Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010002D11.5 |
| Conread position: | 1-314 |
| Cow position: | chrX:17809838-17810155 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 281-491 |
| Cow position: | chrX:17814357-17814567 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 490-669 |
| Cow position: | chrX:17815588-17815767 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-759 |
| Cow position: | chrX:17816312-17816415 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 752-921 |
| Cow position: | chrX:17817830-17818000 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 923-1120 |
| Cow position: | chrX:17818488-17818685 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1118-1385 |
| Cow position: | chrX:17819034-17819301 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1710-2064 |
| Cow position: | chrX:17821970-17822328 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 284 |
| Conread position: | 1782-2070 |
| Cow position: | chrX:43070755-43071027 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 186, 52 |
| Conread position: | 1805-2017 |
| Cow position: | chrX:36837096-36837304 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 181, 30 |
| Conread position: | 1834-2009 |
| Cow position: | chrX:25788969-25789143 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 1835-2088 |
| Cow position: | chrX:13035579-13035827 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 1835-2092 |
| Cow position: | chrX:40552197-40552462 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 136, 51 |
| Conread position: | 1835-2094 |
| Cow position: | chrX:16954138-16953896 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 105, 51 |
| Conread position: | 1836-2009 |
| Cow position: | chrX:6857122-6857293 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 1839-2069 |
| Cow position: | chrX:37407930-37407711 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 1839-2094 |
| Cow position: | chrX:21622000-21621747 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 96, 47 |
| Conread position: | 1839-2094 |
| Cow position: | chrX:36067468-36067206 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 145, 35 |
| Conread position: | 1840-2090 |
| Cow position: | chrX:20875386-20875129 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 1843-2094 |
| Cow position: | chrX:4264881-4265134 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 1843-2094 |
| Cow position: | chrX:28809958-28809702 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 87, 43 |
| Conread position: | 1846-1989 |
| Cow position: | chrX:2398103-2398245 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 1846-2018 |
| Cow position: | chrX:11689818-11689988 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 1846-2094 |
| Cow position: | chrX:4435978-4436223 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 1846-2094 |
| Cow position: | chrX:10257148-10257404 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 31, 146 |
| Conread position: | 1846-2095 |
| Cow position: | chrX:41811437-41811186 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 92, 28 |
| Conread position: | 1860-2094 |
| Cow position: | chrX:2874177-2874405 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 74, 18 |
Show alignments to all cow chromosomes.