               chr6:44145723-44146118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-675
               

               Cow position:
               chr6:62851205-62851597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               260
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               100, 58
               

               Conread position:
               292-682
               

               Cow position:
               chr6:43998934-43999336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               274
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               98, 80
               

               Conread position:
               292-682
               

               Cow position:
               chr6:51870159-51869758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               269
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-682
               

               Cow position:
               chr6:58590093-58589709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               64, 192
               

               Conread position:
               292-684
               

               Cow position:
               chr6:3094881-3095285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-684
               

               Cow position:
               chr6:7137117-7137521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               271
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               84, 59
               

               Conread position:
               292-684
               

               Cow position:
               chr6:9226741-9226339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               264
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-684
               

               Cow position:
               chr6:10045430-10045026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               271
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-684
               

               Cow position:
               chr6:13946088-13945684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               263
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-684
               

               Cow position:
               chr6:14929651-14929265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               108, 59
               

               Conread position:
               292-684
               

               Cow position:
               chr6:19516075-19515671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               269
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-684
               

               Cow position:
               chr6:23427268-23426864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               265
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-684
               

               Cow position:
               chr6:23567383-23567787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               269
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               108, 80
               

               Conread position:
               292-684
               

               Cow position:
               chr6:28066217-28065808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               264
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               108, 59
               

               Conread position:
               292-684
               

               Cow position:
               chr6:28184096-28184500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               272
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               108, 59
               

               Conread position:
               292-684
               

               Cow position:
               chr6:31082112-31081720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               181, 76
               

               Conread position:
               292-684
               

               Cow position:
               chr6:46224462-46224864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               108, 59
               

               Conread position:
               292-684
               

               Cow position:
               chr6:52425095-52424692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               108, 62
               

               Conread position:
               292-684
               

               Cow position:
               chr6:58940149-58940551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               112, 59
               

               Conread position:
               293-674
               

               Cow position:
               chr6:48170008-48169625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 56
               

               Conread position:
               293-682
               

               Cow position:
               chr6:44099157-44098761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 56
               

               Conread position:
               293-684
               

               Cow position:
               chr6:58606355-58605953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               267
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               82, 62
               

               Conread position:
               294-546
               

               Cow position:
               chr6:47989241-47989002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               189, 55
               

               Conread position:
               295-595
               

               Cow position:
               chr6:14886605-14886914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               295-609
               

               Cow position:
               chr6:52463098-52462772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               295-631
               

               Cow position:
               chr6:25347698-25348046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               295-632
               

               Cow position:
               chr6:32298397-32298745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               108, 77
               

               Conread position:
               295-678
               

               Cow position:
               chr6:56888625-56888239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               93, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:2898984-2898583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:12972616-12972217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               264
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               78, 98
               

               Conread position:
               295-684
               

               Cow position:
               chr6:14198866-14198467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 71
               

               Conread position:
               295-684
               

               Cow position:
               chr6:25096096-25095695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:25376481-25376079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 71
               

               Conread position:
               295-684
               

               Cow position:
               chr6:25410678-25410277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               270
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               90, 49
               

               Conread position:
               295-684
               

               Cow position:
               chr6:27939999-27939598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:33897164-33897555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               105, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:36928729-36928324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               295-684
               

               Cow position:
               chr6:38061833-38061433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               274
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               95, 48
               

               Conread position:
               295-684
               

               Cow position:
               chr6:40449451-40449846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               117, 56
               

               Conread position:
               295-684
               

               Cow position:
               chr6:41034134-41033734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               95, 75
               

               Conread position:
               295-684
               

               Cow position:
               chr6:45976721-45976320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:48291014-48290618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               273
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:49684494-49684895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               275
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:55388957-55388558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               270
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               105, 77
               

               Conread position:
               295-684
               

               Cow position:
               chr6:59052640-59052239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               273
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               95, 71
               

               Conread position:
               295-684
               

               Cow position:
               chr6:59835300-59834899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               270
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               105, 71
               

               Conread position:
               296-681
               

               Cow position:
               chr6:16626010-16625622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               258
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               58, 99
               

               Conread position:
               296-682
               

               Cow position:
               chr6:8318093-8318492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 195
               

               Conread position:
               297-683
               

               Cow position:
               chr6:43050229-43049833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               268
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               117, 75
               

               Conread position:
               300-583
               

               Cow position:
               chr6:67304868-67304577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               59, 50
               

               Conread position:
               300-595
               

               Cow position:
               chr6:53711178-53710879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               99, 55
               

               Conread position:
               300-680
               

               Cow position:
               chr6:23986682-23987062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               269
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               55, 135
               

               Conread position:
               300-682
               

               Cow position:
               chr6:5957965-5958342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 49
               

               Conread position:
               300-682
               

               Cow position:
               chr6:13741764-13741371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 75
               

               Conread position:
               300-682
               

               Cow position:
               chr6:46206076-46205691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 49
               

               Conread position:
               300-684
               

               Cow position:
               chr6:10599180-10598800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               92, 72
               

               Conread position:
               300-684
               

               Cow position:
               chr6:65863540-65863145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               269
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               90, 49
               

               Conread position:
               303-657
               

               Cow position:
               chr6:57504824-57504462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               33, 49
               

               Conread position:
               305-541
               

               Cow position:
               chr6:57274525-57274290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               87, 63
               

               Conread position:
               306-583
               

               Cow position:
               chr6:56902921-56902641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               48, 29
               

               Conread position:
               306-679
               

               Cow position:
               chr6:561680-561296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               91, 45
               

               Conread position:
               306-682
               

               Cow position:
               chr6:14696316-14696701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 45
               

               Conread position:
               306-682
               

               Cow position:
               chr6:14838968-14839353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               260
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               51, 45
               

               Conread position:
               306-682
               

               Cow position:
               chr6:42519040-42518641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               277
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               53, 42
               

               Conread position:
               306-684
               

               Cow position:
               chr6:7449706-7449316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               261
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               94, 66
               

               Conread position:
               306-684
               

               Cow position:
               chr6:52430971-52431362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 53
               

               Conread position:
               306-684
               

               Cow position:
               chr6:62665987-62665597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               261
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               94, 66
               

               Conread position:
               307-564
               

               Cow position:
               chr6:17997263-17997517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               86, 43
               

               Conread position:
               307-578
               

               Cow position:
               chr6:34031717-34031448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               102, 58
               

               Conread position:
               307-583
               

               Cow position:
               chr6:56041567-56041847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               41, 24
               

               Conread position:
               307-585
               

               Cow position:
               chr6:9323205-9322932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               172, 59
               

               Conread position:
               307-587
               

               Cow position:
               chr6:130105-130393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               307-630
               

               Cow position:
               chr6:47150848-47150504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               92, 193
               

               Conread position:
               307-646
               

               Cow position:
               chr6:7130832-7131162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 94
               

               Conread position:
               307-660
               

               Cow position:
               chr6:58316105-58315742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               41, 183
               

               Conread position:
               307-682
               

               Cow position:
               chr6:37634845-37634464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 156
               

               Conread position:
               308-583
               

               Cow position:
               chr6:49685640-49685360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               91, 143
               

               Conread position:
               308-595
               

               Cow position:
               chr6:46638241-46637945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-603
               

               Cow position:
               chr6:41622652-41622956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-620
               

               Cow position:
               chr6:43429804-43430128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-622
               

               Cow position:
               chr6:5279906-5280226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               68, 85
               

               Conread position:
               308-627
               

               Cow position:
               chr6:43896613-43896944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-631
               

               Cow position:
               chr6:54900162-54899827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-634
               

               Cow position:
               chr6:56808030-56808368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               82, 60
               

               Conread position:
               308-638
               

               Cow position:
               chr6:32778470-32778812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               92, 59
               

               Conread position:
               308-647
               

               Cow position:
               chr6:47387556-47387204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               92, 43
               

               Conread position:
               308-653
               

               Cow position:
               chr6:58173240-58172890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 84
               

               Conread position:
               308-669
               

               Cow position:
               chr6:32054479-32054848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-682
               

               Cow position:
               chr6:31635633-31636014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 134
               

               Conread position:
               308-684
               

               Cow position:
               chr6:125899-126287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 59
               

               Conread position:
               308-684
               

               Cow position:
               chr6:443719-444107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               263
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               100, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:595677-596065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               263
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               95, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:1797834-1797446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:1956713-1957100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               82, 43
               

               Conread position:
               308-684
               

               Cow position:
               chr6:2196897-2196505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               259
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:2389473-2389856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               257
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               308-684
               

               Cow position:
               chr6:2867251-2867639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               92, 43
               

               Conread position:
               308-684
               

               Cow position:
               chr6:3157170-3157555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               82, 41
               

               Conread position:
               308-684
               

               Cow position:
               chr6:5366626-5367014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:5752040-5751653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               261
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               46, 65
               

               Conread position:
               308-684
               

               Cow position:
               chr6:6558080-6557692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:6577715-6578103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:8527355-8526967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:9235721-9235333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               263
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:10014006-10013618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               260
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               101, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:10535730-10536118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               263
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:10866149-10865761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               261
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:11452658-11453046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               261
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:12998625-12998237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:13489605-13489215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               263
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:13531873-13531485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               265
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:14388517-14388905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:15881616-15882003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:17631560-17631949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               97, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:17934967-17935355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:18418393-18418781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:18648705-18649093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               259
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:19819651-19819265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               258
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:20174591-20174203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:21164512-21164124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:21857944-21857557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               261
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               92, 43
               

               Conread position:
               308-684
               

               Cow position:
               chr6:22627519-22627907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               80, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:22736501-22736885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:24757294-24757677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               46, 65
               

               Conread position:
               308-684
               

               Cow position:
               chr6:25207645-25207257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               264
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               88, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:25363760-25363372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:26916421-26916054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               254
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               101, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:27174053-27173662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               84, 65
               

               Conread position:
               308-684
               

               Cow position:
               chr6:27541770-27541382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:31192267-31192656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:34016514-34016902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               92, 43
               

               Conread position:
               308-684
               

               Cow position:
               chr6:36259163-36258775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               83, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:36902219-36901831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               264
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:37217827-37217439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:37389518-37389130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               260
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:37737129-37736741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:38053948-38053560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:38916830-38917218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:40279261-40278873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               259
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:40710584-40710196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:40912353-40912729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               257
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               308-684
               

               Cow position:
               chr6:41822628-41823016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:43604830-43604442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:43921838-43921457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               155, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:45129864-45130252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               82, 58
               

               Conread position:
               308-684
               

               Cow position:
               chr6:45695070-45694682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:45722910-45723303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               308-684
               

               Cow position:
               chr6:45752142-45751754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:45764912-45765300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:45938487-45938100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               90, 65
               

               Conread position:
               308-684
               

               Cow position:
               chr6:49962958-49963342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:55362163-55361777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:55721377-55720989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:57522382-57521996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               92, 43
               

               Conread position:
               308-684
               

               Cow position:
               chr6:57795838-57796226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:58762156-58761764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               267
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:61258069-61257680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:62038599-62038216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               258
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               63, 86
               

               Conread position:
               308-684
               

               Cow position:
               chr6:62322972-62323361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               60, 41
               

               Conread position:
               308-684
               

               Cow position:
               chr6:63178328-63177941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               82, 36
               

               Conread position:
               308-684
               

               Cow position:
               chr6:64337563-64337951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:67554440-67554051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               265
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               110, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:68339741-68340128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               266
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               92, 64
               

               Conread position:
               308-684
               

               Cow position:
               chr6:68870720-68871108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               82, 64
               

               Conread position:
               309-524
               

               Cow position:
               chr6:12542876-12543095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               46, 176
               

               Conread position:
               309-526
               

               Cow position:
               chr6:44984384-44984162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               102, 41
               

               Conread position:
               309-531
               

               Cow position:
               chr6:35993638-35993408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               49, 36
               

               Conread position:
               309-539
               

               Cow position:
               chr6:61137429-61137194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               100, 132
               

               Conread position:
               309-558
               

               Cow position:
               chr6:53731578-53731325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               42, 181
               

               Conread position:
               309-561
               

               Cow position:
               chr6:57405071-57405323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               90, 40
               

               Conread position:
               309-564
               

               Cow position:
               chr6:38641551-38641296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               42, 159
               

               Conread position:
               309-582
               

               Cow position:
               chr6:41733680-41733403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               84, 186
               

               Conread position:
               309-629
               

               Cow position:
               chr6:52562125-52562442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               130, 42
               

               Conread position:
               309-641
               

               Cow position:
               chr6:38218722-38218378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 40
               

               Conread position:
               309-656
               

               Cow position:
               chr6:52248078-52248431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               84, 56
               

               Conread position:
               309-669
               

               Cow position:
               chr6:25821951-25822317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               59, 86
               

               Conread position:
               309-680
               

               Cow position:
               chr6:19681471-19681841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 82
               

               Conread position:
               309-680
               

               Cow position:
               chr6:28148889-28148519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               102, 51
               

               Conread position:
               309-680
               

               Cow position:
               chr6:51674964-51674585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               270
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               90, 40
               

               Conread position:
               309-680
               

               Cow position:
               chr6:60930844-60931222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               271
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               98, 42
               

               Conread position:
               309-681
               

               Cow position:
               chr6:18048970-18049351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 42
               

               Conread position:
               309-682
               

               Cow position:
               chr6:5445677-5445321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               260
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               56, 93
               

               Conread position:
               309-682
               

               Cow position:
               chr6:6060518-6060884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 36
               

               Conread position:
               309-682
               

               Cow position:
               chr6:8804475-8804870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               275
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               90, 181
               

               Conread position:
               309-682
               

               Cow position:
               chr6:10695917-10695533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 47
               

               Conread position:
               309-682
               

               Cow position:
               chr6:11789443-11789075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               43, 24
               

               Conread position:
               309-682
               

               Cow position:
               chr6:14958287-14958669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 295
               

               Conread position:
               309-682
               

               Cow position:
               chr6:16675858-16675499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               42, 80
               

               Conread position:
               309-682
               

               Cow position:
               chr6:24781501-24781891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 56
               

               Conread position:
               309-682
               

               Cow position:
               chr6:40032245-40031866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 201
               

               Conread position:
               309-682
               

               Cow position:
               chr6:47540585-47540198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 13
               

               Conread position:
               309-682
               

               Cow position:
               chr6:58074104-58073716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 80
               

               Conread position:
               309-682
               

               Cow position:
               chr6:66303786-66304166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               266
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               46, 185
               

               Conread position:
               309-684
               

               Cow position:
               chr6:3575496-3575110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               269
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               83, 63
               

               Conread position:
               309-684
               

               Cow position:
               chr6:6568035-6568413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               245
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               94, 63
               

               Conread position:
               309-684
               

               Cow position:
               chr6:11034049-11034436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               91, 63
               

               Conread position:
               309-684
               

               Cow position:
               chr6:62924944-62925322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 40
               

               Conread position:
               310-556
               

               Cow position:
               chr6:57680383-57680629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               84, 34
               

               Conread position:
               310-577
               

               Cow position:
               chr6:55935924-55936195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               35, 131
               

               Conread position:
               310-585
               

               Cow position:
               chr6:25773332-25773608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               52, 88
               

               Conread position:
               310-595
               

               Cow position:
               chr6:2423798-2423512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               36, 94
               

               Conread position:
               310-642
               

               Cow position:
               chr6:6201477-6201161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               237
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               126, 30
               

               Conread position:
               310-644
               

               Cow position:
               chr6:62479107-62479454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               42, 118
               

               Conread position:
               310-670
               

               Cow position:
               chr6:16738072-16737706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 45
               

               Conread position:
               310-679
               

               Cow position:
               chr6:57686204-57685835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 38
               

               Conread position:
               310-680
               

               Cow position:
               chr6:28148307-28147931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               51, 39
               

               Conread position:
               310-682
               

               Cow position:
               chr6:34549455-34549082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               53, 101
               

               Conread position:
               310-682
               

               Cow position:
               chr6:61631556-61631940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 49
               

               Conread position:
               311-551
               

               Cow position:
               chr6:60819565-60819323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               76, 30
               

               Conread position:
               311-564
               

               Cow position:
               chr6:66131359-66131106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               71, 40
               

               Conread position:
               311-583
               

               Cow position:
               chr6:38441227-38440957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               88, 38
               

               Conread position:
               311-583
               

               Cow position:
               chr6:52025598-52025876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               58, 117
               

               Conread position:
               311-682
               

               Cow position:
               chr6:607313-606935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 71
               

               Conread position:
               311-682
               

               Cow position:
               chr6:13592761-13592402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               49, 109
               

               Conread position:
               311-684
               

               Cow position:
               chr6:64303593-64303953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               85, 61
               

               Conread position:
               312-682
               

               Cow position:
               chr6:53345841-53345469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 39
               

               Conread position:
               312-682
               

               Cow position:
               chr6:60456880-60456504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 90
               

               Conread position:
               312-684
               

               Cow position:
               chr6:33883883-33884262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               258
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               98, 60
               

               Conread position:
               314-575
               

               Cow position:
               chr6:416155-415882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               48, 37
               

               Conread position:
               315-557
               

               Cow position:
               chr6:58732255-58732509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               316-535
               

               Cow position:
               chr6:47355870-47355651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               40, 80
               

               Conread position:
               316-541
               

               Cow position:
               chr6:18968733-18968952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               93, 35
               

               Conread position:
               316-613
               

               Cow position:
               chr6:65838823-65839132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               84, 56
               

               Conread position:
               316-628
               

               Cow position:
               chr6:62418479-62418803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               74, 56
               

               Conread position:
               316-640
               

               Cow position:
               chr6:41798254-41798590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               74, 56
               

               Conread position:
               316-670
               

               Cow position:
               chr6:22877109-22877469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 85
               

               Conread position:
               316-684
               

               Cow position:
               chr6:13619420-13619800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 55
               

               Conread position:
               316-684
               

               Cow position:
               chr6:16417493-16417870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               87, 35
               

               Conread position:
               316-684
               

               Cow position:
               chr6:21718731-21719109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               60, 77
               

               Conread position:
               316-684
               

               Cow position:
               chr6:40250604-40250983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               84, 56
               

               Conread position:
               316-684
               

               Cow position:
               chr6:67818151-67818529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               94, 33
               

               Conread position:
               317-587
               

               Cow position:
               chr6:49002686-49002953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               52, 38
               

               Conread position:
               318-670
               

               Cow position:
               chr6:20230781-20231140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 157
               

               Conread position:
               320-679
               

               Cow position:
               chr6:58076273-58075904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 31
               

               Conread position:
               321-583
               

               Cow position:
               chr6:30825989-30826259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               29, 41
               

               Conread position:
               321-683
               

               Cow position:
               chr6:33895235-33895581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               13, 25
               

               Conread position:
               322-568
               

               Cow position:
               chr6:24515157-24515400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               244, 33
               

               Conread position:
               324-570
               

               Cow position:
               chr6:20157372-20157117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               34, 26
               

               Conread position:
               324-681
               

               Cow position:
               chr6:3978623-3978987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 25
               

               Conread position:
               324-682
               

               Cow position:
               chr6:25407353-25407733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 25
               

               Conread position:
               327-542
               

               Cow position:
               chr6:44566450-44566232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               82, 24
               

               Conread position:
               327-624
               

               Cow position:
               chr6:35471482-35471795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               222
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               327-684
               

               Cow position:
               chr6:11288272-11288647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               256
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               8, 44
               

               Conread position:
               328-569
               

               Cow position:
               chr6:8187485-8187726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               108, 21
               

               Conread position:
               328-680
               

               Cow position:
               chr6:63716432-63716080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               72, 23
               

               Conread position:
               330-677
               

               Cow position:
               chr6:55594424-55594070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               243
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               38, 150
               

               Conread position:
               330-684
               

               Cow position:
               chr6:41161661-41162030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               254
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               78, 42
               

               Conread position:
               332-564
               

               Cow position:
               chr6:48425286-48425523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               9, 163
               

               Conread position:
               333-684
               

               Cow position:
               chr6:25218967-25218600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               20, 149
               

               Conread position:
               333-684
               

               Cow position:
               chr6:38872343-38872707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               33, 98
               

               Conread position:
               334-564
               

               Cow position:
               chr6:6098249-6098484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               14, 139
               

               Conread position:
               335-523
               

               Cow position:
               chr6:633329-633522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               57, 10
               

               Conread position:
               335-547
               

               Cow position:
               chr6:51893472-51893690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               78, 16
               

               Conread position:
               335-561
               

               Cow position:
               chr6:46400385-46400604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               74, 18
               

               Conread position:
               335-564
               

               Cow position:
               chr6:61130449-61130684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               65, 15
               

               Conread position:
               335-614
               

               Cow position:
               chr6:64449418-64449133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               65, 14
               

               Conread position:
               335-618
               

               Cow position:
               chr6:64131822-64131527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               55, 37
               

               Conread position:
               335-651
               

               Cow position:
               chr6:61489365-61489051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               25, 8
               

               Conread position:
               335-657
               

               Cow position:
               chr6:16659913-16659593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               28, 14
               

               Conread position:
               335-667
               

               Cow position:
               chr6:48567316-48567654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 67
               

               Conread position:
               335-669
               

               Cow position:
               chr6:60859269-60859617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               335-679
               

               Cow position:
               chr6:67544268-67544616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 33
               

               Conread position:
               335-682
               

               Cow position:
               chr6:457207-456854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               75, 45
               

               Conread position:
               335-682
               

               Cow position:
               chr6:6614465-6614108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 15
               

               Conread position:
               335-682
               

               Cow position:
               chr6:16411219-16410869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               335-682
               

               Cow position:
               chr6:67187711-67187370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               249
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               85, 100
               

               Conread position:
               335-684
               

               Cow position:
               chr6:1911350-1910989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               65, 37
               

               Conread position:
               335-684
               

               Cow position:
               chr6:11020839-11020479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               248
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               53, 8
               

               Conread position:
               335-684
               

               Cow position:
               chr6:11402501-11402141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               65, 37
               

               Conread position:
               335-684
               

               Cow position:
               chr6:14225163-14225522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               57, 37
               

               Conread position:
               335-684
               

               Cow position:
               chr6:18502632-18502993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               335-684
               

               Cow position:
               chr6:20580597-20580958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               55, 37
               

               Conread position:
               335-684
               

               Cow position:
               chr6:24263299-24262938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               65, 37
               

               Conread position:
               335-684
               

               Cow position:
               chr6:28700383-28700744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               74, 37
               

               Conread position:
               335-684
               

               Cow position:
               chr6:31567667-31568028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               65, 16
               
UCSC Genome Browser
               Conread position:
               335-684
               

               Cow position:
               chr6:46607327-46607688 (view  custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               57, 37
               
UCSC Genome Browser
               
               
               
Conread position: 335-684

               
               
               
Cow position: chr6:52482527-52482166 (view  custom track)

               
               
               
Alignm length: 365

               
               
               
Alignm identity: 252

               
               
               
Alignm E-value: 5.04467e-44

               
               
               
Alignm gaps (pig, cow): 55, 37
UCSC Genome Browser
               
               
               
Conread position: 335-684

               
               
               
Cow position: chr6:67403186-67403547 (view  custom track)

               
               
               
Alignm length: 364

               
               
               
Alignm identity: 247

               
               
               
Alignm E-value: 4.00001e-41

               
               
               
Alignm gaps (pig, cow): 65, 38

               
               
               Conread position:336-681
               
               
               Cow position:chr6:27851681-27852030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:336-684
               
               
               Cow position:chr6:8753276-8753637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):61, 349

               
               
               Conread position:337-608
               
               
               Cow position:chr6:21230996-21230716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:337-617
               
               
               Cow position:chr6:11771882-11772171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:337-632
               
               
               Cow position:chr6:1273332-1273634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:337-638
               
               
               Cow position:chr6:61629673-61629987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:337-650
               
               
               Cow position:chr6:38257126-38257450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:337-658
               
               
               Cow position:chr6:45775374-45775700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:337-668
               
               
               Cow position:chr6:43014151-43014494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:337-676
               
               
               Cow position:chr6:57596968-57597320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:337-679
               
               
               Cow position:chr6:31753075-31752728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:337-681
               
               
               Cow position:chr6:23117369-23117725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:337-681
               
               
               Cow position:chr6:47384032-47383676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:337-681
               
               
               Cow position:chr6:62592530-62592886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:337-682
               
               
               Cow position:chr6:3153390-3153035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:337-682
               
               
               Cow position:chr6:46634279-46633936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:337-684
               
               
               Cow position:chr6:2668285-2668637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):145, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:7466472-7466830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:7994442-7994810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:8195322-8194961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:8283619-8283956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:10107679-10107321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:337-684
               
               
               Cow position:chr6:11868757-11869116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:12662150-12662509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:12947324-12947683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:16049123-16049475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:337-684
               
               
               Cow position:chr6:16646051-16645692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:337-684
               
               
               Cow position:chr6:21831490-21831839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:23878875-23879238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:28343673-28343322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:31520618-31520259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:33489055-33489413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:40357695-40358056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:337-684
               
               
               Cow position:chr6:43404619-43404261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:53542290-53542648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:53740472-53740112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:54201865-54202223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:337-684
               
               
               Cow position:chr6:54886437-54886794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:337-684
               
               
               Cow position:chr6:55040188-55040546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:337-684
               
               
               Cow position:chr6:55239871-55239511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:337-684
               
               
               Cow position:chr6:56079739-56080096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:337-684
               
               
               Cow position:chr6:59577378-59577020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:338-555
               
               
               Cow position:chr6:53519599-53519816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:338-682
               
               
               Cow position:chr6:54647496-54647852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:339-621
               
               
               Cow position:chr6:40774322-40774611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:339-645
               
               
               Cow position:chr6:20951989-20951669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:339-660
               
               
               Cow position:chr6:47039053-47039378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 213

               
               
               Conread position:339-669
               
               
               Cow position:chr6:28111662-28112002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:339-669
               
               
               Cow position:chr6:28276690-28276346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:339-682
               
               
               Cow position:chr6:20215216-20215573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:339-682
               
               
               Cow position:chr6:35872555-35872912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 346

               
               
               Conread position:339-684
               
               
               Cow position:chr6:707174-706815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:339-684
               
               
               Cow position:chr6:1264628-1264280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:339-684
               
               
               Cow position:chr6:2110087-2110443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 290

               
               
               Conread position:339-684
               
               
               Cow position:chr6:3444644-3444996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:339-684
               
               
               Cow position:chr6:4948962-4948613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:339-684
               
               
               Cow position:chr6:5944273-5944630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:339-684
               
               
               Cow position:chr6:15275066-15275420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:339-684
               
               
               Cow position:chr6:35103308-35103653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):67, 114

               
               
               Conread position:339-684
               
               
               Cow position:chr6:48872183-48872535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):58, 148

               
               
               Conread position:339-684
               
               
               Cow position:chr6:55581967-55582326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 64

               
               
               Conread position:339-684
               
               
               Cow position:chr6:60877472-60877116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:339-684
               
               
               Cow position:chr6:65845229-65844877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):58, 148

               
               
               Conread position:340-547
               
               
               Cow position:chr6:37246400-37246615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:340-658
               
               
               Cow position:chr6:31526067-31525749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:340-676
               
               
               Cow position:chr6:24902115-24902458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:340-682
               
               
               Cow position:chr6:38776624-38776274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:340-684
               
               
               Cow position:chr6:6769301-6768948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:341-674
               
               
               Cow position:chr6:24649875-24649535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:341-680
               
               
               Cow position:chr6:29077749-29077404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:341-684
               
               
               Cow position:chr6:24125261-24125612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:342-684
               
               
               Cow position:chr6:327181-327542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:342-684
               
               
               Cow position:chr6:2090433-2090079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:342-684
               
               
               Cow position:chr6:18802885-18803238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:342-684
               
               
               Cow position:chr6:20268687-20268348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:342-684
               
               
               Cow position:chr6:40549526-40549880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:342-684
               
               
               Cow position:chr6:46948986-46948633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:342-684
               
               
               Cow position:chr6:47675147-47674794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:342-684
               
               
               Cow position:chr6:53271829-53271475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:342-684
               
               
               Cow position:chr6:65920572-65920938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:343-566
               
               
               Cow position:chr6:65702383-65702605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:343-684
               
               
               Cow position:chr6:51734252-51733902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:343-684
               
               
               Cow position:chr6:56440906-56441259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:344-628
               
               
               Cow position:chr6:13603486-13603194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:344-631
               
               
               Cow position:chr6:2832856-2833151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:344-667
               
               
               Cow position:chr6:17557400-17557063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:344-682
               
               
               Cow position:chr6:66566475-66566129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:344-684
               
               
               Cow position:chr6:11720755-11721107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:344-684
               
               
               Cow position:chr6:46161502-46161853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:344-684
               
               
               Cow position:chr6:60066499-60066144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:345-557
               
               
               Cow position:chr6:33277064-33276844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 178

               
               
               Conread position:345-583
               
               
               Cow position:chr6:66433958-66433723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):90, 5

               
               
               Conread position:345-649
               
               
               Cow position:chr6:12390114-12389805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:345-667
               
               
               Cow position:chr6:15137004-15137332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:345-670
               
               
               Cow position:chr6:1538815-1538489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:345-670
               
               
               Cow position:chr6:47624943-47625273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:345-680
               
               
               Cow position:chr6:50423389-50423725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:345-680
               
               
               Cow position:chr6:64721307-64720971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:345-682
               
               
               Cow position:chr6:20452121-20451780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:345-684
               
               
               Cow position:chr6:1293257-1293594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):52, 108

               
               
               Conread position:345-684
               
               
               Cow position:chr6:8206356-8206008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:345-684
               
               
               Cow position:chr6:8207324-8207677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):45, 58

               
               
               Conread position:345-684
               
               
               Cow position:chr6:20552084-20552432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:345-684
               
               
               Cow position:chr6:26413397-26413054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:345-684
               
               
               Cow position:chr6:33863780-33863427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):45, 58

               
               
               Conread position:345-684
               
               
               Cow position:chr6:58748234-58747882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):52, 292

               
               
               Conread position:346-682
               
               
               Cow position:chr6:34842541-34842886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:346-684
               
               
               Cow position:chr6:40814532-40814183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:348-562
               
               
               Cow position:chr6:59620685-59620469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 140

               
               
               Conread position:348-682
               
               
               Cow position:chr6:55689057-55688721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 180

               
               
               Conread position:349-557
               
               
               Cow position:chr6:44377285-44377070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 161

               
               
               Conread position:349-575
               
               
               Cow position:chr6:48344347-48344111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:349-578
               
               
               Cow position:chr6:1907556-1907319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:349-586
               
               
               Cow position:chr6:7824778-7824535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:349-669
               
               
               Cow position:chr6:5095529-5095868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 145

               
               
               Conread position:349-671
               
               
               Cow position:chr6:30285705-30285373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:349-682
               
               
               Cow position:chr6:619572-619221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 90

               
               
               Conread position:349-682
               
               
               Cow position:chr6:1886648-1886974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:349-682
               
               
               Cow position:chr6:54807243-54806896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:349-684
               
               
               Cow position:chr6:6181559-6181905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:349-684
               
               
               Cow position:chr6:67429869-67430218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 200

               
               
               Conread position:350-558
               
               
               Cow position:chr6:46865574-46865789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 138

               
               
               Conread position:350-566
               
               
               Cow position:chr6:60442433-60442215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:350-617
               
               
               Cow position:chr6:54294121-54293849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:350-681
               
               
               Cow position:chr6:63047593-63047251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 138

               
               
               Conread position:350-684
               
               
               Cow position:chr6:7216849-7216503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):14, 143

               
               
               Conread position:350-684
               
               
               Cow position:chr6:40450778-40450441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):58, 112

               
               
               Conread position:350-684
               
               
               Cow position:chr6:49706592-49706927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 138

               
               
               Conread position:351-578
               
               
               Cow position:chr6:5462047-5462268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:351-583
               
               
               Cow position:chr6:10636186-10635952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:351-591
               
               
               Cow position:chr6:54884896-54885146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 139

               
               
               Conread position:351-667
               
               
               Cow position:chr6:55842143-55842472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:351-669
               
               
               Cow position:chr6:12500872-12500543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:351-682
               
               
               Cow position:chr6:9737103-9737441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:351-682
               
               
               Cow position:chr6:31879369-31879691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:351-684
               
               
               Cow position:chr6:47392-47734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:351-684
               
               
               Cow position:chr6:1816849-1817194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:351-684
               
               
               Cow position:chr6:27525836-27526184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:352-544
               
               
               Cow position:chr6:26909850-26910051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 54

               
               
               Conread position:352-670
               
               
               Cow position:chr6:12387313-12387635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):51, 135

               
               
               Conread position:352-684
               
               
               Cow position:chr6:38993628-38993970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:353-595
               
               
               Cow position:chr6:40138708-40138942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:353-682
               
               
               Cow position:chr6:16634205-16634536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):8, 196

               
               
               Conread position:353-682
               
               
               Cow position:chr6:24652181-24652507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:353-684
               
               
               Cow position:chr6:55538113-55538452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:354-670
               
               
               Cow position:chr6:33851787-33852098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:354-678
               
               
               Cow position:chr6:20255389-20255703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:354-681
               
               
               Cow position:chr6:60153047-60152710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 129

               
               
               Conread position:354-682
               
               
               Cow position:chr6:19427464-19427123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 166

               
               
               Conread position:356-641
               
               
               Cow position:chr6:69500332-69500044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):49, 132

               
               
               Conread position:356-681
               
               
               Cow position:chr6:65711832-65711501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:357-592
               
               
               Cow position:chr6:39994454-39994695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 52

               
               
               Conread position:357-656
               
               
               Cow position:chr6:61575617-61575303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 74

               
               
               Conread position:359-644
               
               
               Cow position:chr6:19329750-19330043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:359-676
               
               
               Cow position:chr6:24583219-24583556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 167

               
               
               Conread position:359-682
               
               
               Cow position:chr6:46571122-46570799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:359-684
               
               
               Cow position:chr6:2607620-2607285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:359-684
               
               
               Cow position:chr6:10332085-10332435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:360-576
               
               
               Cow position:chr6:15922995-15923215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:360-581
               
               
               Cow position:chr6:45160290-45160514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:360-603
               
               
               Cow position:chr6:1890840-1891088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:360-681
               
               
               Cow position:chr6:50445756-50446085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:360-682
               
               
               Cow position:chr6:10176292-10176625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:361-667
               
               
               Cow position:chr6:2013022-2012707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:361-673
               
               
               Cow position:chr6:52308344-52308016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:361-684
               
               
               Cow position:chr6:32210625-32210955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:361-684
               
               
               Cow position:chr6:33461088-33460763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:362-564
               
               
               Cow position:chr6:54864668-54864868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):37, 123

               
               
               Conread position:362-586
               
               
               Cow position:chr6:14201703-14201470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 59

               
               
               Conread position:362-684
               
               
               Cow position:chr6:12928121-12927794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:363-640
               
               
               Cow position:chr6:7103228-7103514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):46, 246

               
               
               Conread position:363-680
               
               
               Cow position:chr6:12623465-12623146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:365-670
               
               
               Cow position:chr6:32915925-32916235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:366-682
               
               
               Cow position:chr6:24327143-24327462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:368-628
               
               
               Cow position:chr6:50746983-50746704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):41, 163

               
               
               Conread position:368-676
               
               
               Cow position:chr6:10605684-10605363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:369-606
               
               
               Cow position:chr6:65676249-65676010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:369-668
               
               
               Cow position:chr6:58439956-58439668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):92, 54

               
               
               Conread position:371-682
               
               
               Cow position:chr6:39093729-39093435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:372-684
               
               
               Cow position:chr6:13605232-13605558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:373-658
               
               
               Cow position:chr6:55956119-55956407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 201

               
               
               Conread position:373-677
               
               
               Cow position:chr6:28322205-28322500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:373-680
               
               
               Cow position:chr6:875328-875649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):23, 309

               
               
               Conread position:373-682
               
               
               Cow position:chr6:54981100-54980775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:373-684
               
               
               Cow position:chr6:2185357-2185681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:373-684
               
               
               Cow position:chr6:21712852-21712527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:373-684
               
               
               Cow position:chr6:28173215-28172891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:373-684
               
               
               Cow position:chr6:31548435-31548758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:373-684
               
               
               Cow position:chr6:36532420-36532096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 170

               
               
               Conread position:373-684
               
               
               Cow position:chr6:41232605-41232283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 145

               
               
               Conread position:373-684
               
               
               Cow position:chr6:43188888-43188564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:373-684
               
               
               Cow position:chr6:43789229-43789549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 225

               
               
               Conread position:373-684
               
               
               Cow position:chr6:44578406-44578723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:373-684
               
               
               Cow position:chr6:51718701-51718376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:373-684
               
               
               Cow position:chr6:53052725-53052400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:373-684
               
               
               Cow position:chr6:58032116-58031794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:375-647
               
               
               Cow position:chr6:51877896-51877623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:375-684
               
               
               Cow position:chr6:28791826-28791505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 251

               
               
               Conread position:375-684
               
               
               Cow position:chr6:54218665-54218343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:376-682
               
               
               Cow position:chr6:65862678-65862359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:377-684
               
               
               Cow position:chr6:65910461-65910146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:379-533
               
               
               Cow position:chr6:18904356-18904514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:379-684
               
               
               Cow position:chr6:48421676-48421989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:380-682
               
               
               Cow position:chr6:50119802-50120113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:384-684
               
               
               Cow position:chr6:42267835-42267538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:385-645
               
               
               Cow position:chr6:26696630-26696897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:390-561
               
               
               Cow position:chr6:37603495-37603324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:390-581
               
               
               Cow position:chr6:51398771-51398578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:396-669
               
               
               Cow position:chr6:12934175-12934453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 74

               
               
               Conread position:396-680
               
               
               Cow position:chr6:24074597-24074891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:396-684
               
               
               Cow position:chr6:1278546-1278839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:396-684
               
               
               Cow position:chr6:6570086-6569792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:396-684
               
               
               Cow position:chr6:17111049-17111345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 149

               
               
               Conread position:396-684
               
               
               Cow position:chr6:17122503-17122210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:396-684
               
               
               Cow position:chr6:55904202-55903904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):45, 289

               
               
               Conread position:396-684
               
               
               Cow position:chr6:65873988-65874283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 279

               
               
               Conread position:397-558
               
               
               Cow position:chr6:88941-89104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:397-605
               
               
               Cow position:chr6:3719041-3719258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:398-682
               
               
               Cow position:chr6:2640152-2640448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):88, 53

               
               
               Conread position:399-583
               
               
               Cow position:chr6:65846485-65846672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:399-641
               
               
               Cow position:chr6:41265531-41265273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:399-670
               
               
               Cow position:chr6:32461607-32461881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):167, 50

               
               
               Conread position:400-558
               
               
               Cow position:chr6:59015598-59015757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:400-584
               
               
               Cow position:chr6:20605896-20605708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:400-586
               
               
               Cow position:chr6:389130-388943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):165, 84

               
               
               Conread position:400-595
               
               
               Cow position:chr6:61113717-61113513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:400-669
               
               
               Cow position:chr6:42931145-42931412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:400-680
               
               
               Cow position:chr6:5673197-5672905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):44, 240

               
               
               Conread position:400-682
               
               
               Cow position:chr6:54140770-54140492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:400-684
               
               
               Cow position:chr6:40320647-40320366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 139

               
               
               Conread position:401-546
               
               
               Cow position:chr6:25008669-25008530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:401-557
               
               
               Cow position:chr6:7989450-7989608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:401-563
               
               
               Cow position:chr6:46245358-46245524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:401-564
               
               
               Cow position:chr6:21110924-21110767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 58

               
               
               Conread position:401-581
               
               
               Cow position:chr6:59301861-59302047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:401-602
               
               
               Cow position:chr6:3929277-3929078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):163, 76

               
               
               Conread position:401-654
               
               
               Cow position:chr6:19508481-19508730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):158, 40

               
               
               Conread position:401-676
               
               
               Cow position:chr6:67214704-67214421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:401-680
               
               
               Cow position:chr6:1783818-1784090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:401-680
               
               
               Cow position:chr6:28477137-28476852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:401-681
               
               
               Cow position:chr6:10649065-10649344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:401-684
               
               
               Cow position:chr6:19737642-19737348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:401-684
               
               
               Cow position:chr6:41835415-41835121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:402-576
               
               
               Cow position:chr6:15266310-15266482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:402-577
               
               
               Cow position:chr6:7694390-7694572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:402-679
               
               
               Cow position:chr6:16706961-16706686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:403-595
               
               
               Cow position:chr6:20329982-20329784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:403-669
               
               
               Cow position:chr6:55607855-55608120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:404-636
               
               
               Cow position:chr6:21535012-21534778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:406-558
               
               
               Cow position:chr6:21812685-21812534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:410-684
               
               
               Cow position:chr6:19569832-19570114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:411-578
               
               
               Cow position:chr6:21184907-21184736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):96, 101

               
               
               Conread position:414-595
               
               
               Cow position:chr6:1002287-1002471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):135, 72

               
               
               Conread position:415-682
               
               
               Cow position:chr6:14063715-14063985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:416-684
               
               
               Cow position:chr6:19102808-19103086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:417-662
               
               
               Cow position:chr6:51296271-51296525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 207

               
               
               Conread position:417-681
               
               
               Cow position:chr6:10266038-10266311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:417-681
               
               
               Cow position:chr6:45665842-45666116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:417-684
               
               
               Cow position:chr6:17865484-17865211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:417-684
               
               
               Cow position:chr6:68830391-68830115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:419-628
               
               
               Cow position:chr6:57149010-57149228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:419-650
               
               
               Cow position:chr6:40264259-40264488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:419-654
               
               
               Cow position:chr6:32497893-32497652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 186

               
               
               Conread position:419-659
               
               
               Cow position:chr6:60018007-60017766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:419-682
               
               
               Cow position:chr6:3936482-3936220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:419-682
               
               
               Cow position:chr6:18080566-18080842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:419-682
               
               
               Cow position:chr6:28180028-28180291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):147, 57

               
               
               Conread position:419-684
               
               
               Cow position:chr6:48794058-48794334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):20, 252

               
               
               Conread position:420-585
               
               
               Cow position:chr6:22986049-22986212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:420-595
               
               
               Cow position:chr6:17067882-17068056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 12

               
               
               Conread position:420-676
               
               
               Cow position:chr6:25784252-25783992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):146, 64

               
               
               Conread position:420-681
               
               
               Cow position:chr6:28811052-28811321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:420-682
               
               
               Cow position:chr6:39998386-39998658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 125

               
               
               Conread position:420-684
               
               
               Cow position:chr6:11637811-11638069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:420-684
               
               
               Cow position:chr6:14690896-14690625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 199

               
               
               Conread position:420-684
               
               
               Cow position:chr6:54963436-54963699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:421-682
               
               
               Cow position:chr6:57474319-57474053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:421-684
               
               
               Cow position:chr6:55610297-55610564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:422-559
               
               
               Cow position:chr6:33917909-33918048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:422-642
               
               
               Cow position:chr6:642635-642864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:422-672
               
               
               Cow position:chr6:1104115-1104365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):146, 54

               
               
               Conread position:423-661
               
               
               Cow position:chr6:60467961-60467722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 63

               
               
               Conread position:423-680
               
               
               Cow position:chr6:41876117-41876376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:424-662
               
               
               Cow position:chr6:6124142-6123901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:426-670
               
               
               Cow position:chr6:38594570-38594815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):142, 50

               
               
               Conread position:426-680
               
               
               Cow position:chr6:33865158-33865415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:428-682
               
               
               Cow position:chr6:37331893-37331637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:428-684
               
               
               Cow position:chr6:33467032-33466775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 58

               
               
               Conread position:432-596
               
               
               Cow position:chr6:61978250-61978419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:432-666
               
               
               Cow position:chr6:27942965-27942729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:432-667
               
               
               Cow position:chr6:6167325-6167091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):134, 54

               
               
               Conread position:432-669
               
               
               Cow position:chr6:61067016-61066772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:432-671
               
               
               Cow position:chr6:37390948-37390698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:432-676
               
               
               Cow position:chr6:1733585-1733836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:432-679
               
               
               Cow position:chr6:41961036-41961289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:432-680
               
               
               Cow position:chr6:29284623-29284370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:432-680
               
               
               Cow position:chr6:46564840-46565089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):51, 151

               
               
               Conread position:432-682
               
               
               Cow position:chr6:14706487-14706739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:432-682
               
               
               Cow position:chr6:44906419-44906158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:432-684
               
               
               Cow position:chr6:33215441-33215706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:433-670
               
               
               Cow position:chr6:41557404-41557168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 142

               
               
               Conread position:433-679
               
               
               Cow position:chr6:12116123-12116374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:434-636
               
               
               Cow position:chr6:32024409-32024618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:434-661
               
               
               Cow position:chr6:6470845-6471078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 200

               
               
               Conread position:434-671
               
               
               Cow position:chr6:11705125-11704882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:434-682
               
               
               Cow position:chr6:26837459-26837711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 118

               
               
               Conread position:434-684
               
               
               Cow position:chr6:25374030-25374287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:435-624
               
               
               Cow position:chr6:16352396-16352588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:436-655
               
               
               Cow position:chr6:53401288-53401071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 50

               
               
               Conread position:436-662
               
               
               Cow position:chr6:5330072-5329848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):155, 12

               
               
               Conread position:436-680
               
               
               Cow position:chr6:59597586-59597332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:436-682
               
               
               Cow position:chr6:10682670-10682416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:437-564
               
               
               Cow position:chr6:2896676-2896549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:437-564
               
               
               Cow position:chr6:31260914-31260785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:437-564
               
               
               Cow position:chr6:66453723-66453599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:437-586
               
               
               Cow position:chr6:9026440-9026289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:437-586
               
               
               Cow position:chr6:16288500-16288648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:437-595
               
               
               Cow position:chr6:11830095-11829929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:437-620
               
               
               Cow position:chr6:35769559-35769747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:437-628
               
               
               Cow position:chr6:42961440-42961640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:437-648
               
               
               Cow position:chr6:34235511-34235728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:437-657
               
               
               Cow position:chr6:56925335-56925115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:437-661
               
               
               Cow position:chr6:16491995-16492220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:437-669
               
               
               Cow position:chr6:41152573-41152339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):49, 171

               
               
               Conread position:437-669
               
               
               Cow position:chr6:41823899-41824142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:437-670
               
               
               Cow position:chr6:1914544-1914310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:437-670
               
               
               Cow position:chr6:6188175-6187950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:437-671
               
               
               Cow position:chr6:20056555-20056316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:437-671
               
               
               Cow position:chr6:52121161-52120924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 73

               
               
               Conread position:437-675
               
               
               Cow position:chr6:26655183-26654950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):104, 97

               
               
               Conread position:437-676
               
               
               Cow position:chr6:12845233-12844989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 50

               
               
               Conread position:437-679
               
               
               Cow position:chr6:42693289-42693039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:437-680
               
               
               Cow position:chr6:45617513-45617764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):47, 245

               
               
               Conread position:437-680
               
               
               Cow position:chr6:52627532-52627290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:437-680
               
               
               Cow position:chr6:66363323-66363569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:437-681
               
               
               Cow position:chr6:16517935-16518182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:437-681
               
               
               Cow position:chr6:21311831-21312081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:437-681
               
               
               Cow position:chr6:48807073-48807314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):112, 42

               
               
               Conread position:437-682
               
               
               Cow position:chr6:1174576-1174828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):44, 147

               
               
               Conread position:437-682
               
               
               Cow position:chr6:7253499-7253765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:437-682
               
               
               Cow position:chr6:9788988-9788727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:437-682
               
               
               Cow position:chr6:21004591-21004329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:437-682
               
               
               Cow position:chr6:25358998-25358750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:437-682
               
               
               Cow position:chr6:36918252-36918494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 49

               
               
               Conread position:437-682
               
               
               Cow position:chr6:46667029-46666780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:437-682
               
               
               Cow position:chr6:48468728-48468475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:437-682
               
               
               Cow position:chr6:48655147-48655389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):131, 39

               
               
               Conread position:437-682
               
               
               Cow position:chr6:51071635-51071377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:437-682
               
               
               Cow position:chr6:52002291-52002043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:437-682
               
               
               Cow position:chr6:54357451-54357702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):120, 47

               
               
               Conread position:437-682
               
               
               Cow position:chr6:68297661-68297907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):57, 72

               
               
               Conread position:437-684
               
               
               Cow position:chr6:5500865-5501119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:437-684
               
               
               Cow position:chr6:43622091-43621837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:437-684
               
               
               Cow position:chr6:50625527-50625283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:438-634
               
               
               Cow position:chr6:13596966-13597171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-659
               
               
               Cow position:chr6:21300595-21300825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:438-665
               
               
               Cow position:chr6:68127380-68127144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:438-670
               
               
               Cow position:chr6:2874969-2875210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-678
               
               
               Cow position:chr6:62578859-62578610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-679
               
               
               Cow position:chr6:22042937-22043184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:438-679
               
               
               Cow position:chr6:37392791-37393037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:438-680
               
               
               Cow position:chr6:5866461-5866712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):128, 46

               
               
               Conread position:438-680
               
               
               Cow position:chr6:17871324-17871073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:438-680
               
               
               Cow position:chr6:38987753-38987998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):127, 49

               
               
               Conread position:438-680
               
               
               Cow position:chr6:48946449-48946690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):111, 10

               
               
               Conread position:438-682
               
               
               Cow position:chr6:9321360-9321103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-682
               
               
               Cow position:chr6:46391614-46391369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):115, 48

               
               
               Conread position:438-683
               
               
               Cow position:chr6:10459662-10459410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):45, 203

               
               
               Conread position:438-684
               
               
               Cow position:chr6:2074567-2074319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:438-684
               
               
               Cow position:chr6:9742241-9741986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:17364435-17364689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:18911658-18911913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:19843349-19843094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:25789661-25789916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:438-684
               
               
               Cow position:chr6:26925465-26925719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:438-684
               
               
               Cow position:chr6:27093512-27093766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:28000322-28000576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:28293749-28294004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:33147981-33147733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):128, 40

               
               
               Conread position:438-684
               
               
               Cow position:chr6:34111008-34111263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:37487376-37487631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):29, 243

               
               
               Conread position:438-684
               
               
               Cow position:chr6:39797653-39797908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:41470993-41470738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:43389991-43389736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:43955628-43955373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:45211220-45210965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:45900917-45901172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:46371520-46371773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):35, 222

               
               
               Conread position:438-684
               
               
               Cow position:chr6:46681730-46681480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 48

               
               
               Conread position:438-684
               
               
               Cow position:chr6:53448974-53448719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:57309297-57309042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:438-684
               
               
               Cow position:chr6:62330994-62331246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:438-684
               
               
               Cow position:chr6:65040907-65041161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:439-557
               
               
               Cow position:chr6:17245914-17246032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:439-557
               
               
               Cow position:chr6:20929782-20929902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:439-573
               
               
               Cow position:chr6:22502997-22503133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:439-624
               
               
               Cow position:chr6:53798959-53799149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 47

               
               
               Conread position:439-640
               
               
               Cow position:chr6:51387687-51387481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:439-659
               
               
               Cow position:chr6:6341077-6340856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:439-669
               
               
               Cow position:chr6:22804443-22804680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:439-670
               
               
               Cow position:chr6:6117629-6117871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:439-670
               
               
               Cow position:chr6:18977548-18977304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:439-670
               
               
               Cow position:chr6:23003491-23003716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:439-679
               
               
               Cow position:chr6:7951967-7952215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:439-679
               
               
               Cow position:chr6:23888739-23888982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:439-679
               
               
               Cow position:chr6:60781525-60781783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:439-679
               
               
               Cow position:chr6:65260785-65261029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:439-680
               
               
               Cow position:chr6:4681681-4681430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):45, 130

               
               
               Conread position:439-680
               
               
               Cow position:chr6:9375449-9375698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 190

               
               
               Conread position:439-684
               
               
               Cow position:chr6:45156030-45155790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:440-682
               
               
               Cow position:chr6:16397266-16397509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:441-646
               
               
               Cow position:chr6:15046175-15046385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):125, 45

               
               
               Conread position:441-646
               
               
               Cow position:chr6:28559337-28559128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:441-669
               
               
               Cow position:chr6:5275752-5275976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:441-680
               
               
               Cow position:chr6:2088581-2088336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 42

               
               
               Conread position:441-680
               
               
               Cow position:chr6:12516068-12515829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:441-684
               
               
               Cow position:chr6:7801446-7801692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 45

               
               
               Conread position:441-684
               
               
               Cow position:chr6:27152748-27152496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:441-684
               
               
               Cow position:chr6:41158248-41158500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:441-684
               
               
               Cow position:chr6:49627275-49627025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):115, 43

               
               
               Conread position:442-682
               
               
               Cow position:chr6:13693667-13693910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:446-684
               
               
               Cow position:chr6:65015972-65016218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:448-682
               
               
               Cow position:chr6:39137550-39137303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):39, 221

               
               
               Conread position:448-684
               
               
               Cow position:chr6:34924187-34924425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:449-654
               
               
               Cow position:chr6:12913571-12913785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:449-667
               
               
               Cow position:chr6:10426345-10426119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:449-671
               
               
               Cow position:chr6:28519612-28519384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:449-682
               
               
               Cow position:chr6:44016757-44016999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:449-682
               
               
               Cow position:chr6:68252693-68252457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:449-683
               
               
               Cow position:chr6:55265718-55265953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:449-684
               
               
               Cow position:chr6:43039974-43039733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:449-684
               
               
               Cow position:chr6:61051058-61051302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:450-576
               
               
               Cow position:chr6:397378-397250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:451-632
               
               
               Cow position:chr6:60274311-60274500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:451-677
               
               
               Cow position:chr6:37762301-37762067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:451-682
               
               
               Cow position:chr6:4164486-4164721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:452-670
               
               
               Cow position:chr6:27366228-27366008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:452-671
               
               
               Cow position:chr6:14931813-14932036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:452-682
               
               
               Cow position:chr6:8599697-8599461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):101, 27

               
               
               Conread position:452-682
               
               
               Cow position:chr6:60516643-60516401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:453-669
               
               
               Cow position:chr6:68272217-68272435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 175

               
               
               Conread position:453-684
               
               
               Cow position:chr6:17351942-17352182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:454-668
               
               
               Cow position:chr6:54447518-54447742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:454-680
               
               
               Cow position:chr6:31152005-31151773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:454-681
               
               
               Cow position:chr6:60673455-60673222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:454-683
               
               
               Cow position:chr6:40976223-40975985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):29, 230

               
               
               Conread position:454-684
               
               
               Cow position:chr6:27401174-27401411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:455-684
               
               
               Cow position:chr6:1406096-1406332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:455-684
               
               
               Cow position:chr6:3885447-3885686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:455-684
               
               
               Cow position:chr6:61548668-61548906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:457-652
               
               
               Cow position:chr6:23545559-23545763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:457-675
               
               
               Cow position:chr6:5851525-5851745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):109, 190

               
               
               Conread position:457-676
               
               
               Cow position:chr6:19327947-19328155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:457-682
               
               
               Cow position:chr6:56502212-56501985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:457-684
               
               
               Cow position:chr6:19719624-19719391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:457-684
               
               
               Cow position:chr6:51150951-51150717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:458-614
               
               
               Cow position:chr6:24374325-24374487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:458-665
               
               
               Cow position:chr6:24243335-24243119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:458-670
               
               
               Cow position:chr6:222524-222755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:458-680
               
               
               Cow position:chr6:66431739-66431520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:459-679
               
               
               Cow position:chr6:59849290-59849073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:459-682
               
               
               Cow position:chr6:47847796-47848027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:459-684
               
               
               Cow position:chr6:4389753-4389532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):25, 5

               
               
               Conread position:460-684
               
               
               Cow position:chr6:367122-366887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:462-670
               
               
               Cow position:chr6:54840997-54841218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:462-682
               
               
               Cow position:chr6:64427088-64426864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:462-684
               
               
               Cow position:chr6:14631493-14631260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:462-684
               
               
               Cow position:chr6:14890930-14891161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:462-684
               
               
               Cow position:chr6:68663007-68663240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:464-669
               
               
               Cow position:chr6:17050412-17050206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:465-679
               
               
               Cow position:chr6:28486616-28486835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:467-671
               
               
               Cow position:chr6:17456761-17456557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 103

               
               
               Conread position:467-676
               
               
               Cow position:chr6:18955137-18955354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:467-682
               
               
               Cow position:chr6:61180539-61180758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:467-682
               
               
               Cow position:chr6:61443206-61443427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:467-684
               
               
               Cow position:chr6:47773315-47773543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 217

               
               
               Conread position:468-666
               
               
               Cow position:chr6:6240067-6239856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:468-679
               
               
               Cow position:chr6:61162605-61162391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:468-680
               
               
               Cow position:chr6:20689432-20689651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:468-682
               
               
               Cow position:chr6:32854374-32854586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:468-682
               
               
               Cow position:chr6:33509473-33509254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:468-682
               
               
               Cow position:chr6:52215862-52216082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 7

               
               
               Conread position:468-682
               
               
               Cow position:chr6:52235353-52235573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 7

               
               
               Conread position:468-684
               
               
               Cow position:chr6:42416733-42416514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):98, 18

               
               
               Conread position:468-684
               
               
               Cow position:chr6:46585182-46584955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:469-632
               
               
               Cow position:chr6:3592014-3591849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:469-684
               
               
               Cow position:chr6:3271434-3271658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 213

               
               
               Conread position:469-684
               
               
               Cow position:chr6:11441928-11442151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:470-677
               
               
               Cow position:chr6:4155643-4155861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:470-682
               
               
               Cow position:chr6:64895973-64895760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:472-684
               
               
               Cow position:chr6:64096761-64096980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:472-684
               
               
               Cow position:chr6:65818194-65818410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:473-684
               
               
               Cow position:chr6:42106164-42106377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 67

               
               
               Conread position:476-680
               
               
               Cow position:chr6:30892635-30892844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:476-684
               
               
               Cow position:chr6:26666988-26667203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:477-681
               
               
               Cow position:chr6:19171170-19170959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):89, 201

               
               
               Conread position:477-684
               
               
               Cow position:chr6:11032308-11032522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:478-671
               
               
               Cow position:chr6:65891051-65891248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):80, 49

               
               
               Conread position:478-673
               
               
               Cow position:chr6:7174625-7174827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:478-682
               
               
               Cow position:chr6:181509-181719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:479-670
               
               
               Cow position:chr6:13345030-13345228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:480-667
               
               
               Cow position:chr6:16619045-16618856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 125

               
               
               Conread position:480-680
               
               
               Cow position:chr6:3562177-3561974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 64

               
               
               Conread position:481-679
               
               
               Cow position:chr6:35180454-35180660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 201

               
               
               Conread position:482-668
               
               
               Cow position:chr6:1866561-1866374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:482-676
               
               
               Cow position:chr6:32428125-32427930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:482-682
               
               
               Cow position:chr6:9732954-9733158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:482-682
               
               
               Cow position:chr6:50527535-50527332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:482-684
               
               
               Cow position:chr6:22507626-22507417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:483-669
               
               
               Cow position:chr6:35133045-35132852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:491-682
               
               
               Cow position:chr6:27815625-27815809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:492-628
               
               
               Cow position:chr6:27240111-27240251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:492-668
               
               
               Cow position:chr6:7009587-7009424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:492-684
               
               
               Cow position:chr6:58390004-58390203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:493-682
               
               
               Cow position:chr6:55205570-55205764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 51

               
               
               Conread position:496-682
               
               
               Cow position:chr6:42421127-42420939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:500-672
               
               
               Cow position:chr6:50527600-50527778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 176

               
               
               Conread position:500-684
               
               
               Cow position:chr6:21732247-21732439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:500-684
               
               
               Cow position:chr6:22921249-22921058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:501-682
               
               
               Cow position:chr6:62015506-62015319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):58, 179

               
               
               Conread position:501-684
               
               
               Cow position:chr6:56651659-56651847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):69, 49

               
               
               Conread position:504-681
               
               
               Cow position:chr6:20245942-20245758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:507-680
               
               
               Cow position:chr6:18904718-18904896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:507-682
               
               
               Cow position:chr6:58370432-58370246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:507-684
               
               
               Cow position:chr6:19712245-19712428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:508-648
               
               
               Cow position:chr6:38233837-38233690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:509-669
               
               
               Cow position:chr6:37598211-37598050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:510-671
               
               
               Cow position:chr6:62979394-62979558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:510-682
               
               
               Cow position:chr6:33949144-33949327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):50, 174

               
               
               Conread position:513-684
               
               
               Cow position:chr6:16230737-16230568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:514-680
               
               
               Cow position:chr6:55763235-55763065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:514-684
               
               
               Cow position:chr6:52209515-52209339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 165

               
               
               Conread position:517-649
               
               
               Cow position:chr6:21590562-21590424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:517-682
               
               
               Cow position:chr6:33451812-33451644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:530-684
               
               
               Cow position:chr6:34608702-34608864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:532-682
               
               
               Cow position:chr6:37148646-37148495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:533-684
               
               
               Cow position:chr6:19809505-19809350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:536-661
               
               
               Cow position:chr6:7010285-7010415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:536-682
               
               
               Cow position:chr6:28156291-28156444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:541-683
               
               
               Cow position:chr6:34405016-34405161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:546-681
               
               
               Cow position:chr6:62808975-62808833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:551-684
               
               
               Cow position:chr6:49445077-49444939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:551-684
               
               
               Cow position:chr6:51468271-51468136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:564-663
               
               
               Cow position:chr6:1499045-1498944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:564-668
               
               
               Cow position:chr6:50042900-50042793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-669
               
               
               Cow position:chr6:21302410-21302305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:564-682
               
               
               Cow position:chr6:31927841-31927723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:564-684
               
               
               Cow position:chr6:1228828-1228951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:11185368-11185245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:13597225-13597348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:15310069-15310192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:19707373-19707250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:26771177-26771301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:39080861-39080738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:44598107-44598230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:45747063-45747186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:50755817-50755694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:59076767-59076891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:564-684
               
               
               Cow position:chr6:63714346-63714468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:565-661
               
               
               Cow position:chr6:20329548-20329453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:565-681
               
               
               Cow position:chr6:65931164-65931045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:565-684
               
               
               Cow position:chr6:1834934-1834812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:565-684
               
               
               Cow position:chr6:3484463-3484585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:565-684
               
               
               Cow position:chr6:27477796-27477674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:565-684
               
               
               Cow position:chr6:28636235-28636357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:566-682
               
               
               Cow position:chr6:64314201-64314318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:567-682
               
               
               Cow position:chr6:21396281-21396395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:567-682
               
               
               Cow position:chr6:34031174-34031059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:567-682
               
               
               Cow position:chr6:40774581-40774697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:567-682
               
               
               Cow position:chr6:61136956-61136841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:567-684
               
               
               Cow position:chr6:20515516-20515396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:567-684
               
               
               Cow position:chr6:50572109-50571989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:567-684
               
               
               Cow position:chr6:52697557-52697437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:570-676
               
               
               Cow position:chr6:6460047-6459938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:572-684
               
               
               Cow position:chr6:28136674-28136559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:573-684
               
               
               Cow position:chr6:53553278-53553164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:575-676
               
               
               Cow position:chr6:9322920-9322819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:576-684
               
               
               Cow position:chr6:32300777-32300888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:579-682
               
               
               Cow position:chr6:16103471-16103575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:579-683
               
               
               Cow position:chr6:55143347-55143452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:579-684
               
               
               Cow position:chr6:47977859-47977751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:586-682
               
               
               Cow position:chr6:26914867-26914771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:588-682
               
               
               Cow position:chr6:44623004-44623101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:588-684
               
               
               Cow position:chr6:50114613-50114519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:590-682
               
               
               Cow position:chr6:2894993-2894901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:592-682
               
               
               Cow position:chr6:50983946-50983856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:592-683
               
               
               Cow position:chr6:240637-240546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:78
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:593-684
               
               
               Cow position:chr6:28100754-28100845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.
Conread position:	74-682
Cow position:	chr6:17090897-17090266 (view UCSC Genome Browser custom track)
Alignm length:	639
Alignm identity:	407
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	30, 119
Conread position:	83-682
Cow position:	chr6:18988490-18987892 (view UCSC Genome Browser custom track)
Alignm length:	625
Alignm identity:	420
Alignm E-value:	0
Alignm gaps (pig, cow):	34, 50
Conread position:	94-610
Cow position:	chr6:3952799-3952270 (view UCSC Genome Browser custom track)
Alignm length:	547
Alignm identity:	360
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	132, 15
Conread position:	99-682
Cow position:	chr6:16765116-16765719 (view UCSC Genome Browser custom track)
Alignm length:	615
Alignm identity:	399
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 85
Conread position:	100-635
Cow position:	chr6:22332115-22332678 (view UCSC Genome Browser custom track)
Alignm length:	574
Alignm identity:	370
Alignm E-value:	5e-32
Alignm gaps (pig, cow):	39, 12
Conread position:	101-670
Cow position:	chr6:64432214-64431627 (view UCSC Genome Browser custom track)
Alignm length:	594
Alignm identity:	394
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 84
Conread position:	102-684
Cow position:	chr6:8562992-8562387 (view UCSC Genome Browser custom track)
Alignm length:	614
Alignm identity:	415
Alignm E-value:	0
Alignm gaps (pig, cow):	29, 10
Conread position:	103-655
Cow position:	chr6:47520325-47519751 (view UCSC Genome Browser custom track)
Alignm length:	583
Alignm identity:	394
Alignm E-value:	0
Alignm gaps (pig, cow):	130, 14
Conread position:	105-669
Cow position:	chr6:16700525-16699948 (view UCSC Genome Browser custom track)
Alignm length:	592
Alignm identity:	402
Alignm E-value:	0
Alignm gaps (pig, cow):	111, 12
Conread position:	109-676
Cow position:	chr6:32122168-32121591 (view UCSC Genome Browser custom track)
Alignm length:	591
Alignm identity:	414
Alignm E-value:	0
Alignm gaps (pig, cow):	31, 76
Conread position:	110-682
Cow position:	chr6:17414184-17414780 (view UCSC Genome Browser custom track)
Alignm length:	606
Alignm identity:	423
Alignm E-value:	0
Alignm gaps (pig, cow):	121, 19
Conread position:	113-667
Cow position:	chr6:9008362-9008919 (view UCSC Genome Browser custom track)
Alignm length:	574
Alignm identity:	381
Alignm E-value:	0
Alignm gaps (pig, cow):	176, 16
Conread position:	116-619
Cow position:	chr6:61514929-61515461 (view UCSC Genome Browser custom track)
Alignm length:	544
Alignm identity:	362
Alignm E-value:	4.00001e-40
Alignm gaps (pig, cow):	10, 88
Conread position:	117-670
Cow position:	chr6:53932582-53933164 (view UCSC Genome Browser custom track)
Alignm length:	594
Alignm identity:	387
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	29, 62
Conread position:	121-547
Cow position:	chr6:50577774-50577335 (view UCSC Genome Browser custom track)
Alignm length:	445
Alignm identity:	296
Alignm E-value:	5.04467e-44
Alignm gaps (pig, cow):	25, 51
Conread position:	121-555
Cow position:	chr6:1704052-1703622 (view UCSC Genome Browser custom track)
Alignm length:	449
Alignm identity:	294
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	145, 44
Conread position:	121-564
Cow position:	chr6:7539831-7539371 (view UCSC Genome Browser custom track)
Alignm length:	465
Alignm identity:	302
Alignm E-value:	2e-36
Alignm gaps (pig, cow):	115, 61
Conread position:	123-470
Cow position:	chr6:59602956-59603317 (view UCSC Genome Browser custom track)
Alignm length:	365
Alignm identity:	245
Alignm E-value:	7e-36
Alignm gaps (pig, cow):	32, 67
Conread position:	124-511
Cow position:	chr6:9219517-9219124 (view UCSC Genome Browser custom track)
Alignm length:	401
Alignm identity:	254
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	98, 10
Conread position:	124-525
Cow position:	chr6:15243513-15243088 (view UCSC Genome Browser custom track)
Alignm length:	431
Alignm identity:	292
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	84, 25