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Cow genome map

           
Conread name:
           
Ss1.1-Lng1-LNG010008H04.5
        

               
Conread position:
               
1-105
               

               
Cow position:
               
chr13:34299203-34299306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-106
               

               
Cow position:
               
chr13:49235367-49235471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-110
               

               
Cow position:
               
chr13:58742769-58742877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-111
               

               
Cow position:
               
chr13:21210293-21210185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-113
               

               
Cow position:
               
chr13:33256883-33256773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr13:38013037-38012925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr13:44323344-44323232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr13:53069867-53069752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr13:30694370-30694257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr13:17970636-17970750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr13:22116967-22116853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr13:24099622-24099737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr13:24156233-24156119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr13:12203043-12202928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-120
               

               
Cow position:
               
chr13:15622224-15622106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr13:9734310-9734189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr13:42201023-42200902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr13:50681396-50681516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr13:22025170-22025293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr13:22780354-22780231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr13:24119930-24119808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr13:26261386-26261509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr13:48165113-48165236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 34
               

               
Conread position:
               
1-130
               

               
Cow position:
               
chr13:46284232-46284361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr13:18002922-18003049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr13:4264368-4264232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr13:16025098-16024963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr13:19022612-19022481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr13:43974332-43974201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr13:4487479-4487609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr13:2558145-2558278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr13:2800510-2800643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr13:7465471-7465338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr13:14302361-14302228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr13:4262278-4262136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr13:17567624-17567759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr13:46606122-46606259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr13:9002113-9001975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr13:20597134-20597272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr13:6141356-6141498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr13:5608310-5608163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr13:3822463-3822313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr13:5621769-5621617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr13:23617776-23617931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr13:32980615-32980462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr13:58389494-58389334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr13:11148127-11147968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr13:12618726-12618904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr13:54864698-54864875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr13:11254029-11253850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr13:46428454-46428644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr13:17439208-17439393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
160, 33
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr13:21282111-21282292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
168, 33
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr13:38612836-38613024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr13:20088185-20088383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr13:34190848-34191055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr13:62169179-62169386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr13:1570830-1570619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr13:9900669-9900452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr13:56526957-56527170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr13:33160651-33160870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr13:42085172-42084956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr13:21135367-21135586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr13:32921412-32921186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr13:706559-706783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
175, 33
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr13:37558667-37558439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr13:46465585-46465367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr13:50188989-50188761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr13:20777219-20776989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr13:31607813-31607581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr13:25413043-25412812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr13:48628161-48628386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:2466069-2466302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:2955476-2955709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:4615632-4615865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:6716409-6716176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:7403031-7403264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:19565082-19564850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:23456728-23456961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
112, 33
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:34021735-34021502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:37122561-37122794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:45455718-45455951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:47023073-47022840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:47509767-47510000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:52019664-52019431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:52090708-52090942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:53208298-53208531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr13:55338366-55338599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr13:39827100-39826872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr13:32826042-32826286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr13:6919215-6918974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr13:40989443-40989193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 36
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr13:26073294-26073052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr13:19279696-19279425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr13:16953037-16952785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr13:22570911-22570641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr13:62517836-62518099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr13:3480112-3479846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr13:185869-185613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr13:12616120-12615869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr13:43384271-43384534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr13:51483837-51484102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
208, 38
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr13:26098507-26098245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr13:7010834-7010564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr13:14589887-14589621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr13:21988740-21989007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 36
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr13:31756992-31756728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr13:41608010-41608268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr13:10755279-10755013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr13:12233093-12233360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr13:24285917-24285657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
191, 33
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr13:24373770-24373496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr13:32961282-32961535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr13:38897891-38898153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr13:7366080-7366350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 36
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr13:21255990-21256256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr13:24695728-24695460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr13:25453535-25453263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 33
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr13:25882861-25883129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
211, 37
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr13:32166937-32167208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr13:1637038-1637311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
229, 37
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr13:6361274-6361549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr13:17612962-17612668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr13:26203833-26203558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr13:33500049-33499777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 33
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr13:265510-265228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 36
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr13:15591769-15592048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr13:16808208-16808498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr13:51856273-51856565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 33
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr13:30468492-30468201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr13:42215493-42215198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr13:58465545-58465250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
155, 36
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr13:15920835-15920544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 19
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:1590527-1590233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:6664501-6664206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 19
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:9537861-9538148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:11795075-11794777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:13904028-13904324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:14743316-14743601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:33332714-33332424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:34037931-34037636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr13:42277223-42277513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr13:20561464-20561163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
153, 36
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr13:43802871-43803170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr13:36673294-36673608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
218, 36
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr13:52433266-52433578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:681677-681998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:8690499-8690183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:12389753-12389441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:12991003-12990687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
222, 32
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:23444446-23444761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
195, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:24767777-24767439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:27475533-27475217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
155, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:28413662-28413343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:32524239-32523924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:47590778-47591090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 18
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:49977296-49977613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:50284568-50284253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:53156758-53156442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr13:57786358-57786674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr13:1844762-1845080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr13:52922467-52922145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr13:35541027-35541344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr13:43119673-43119356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr13:9302010-9302334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr13:18534069-18534393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr13:36396803-36397128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr13:45355642-45355323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 5
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr13:13126104-13125778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr13:18567150-18567476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 33
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr13:26382865-26383196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr13:27027413-27027730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 22
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:645550-645876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:1346539-1346212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:5498179-5497855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:8782734-8783059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
214, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:21402430-21402752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:24931195-24930868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
225, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:32081502-32081828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:43106890-43106564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:54975440-54975766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:60645961-60645636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr13:6606655-6606999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 37
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr13:46985381-46985037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr13:37516772-37517119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 36
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr13:59687504-59687862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
126, 36
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr13:47502351-47502707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr13:15162306-15162638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr13:42839174-42839530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 36
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr13:6945738-6945378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 33
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr13:60690354-60690720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr13:560762-560399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr13:562772-563137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr13:5175932-5175567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr13:13330172-13330529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr13:18121248-18120885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr13:54237702-54237359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 36
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr13:8172772-8172405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
136, 33
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr13:19426333-19426696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 33
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr13:15280914-15281290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr13:21235327-21235690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr13:33467046-33467420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr13:57027967-57028333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
147, 33
               

               
Conread position:
               
1-377
               

               
Cow position:
               
chr13:3970265-3970642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 39
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr13:36346353-36345954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
188, 38
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr13:20863658-20864038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 17
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr13:3701796-3701414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 22
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr13:21231138-21231528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr13:9803422-9803035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 33
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr13:22774935-22775326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr13:47313261-47312889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 36
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr13:24059966-24060365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr13:25248779-25249189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr13:30794185-30793788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr13:34052237-34052623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 37
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr13:18215795-18215407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr13:47215888-47216300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 36
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr13:53566949-53566549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr13:13220586-13221000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr13:15536858-15536445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr13:15538361-15537948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr13:21729479-21729064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr13:34212371-34212786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr13:2725181-2724761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr13:4736068-4736486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr13:4963852-4964271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr13:6869925-6870344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr13:7869938-7869510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr13:19102051-19101631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr13:19229566-19229143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr13:46055532-46055112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr13:27018979-27018550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 36
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr13:995704-996137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr13:30307040-30307473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr13:3356445-3356890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr13:4945025-4945470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr13:5041130-5041568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr13:8635945-8635500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr13:18329499-18329050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr13:34345928-34346370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr13:60879538-60879975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr13:32793714-32793264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr13:46182138-46181714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 40
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr13:25062780-25062334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 33
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr13:19639062-19639513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-463
               

               
Cow position:
               
chr13:34941292-34941741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 36
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr13:40657429-40657900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr13:43151472-43150994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr13:61954865-61955343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-481
               

               
Cow position:
               
chr13:1636365-1635898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 5
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr13:25531430-25531902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 10
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chr13:20649623-20650101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr13:57493819-57494307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 33
               

               
Conread position:
               
1-491
               

               
Cow position:
               
chr13:42214510-42214028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
1-491
               

               
Cow position:
               
chr13:46736582-46736095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
1-496
               

               
Cow position:
               
chr13:7663066-7663546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 22
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr13:10928628-10929114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 33
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr13:31814230-31813749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr13:28683719-28683231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 36
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr13:56686796-56686303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr13:43762536-43762037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
1-505
               

               
Cow position:
               
chr13:31511706-31512205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 32
               

               
Conread position:
               
1-505
               

               
Cow position:
               
chr13:32550367-32550869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 36
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr13:13766121-13765650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 36
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr13:32754876-32755380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
375, 37
               

               
Conread position:
               
1-517
               

               
Cow position:
               
chr13:40943608-40943095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chr13:50690027-50690548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 33
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chr13:51941094-51940583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 33
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr13:2414389-2413881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 33
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr13:17800439-17799925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr13:36771057-36771569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 33
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr13:6086536-6087043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 37
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr13:20683758-20684282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 36
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr13:38562309-38561792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 36
               

               
Conread position:
               
1-526
               

               
Cow position:
               
chr13:25434764-25435278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 33
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr13:56154798-56155309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chr13:12407919-12408470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr13:52057903-52057379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 36
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr13:20666023-20666567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-572
               

               
Cow position:
               
chr13:14716970-14717540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
1-574
               

               
Cow position:
               
chr13:20571091-20570529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
1-575
               

               
Cow position:
               
chr13:33352008-33352565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 37
               

               
Conread position:
               
1-584
               

               
Cow position:
               
chr13:971531-972106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
1-587
               

               
Cow position:
               
chr13:15446407-15445837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 38
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr13:12670092-12670665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr13:17820898-17821472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 5
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr13:25695405-25695980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 22
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr13:41807131-41806563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-591
               

               
Cow position:
               
chr13:9907101-9906512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 32
               

               
Conread position:
               
1-591
               

               
Cow position:
               
chr13:10988709-10989290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 36
               

               
Conread position:
               
1-591
               

               
Cow position:
               
chr13:20175104-20174521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 36
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr13:1170832-1170240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 36
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr13:20472633-20472055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr13:31808878-31808306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
1-595
               

               
Cow position:
               
chr13:44278717-44278126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 36
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr13:12875619-12876197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 201
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr13:17158499-17159103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr13:20879471-20880046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr13:22085394-22085953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr13:30504821-30504217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr13:47007374-47007935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
587, 37
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr13:59169921-59169328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
164, 34
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr13:21107495-21106920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr13:34261614-34261013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr13:34263017-34263595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 33
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr13:49805332-49804770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 14
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr13:15869482-15868885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr13:16248021-16247421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr13:52894492-52893925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 36
               

               
Conread position:
               
1-599
               

               
Cow position:
               
chr13:20820473-20821062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
1-599
               

               
Cow position:
               
chr13:23682385-23682983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 36
               

               
Conread position:
               
1-599
               

               
Cow position:
               
chr13:60447728-60448336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr13:609477-610089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr13:19882674-19883259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 33
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr13:34282045-34281453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
1-602
               

               
Cow position:
               
chr13:35525848-35526418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
1-605
               

               
Cow position:
               
chr13:33162844-33163458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-605
               

               
Cow position:
               
chr13:38283619-38284205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 33
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr13:1232016-1231407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr13:30799087-30798478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 36
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr13:45353395-45352792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
1-612
               

               
Cow position:
               
chr13:20893275-20893882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 36
               

               
Conread position:
               
1-613
               

               
Cow position:
               
chr13:13516914-13516292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-622
               

               
Cow position:
               
chr13:25927172-25926541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
1-793
               

               
Cow position:
               
chr13:30926126-30925334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
794
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
766, 33
               

               
Conread position:
               
2-115
               

               
Cow position:
               
chr13:18167380-18167268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-115
               

               
Cow position:
               
chr13:57444695-57444803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-120
               

               
Cow position:
               
chr13:35660149-35660032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr13:2114103-2113984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-123
               

               
Cow position:
               
chr13:606646-606766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-125
               

               
Cow position:
               
chr13:9570381-9570259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-151
               

               
Cow position:
               
chr13:6740134-6739983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
2-161
               

               
Cow position:
               
chr13:4420674-4420516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr13:47317929-47317739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr13:12940917-12940707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-285
               

               
Cow position:
               
chr13:12244653-12244933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr13:60436514-60436824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr13:32151925-32151621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 32
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr13:37947651-37947950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 32
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr13:31990507-31990832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
214, 35
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr13:34670211-34669891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
172, 11
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chr13:34555984-34556309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr13:37945856-37946231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 32
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr13:20440237-20440627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 32
               

               
Conread position:
               
2-478
               

               
Cow position:
               
chr13:54062991-54063461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 36
               

               
Conread position:
               
2-491
               

               
Cow position:
               
chr13:18835550-18835084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
479, 36
               

               
Conread position:
               
2-491
               

               
Cow position:
               
chr13:20563355-20562873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
2-497
               

               
Cow position:
               
chr13:661270-661764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
2-588
               

               
Cow position:
               
chr13:4553159-4552613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 37
               

               
Conread position:
               
2-588
               

               
Cow position:
               
chr13:46516426-46515846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 35
               

               
Conread position:
               
2-588
               

               
Cow position:
               
chr13:51528083-51528651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 32
               

               
Conread position:
               
2-594
               

               
Cow position:
               
chr13:12977923-12977359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 35
               

               
Conread position:
               
2-596
               

               
Cow position:
               
chr13:52284274-52283688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
2-607
               

               
Cow position:
               
chr13:12990209-12989630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 36
               

               
Conread position:
               
2-608
               

               
Cow position:
               
chr13:21708545-21707972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 36
               

               
Conread position:
               
2-615
               

               
Cow position:
               
chr13:12044977-12045587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 35
               

               
Conread position:
               
2-635
               

               
Cow position:
               
chr13:38329996-38329354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 32
               

               
Conread position:
               
3-122
               

               
Cow position:
               
chr13:60967159-60967035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
3-133
               

               
Cow position:
               
chr13:109858-109729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-141
               

               
Cow position:
               
chr13:5261987-5262122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
134, 35
               

               
Conread position:
               
3-153
               

               
Cow position:
               
chr13:13222685-13222536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-155
               

               
Cow position:
               
chr13:58313961-58314112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-191
               

               
Cow position:
               
chr13:34904875-34904694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chr13:22980628-22980441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr13:24702649-24702433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr13:30037483-30037711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr13:5910356-5910584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chr13:18908400-18908165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr13:6054739-6054485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
208, 34
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr13:9084171-9084423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
221, 31
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr13:32733563-32733303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
208, 34
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr13:20327300-20327569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr13:20537946-20537684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr13:6552837-6552544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr13:20527355-20527065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr13:1767132-1766815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr13:9350385-9350060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 34
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr13:35761206-35761524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
208, 10
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr13:14215367-14215047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
3-329
               

               
Cow position:
               
chr13:2186275-2186594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
232, 34
               

               
Conread position:
               
3-344
               

               
Cow position:
               
chr13:16270299-16269946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr13:34333589-34333920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
288, 35
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr13:32717510-32717857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr13:4024237-4023883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
160, 34
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr13:18351204-18350793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr13:12682179-12682583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chr13:53535941-53536380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
3-496
               

               
Cow position:
               
chr13:37483903-37484404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
3-582
               

               
Cow position:
               
chr13:6974528-6973955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
3-588
               

               
Cow position:
               
chr13:3162860-3162280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 34
               

               
Conread position:
               
3-588
               

               
Cow position:
               
chr13:61976602-61977171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 35
               

               
Conread position:
               
3-598
               

               
Cow position:
               
chr13:13261378-13260768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 31
               

               
Conread position:
               
3-617
               

               
Cow position:
               
chr13:13321139-13320558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 20
               

               
Conread position:
               
4-150
               

               
Cow position:
               
chr13:41412201-41412056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr13:1915627-1915412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr13:20243380-20243597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr13:9692910-9692681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
188, 13
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr13:20977247-20977026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr13:38727140-38727370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
185, 30
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr13:46996880-46996651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
103, 30
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr13:17873639-17873383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr13:2475803-2476053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
219, 33
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr13:21986935-21987189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
191, 34
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr13:20635135-20635394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr13:8899934-8899653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
115, 33
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr13:17270332-17270053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr13:43911299-43911571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
219, 30
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr13:11687923-11688202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr13:48629351-48629068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
4-301
               

               
Cow position:
               
chr13:62018728-62019029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
4-525
               

               
Cow position:
               
chr13:12546543-12547062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
4-589
               

               
Cow position:
               
chr13:16015177-16014589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
4-600
               

               
Cow position:
               
chr13:58320632-58320057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr13:18836110-18836322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr13:54071785-54071541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
202, 29
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr13:51440507-51440240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
174, 29
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chr13:14544472-14544162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 29
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr13:43629402-43629755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
5-401
               

               
Cow position:
               
chr13:1011694-1011302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
5-572
               

               
Cow position:
               
chr13:20605758-20606318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 32
               

               
Conread position:
               
5-596
               

               
Cow position:
               
chr13:17855733-17855146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 29
               

               
Conread position:
               
5-614
               

               
Cow position:
               
chr13:6616387-6617002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 32
               

               
Conread position:
               
6-154
               

               
Cow position:
               
chr13:8010219-8010366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-212
               

               
Cow position:
               
chr13:4477754-4477960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:2137592-2137367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:5028739-5028967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:6317125-6316901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:8301186-8301414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:14033946-14033718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:26161120-26161348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:28130395-28130167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:36701477-36701705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:40926974-40926746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:43628763-43628991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr13:60377030-60377276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
6-258
               

               
Cow position:
               
chr13:21670741-21670469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chr13:18054887-18055150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:3710210-3709940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:4665686-4665956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
217, 31
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:11486667-11486937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:13776592-13776862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:14551500-14551230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:16922508-16922778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:27416995-27416725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:38574512-38574242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:42249716-42249986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:44189948-44190218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:50189442-50189172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr13:52316852-52316582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-286
               

               
Cow position:
               
chr13:11571041-11570765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
205, 22
               

               
Conread position:
               
6-312
               

               
Cow position:
               
chr13:53531172-53531481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 31
               

               
Conread position:
               
6-316
               

               
Cow position:
               
chr13:3993484-3993173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
217, 31
               

               
Conread position:
               
6-327
               

               
Cow position:
               
chr13:670870-671193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
232, 28
               

               
Conread position:
               
6-340
               

               
Cow position:
               
chr13:3353631-3353971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-367
               

               
Cow position:
               
chr13:1458842-1458491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-374
               

               
Cow position:
               
chr13:3166003-3166372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr13:11266992-11267397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr13:57407329-57406924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
239, 28
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr13:43892452-43892856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr13:49446387-49446795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr13:52276054-52276462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr13:1568658-1568244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr13:3692957-3693372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr13:4035495-4035090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr13:13762322-13762737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr13:15657166-15657581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
217, 31
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr13:45934255-45934670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 31
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr13:51297857-51297442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 31
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr13:62027736-62028149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 28
               

               
Conread position:
               
6-500
               

               
Cow position:
               
chr13:23269853-23270334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 28
               

               
Conread position:
               
6-598
               

               
Cow position:
               
chr13:45022825-45023446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
6-607
               

               
Cow position:
               
chr13:47547931-47548516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 31
               

               
Conread position:
               
7-123
               

               
Cow position:
               
chr13:40722330-40722444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
7-125
               

               
Cow position:
               
chr13:37590428-37590312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
7-131
               

               
Cow position:
               
chr13:60486879-60487001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
7-135
               

               
Cow position:
               
chr13:5278614-5278741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-135
               

               
Cow position:
               
chr13:23669525-23669399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
7-157
               

               
Cow position:
               
chr13:48945056-48944904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
7-177
               

               
Cow position:
               
chr13:25892141-25892307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-183
               

               
Cow position:
               
chr13:8651897-8652075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr13:37978832-37979020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
105, 30
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr13:5671209-5671411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr13:24729307-24729095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr13:34882358-34882140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr13:48423189-48423436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr13:45636886-45637133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
7-263
               

               
Cow position:
               
chr13:5938865-5939122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
136, 27
               

               
Conread position:
               
7-267
               

               
Cow position:
               
chr13:19218501-19218242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
7-267
               

               
Cow position:
               
chr13:19289307-19289057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
204, 30
               

               
Conread position:
               
7-267
               

               
Cow position:
               
chr13:57769666-57769912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr13:18197331-18197070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
188, 22
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr13:11316189-11316464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr13:19263942-19263668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
146, 31
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr13:36264323-36264061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-276
               

               
Cow position:
               
chr13:52077465-52077744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
7-281
               

               
Cow position:
               
chr13:16128174-16127901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
215, 30
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr13:27985085-27985363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
7-314
               

               
Cow position:
               
chr13:11290457-11290765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
7-401
               

               
Cow position:
               
chr13:3003803-3003400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 32
               

               
Conread position:
               
7-409
               

               
Cow position:
               
chr13:6835451-6835831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
7-445
               

               
Cow position:
               
chr13:41253985-41253548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
7-448
               

               
Cow position:
               
chr13:55371802-55372241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 30
               

               
Conread position:
               
7-479
               

               
Cow position:
               
chr13:11834124-11834585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
107, 33
               
UCSC Genome Browser

               
Conread position:
               
7-487
               

               
Cow position:
               
chr13:15167175-15166703 (view  custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 27
               
UCSC Genome Browser

               
               
               
Conread position:
7-501

               
               
               
Cow position:
chr13:39952055-39952544 (view  custom track)

               
               
               
Alignm length:
506

               
               
               
Alignm identity:
340

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
210, 28
UCSC Genome Browser

               
               
               
Conread position:
7-506

               
               
               
Cow position:
chr13:32949647-32950127 (view  custom track)

               
               
               
Alignm length:
506

               
               
               
Alignm identity:
367

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
204, 30

               
               
               Conread position:7-511
               
               
               Cow position:chr13:52585666-52586178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 30

               
               
               Conread position:7-515
               
               
               Cow position:chr13:60974424-60973936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 31

               
               
               Conread position:7-516
               
               
               Cow position:chr13:1042597-1043107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 30

               
               
               Conread position:7-517
               
               
               Cow position:chr13:51901971-51901438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 30

               
               
               Conread position:7-520
               
               
               Cow position:chr13:40652292-40651785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 30

               
               
               Conread position:7-556
               
               
               Cow position:chr13:8202531-8203051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 30

               
               
               Conread position:7-558
               
               
               Cow position:chr13:42229679-42229118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:7-565
               
               
               Cow position:chr13:34375615-34375073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:7-587
               
               
               Cow position:chr13:311791-311220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:7-587
               
               
               Cow position:chr13:34728481-34729053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 30

               
               
               Conread position:7-588
               
               
               Cow position:chr13:9974707-9975281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:7-588
               
               
               Cow position:chr13:30651534-30650972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 30

               
               
               Conread position:7-588
               
               
               Cow position:chr13:33876022-33875459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:7-588
               
               
               Cow position:chr13:42860214-42860780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 30

               
               
               Conread position:7-608
               
               
               Cow position:chr13:21276215-21275622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:7-614
               
               
               Cow position:chr13:60508764-60509365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 30

               
               
               Conread position:8-122
               
               
               Cow position:chr13:11821674-11821561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-123
               
               
               Cow position:chr13:8195466-8195350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-231
               
               
               Cow position:chr13:21126718-21126939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:8-234
               
               
               Cow position:chr13:6343512-6343734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-237
               
               
               Cow position:chr13:50440197-50439969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:8-245
               
               
               Cow position:chr13:54286411-54286642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-255
               
               
               Cow position:chr13:62151745-62151989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-262
               
               
               Cow position:chr13:33049178-33048928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:8-262
               
               
               Cow position:chr13:33218552-33218306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:8-266
               
               
               Cow position:chr13:62273569-62273324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-269
               
               
               Cow position:chr13:15957165-15956898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:8-269
               
               
               Cow position:chr13:26079806-26079550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):147, 29

               
               
               Conread position:8-273
               
               
               Cow position:chr13:16092164-16091896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 26

               
               
               Conread position:8-297
               
               
               Cow position:chr13:9049215-9049499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-316
               
               
               Cow position:chr13:41360107-41359799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:8-316
               
               
               Cow position:chr13:42086502-42086193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):193, 26

               
               
               Conread position:8-325
               
               
               Cow position:chr13:11390889-11391204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:8-350
               
               
               Cow position:chr13:61170366-61170704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 29

               
               
               Conread position:8-398
               
               
               Cow position:chr13:19178632-19178248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-399
               
               
               Cow position:chr13:5752068-5752455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 29

               
               
               Conread position:8-423
               
               
               Cow position:chr13:49612459-49612044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:8-450
               
               
               Cow position:chr13:22790274-22789842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:8-474
               
               
               Cow position:chr13:3015812-3016275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 26

               
               
               Conread position:8-504
               
               
               Cow position:chr13:11820935-11820464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 29

               
               
               Conread position:8-521
               
               
               Cow position:chr13:60429724-60430227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 15

               
               
               Conread position:8-558
               
               
               Cow position:chr13:1155349-1155890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-577
               
               
               Cow position:chr13:44626737-44626164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 31

               
               
               Conread position:8-591
               
               
               Cow position:chr13:15872807-15872221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 29

               
               
               Conread position:8-608
               
               
               Cow position:chr13:58043987-58043388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:9-210
               
               
               Cow position:chr13:28653188-28652989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:9-239
               
               
               Cow position:chr13:32870320-32870098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:9-252
               
               
               Cow position:chr13:33620822-33621074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):157, 18

               
               
               Conread position:9-501
               
               
               Cow position:chr13:21175966-21176449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:9-526
               
               
               Cow position:chr13:46324432-46324942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:9-565
               
               
               Cow position:chr13:52637639-52637107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 26

               
               
               Conread position:10-142
               
               
               Cow position:chr13:33231875-33232009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:10-316
               
               
               Cow position:chr13:33522325-33522019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):213, 24

               
               
               Conread position:10-595
               
               
               Cow position:chr13:8609196-8609790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 24

               
               
               Conread position:12-220
               
               
               Cow position:chr13:28570191-28569980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 25

               
               
               Conread position:13-161
               
               
               Cow position:chr13:5229579-5229433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-181
               
               
               Cow position:chr13:5078632-5078799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:141
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-211
               
               
               Cow position:chr13:62039308-62039114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:13-227
               
               
               Cow position:chr13:3143591-3143381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-260
               
               
               Cow position:chr13:32803336-32803088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):198, 25

               
               
               Conread position:13-277
               
               
               Cow position:chr13:2789607-2789867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):210, 21

               
               
               Conread position:13-304
               
               
               Cow position:chr13:7504604-7504891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):198, 24

               
               
               Conread position:13-311
               
               
               Cow position:chr13:17787002-17787293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-327
               
               
               Cow position:chr13:50079105-50078793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):229, 24

               
               
               Conread position:13-606
               
               
               Cow position:chr13:20377989-20378548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 24

               
               
               Conread position:14-144
               
               
               Cow position:chr13:28550013-28550142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-186
               
               
               Cow position:chr13:38945738-38945568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:14-209
               
               
               Cow position:chr13:41901887-41901696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:14-237
               
               
               Cow position:chr13:53310362-53310582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:14-273
               
               
               Cow position:chr13:491734-491472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:14-282
               
               
               Cow position:chr13:46641487-46641755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):196, 23

               
               
               Conread position:14-289
               
               
               Cow position:chr13:52010234-52010503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-416
               
               
               Cow position:chr13:50618626-50618228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:14-588
               
               
               Cow position:chr13:152295-151757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:15-290
               
               
               Cow position:chr13:4441889-4441613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:15-312
               
               
               Cow position:chr13:6749224-6748933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:15-414
               
               
               Cow position:chr13:21155140-21155536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 19

               
               
               Conread position:15-513
               
               
               Cow position:chr13:61547652-61548125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:15-587
               
               
               Cow position:chr13:15958968-15958410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 22

               
               
               Conread position:15-596
               
               
               Cow position:chr13:2774469-2773894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:16-296
               
               
               Cow position:chr13:14816004-14815723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):195, 22

               
               
               Conread position:16-596
               
               
               Cow position:chr13:16292891-16292316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 24

               
               
               Conread position:16-608
               
               
               Cow position:chr13:37946628-37947181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:390
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):283, 21

               
               
               Conread position:17-222
               
               
               Cow position:chr13:58045503-58045701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:17-294
               
               
               Cow position:chr13:3319851-3320138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:17-464
               
               
               Cow position:chr13:17613695-17613248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 17

               
               
               Conread position:20-150
               
               
               Cow position:chr13:13803172-13803301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:20-155
               
               
               Cow position:chr13:54053269-54053403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:20-258
               
               
               Cow position:chr13:60026483-60026242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:20-302
               
               
               Cow position:chr13:15580198-15579913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):191, 17

               
               
               Conread position:20-325
               
               
               Cow position:chr13:42690354-42690062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:20-393
               
               
               Cow position:chr13:39950174-39950528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):268, 14

               
               
               Conread position:20-594
               
               
               Cow position:chr13:41918820-41919380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 17

               
               
               Conread position:20-599
               
               
               Cow position:chr13:15288586-15289144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:21-252
               
               
               Cow position:chr13:8960923-8960702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:21-305
               
               
               Cow position:chr13:15671382-15671665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):214, 16

               
               
               Conread position:23-222
               
               
               Cow position:chr13:49575981-49575785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:23-234
               
               
               Cow position:chr13:27241262-27241056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:23-296
               
               
               Cow position:chr13:3649146-3648873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 14

               
               
               Conread position:23-296
               
               
               Cow position:chr13:19262149-19261884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:23-316
               
               
               Cow position:chr13:33907106-33906803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:23-423
               
               
               Cow position:chr13:50192778-50192381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):200, 11

               
               
               Conread position:23-474
               
               
               Cow position:chr13:8838655-8839093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):424, 11

               
               
               Conread position:23-593
               
               
               Cow position:chr13:28139889-28139363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:387
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:23-599
               
               
               Cow position:chr13:8362403-8362973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 14

               
               
               Conread position:24-192
               
               
               Cow position:chr13:13283804-13283644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:24-241
               
               
               Cow position:chr13:33976013-33975805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:24-247
               
               
               Cow position:chr13:12480449-12480678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:24-268
               
               
               Cow position:chr13:8136227-8136476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:24-346
               
               
               Cow position:chr13:32017181-32017505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 13

               
               
               Conread position:25-222
               
               
               Cow position:chr13:48608256-48608454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):128, 12

               
               
               Conread position:25-234
               
               
               Cow position:chr13:60156573-60156365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:25-261
               
               
               Cow position:chr13:45132194-45131966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):166, 12

               
               
               Conread position:25-270
               
               
               Cow position:chr13:39487006-39487249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):170, 13

               
               
               Conread position:25-277
               
               
               Cow position:chr13:12912382-12912130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):186, 12

               
               
               Conread position:25-277
               
               
               Cow position:chr13:47570827-47571085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:25-409
               
               
               Cow position:chr13:16833749-16834112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:25-418
               
               
               Cow position:chr13:4038207-4037847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 10

               
               
               Conread position:25-596
               
               
               Cow position:chr13:12448647-12449202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:26-181
               
               
               Cow position:chr13:17597822-17597667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:26-193
               
               
               Cow position:chr13:26822470-26822303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:144
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-212
               
               
               Cow position:chr13:37636360-37636176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:26-221
               
               
               Cow position:chr13:49257653-49257846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:26-263
               
               
               Cow position:chr13:11223431-11223193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:26-263
               
               
               Cow position:chr13:44389947-44390183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):149, 8

               
               
               Conread position:26-270
               
               
               Cow position:chr13:1638546-1638781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):185, 12

               
               
               Conread position:26-271
               
               
               Cow position:chr13:47473273-47473027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 112

               
               
               Conread position:26-363
               
               
               Cow position:chr13:36937356-36937686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):213, 8

               
               
               Conread position:26-487
               
               
               Cow position:chr13:889844-890287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 8

               
               
               Conread position:26-494
               
               
               Cow position:chr13:6153439-6153906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 11

               
               
               Conread position:26-515
               
               
               Cow position:chr13:45604072-45604560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:27-184
               
               
               Cow position:chr13:31823004-31822848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):145, 10

               
               
               Conread position:27-269
               
               
               Cow position:chr13:179163-179401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:27-376
               
               
               Cow position:chr13:21836654-21836307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):196, 7

               
               
               Conread position:27-400
               
               
               Cow position:chr13:13266140-13265778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 10

               
               
               Conread position:28-269
               
               
               Cow position:chr13:19396688-19396447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 9

               
               
               Conread position:28-289
               
               
               Cow position:chr13:13344294-13344034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:28-394
               
               
               Cow position:chr13:21009013-21008645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 9

               
               
               Conread position:29-189
               
               
               Cow position:chr13:37747039-37747199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):99, 79

               
               
               Conread position:29-195
               
               
               Cow position:chr13:34671250-34671408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:29-261
               
               
               Cow position:chr13:35008642-35008873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):197, 5

               
               
               Conread position:29-263
               
               
               Cow position:chr13:22076413-22076186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:29-269
               
               
               Cow position:chr13:48627079-48626847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:29-296
               
               
               Cow position:chr13:28140203-28140471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):181, 8

               
               
               Conread position:29-401
               
               
               Cow position:chr13:33517571-33517954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:29-525
               
               
               Cow position:chr13:34508213-34507732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 8

               
               
               Conread position:30-222
               
               
               Cow position:chr13:47876146-47875963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:31-400
               
               
               Cow position:chr13:17886828-17886477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):180, 23

               
               
               Conread position:31-478
               
               
               Cow position:chr13:19138772-19138334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 6

               
               
               Conread position:31-497
               
               
               Cow position:chr13:37981416-37981870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:31-595
               
               
               Cow position:chr13:42114352-42113795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 6

               
               
               Conread position:32-393
               
               
               Cow position:chr13:37980316-37980666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 105

               
               
               Conread position:34-257
               
               
               Cow position:chr13:38725565-38725339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:36-155
               
               
               Cow position:chr13:3861784-3861664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:36-179
               
               
               Cow position:chr13:5447833-5447692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:128
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:36-212
               
               
               Cow position:chr13:33971602-33971779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:36-222
               
               
               Cow position:chr13:62135806-62135619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:36-238
               
               
               Cow position:chr13:6189300-6189501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 101

               
               
               Conread position:36-263
               
               
               Cow position:chr13:24547400-24547178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:36-266
               
               
               Cow position:chr13:41654396-41654630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):138, 62

               
               
               Conread position:36-267
               
               
               Cow position:chr13:52279248-52279019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):193, 49

               
               
               Conread position:36-270
               
               
               Cow position:chr13:18963319-18963082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):175, 46

               
               
               Conread position:36-273
               
               
               Cow position:chr13:3557234-3557473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:36-296
               
               
               Cow position:chr13:10754890-10754625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):126, 254

               
               
               Conread position:36-364
               
               
               Cow position:chr13:46458967-46458626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):82, 243

               
               
               Conread position:36-521
               
               
               Cow position:chr13:17622615-17622140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 157

               
               
               Conread position:36-584
               
               
               Cow position:chr13:11260581-11260068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:36-588
               
               
               Cow position:chr13:46525110-46525642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:37-212
               
               
               Cow position:chr13:20701721-20701899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:37-228
               
               
               Cow position:chr13:6839802-6839992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:37-273
               
               
               Cow position:chr13:12395354-12395114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:37-281
               
               
               Cow position:chr13:6498923-6498678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 116

               
               
               Conread position:37-318
               
               
               Cow position:chr13:6650931-6651208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):81, 126

               
               
               Conread position:37-338
               
               
               Cow position:chr13:38485148-38484864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:37-408
               
               
               Cow position:chr13:4208488-4208856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):174, 67

               
               
               Conread position:37-608
               
               
               Cow position:chr13:24754213-24753661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 11

               
               
               Conread position:38-229
               
               
               Cow position:chr13:11774414-11774601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:38-235
               
               
               Cow position:chr13:16114579-16114384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):181, 100

               
               
               Conread position:38-235
               
               
               Cow position:chr13:62480211-62480411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:38-491
               
               
               Cow position:chr13:43138900-43139334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 120

               
               
               Conread position:39-316
               
               
               Cow position:chr13:20834529-20834803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:39-413
               
               
               Cow position:chr13:19274926-19275305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):70, 247

               
               
               Conread position:39-423
               
               
               Cow position:chr13:37320590-37320973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):184, 260

               
               
               Conread position:40-158
               
               
               Cow position:chr13:38643799-38643915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-247
               
               
               Cow position:chr13:25332492-25332697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):108, 183

               
               
               Conread position:40-253
               
               
               Cow position:chr13:1000879-1000666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):161, 153

               
               
               Conread position:40-273
               
               
               Cow position:chr13:57482980-57483217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:40-313
               
               
               Cow position:chr13:35533149-35532889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:40-316
               
               
               Cow position:chr13:40813456-40813178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):183, 239

               
               
               Conread position:40-327
               
               
               Cow position:chr13:8473302-8473014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):205, 182

               
               
               Conread position:40-371
               
               
               Cow position:chr13:49283015-49283352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 130

               
               
               Conread position:40-416
               
               
               Cow position:chr13:18268165-18268540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):183, 239

               
               
               Conread position:41-221
               
               
               Cow position:chr13:3400647-3400827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-222
               
               
               Cow position:chr13:44399783-44399963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:41-448
               
               
               Cow position:chr13:21039277-21039675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 74

               
               
               Conread position:41-450
               
               
               Cow position:chr13:5867886-5868287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):169, 105

               
               
               Conread position:42-160
               
               
               Cow position:chr13:20944952-20945070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-237
               
               
               Cow position:chr13:28558559-28558366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:42-261
               
               
               Cow position:chr13:15208518-15208296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):184, 214

               
               
               Conread position:42-270
               
               
               Cow position:chr13:21524750-21524523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 114

               
               
               Conread position:42-316
               
               
               Cow position:chr13:3144670-3144394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):181, 237

               
               
               Conread position:42-372
               
               
               Cow position:chr13:15172084-15172413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 81

               
               
               Conread position:42-400
               
               
               Cow position:chr13:5091337-5091697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 45

               
               
               Conread position:42-595
               
               
               Cow position:chr13:2884375-2883836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 67

               
               
               Conread position:43-217
               
               
               Cow position:chr13:5031728-5031902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:43-260
               
               
               Cow position:chr13:31835942-31835733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 62

               
               
               Conread position:43-316
               
               
               Cow position:chr13:22195927-22195657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):196, 179

               
               
               Conread position:43-345
               
               
               Cow position:chr13:36948846-36949151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 226

               
               
               Conread position:43-596
               
               
               Cow position:chr13:40491567-40490996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:44-237
               
               
               Cow position:chr13:3994219-3994410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:44-600
               
               
               Cow position:chr13:26479894-26480430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 63

               
               
               Conread position:45-317
               
               
               Cow position:chr13:57323777-57323507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:46-234
               
               
               Cow position:chr13:36717008-36717195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):149, 37

               
               
               Conread position:47-267
               
               
               Cow position:chr13:39947882-39948099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:47-270
               
               
               Cow position:chr13:19119316-19119095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 7

               
               
               Conread position:48-237
               
               
               Cow position:chr13:36537644-36537830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:48-259
               
               
               Cow position:chr13:15460476-15460696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:48-581
               
               
               Cow position:chr13:27524943-27525465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:49-231
               
               
               Cow position:chr13:46421387-46421208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):177, 65

               
               
               Conread position:49-273
               
               
               Cow position:chr13:34932564-34932792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:49-582
               
               
               Cow position:chr13:17291816-17292335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 58

               
               
               Conread position:50-227
               
               
               Cow position:chr13:34673884-34673708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:50-268
               
               
               Cow position:chr13:29819921-29820144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:50-281
               
               
               Cow position:chr13:35853035-35853266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):161, 73

               
               
               Conread position:50-362
               
               
               Cow position:chr13:9125990-9125671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 136

               
               
               Conread position:50-414
               
               
               Cow position:chr13:20683263-20682907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 144

               
               
               Conread position:50-597
               
               
               Cow position:chr13:13089344-13088810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:50-600
               
               
               Cow position:chr13:44202306-44201787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 172

               
               
               Conread position:51-237
               
               
               Cow position:chr13:5119076-5119260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:52-258
               
               
               Cow position:chr13:42854690-42854898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:52-522
               
               
               Cow position:chr13:56148855-56148370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:52-522
               
               
               Cow position:chr13:56160112-56160597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:53-401
               
               
               Cow position:chr13:7415724-7416070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 142

               
               
               Conread position:53-513
               
               
               Cow position:chr13:47073826-47074286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):158, 226

               
               
               Conread position:53-521
               
               
               Cow position:chr13:37382125-37381651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 230

               
               
               Conread position:53-601
               
               
               Cow position:chr13:20270907-20271461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 48

               
               
               Conread position:54-233
               
               
               Cow position:chr13:25825046-25824869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:54-353
               
               
               Cow position:chr13:55843797-55843493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:54-510
               
               
               Cow position:chr13:34035681-34035228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 230

               
               
               Conread position:55-221
               
               
               Cow position:chr13:2804284-2804118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:55-232
               
               
               Cow position:chr13:40154560-40154728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:55-346
               
               
               Cow position:chr13:25261480-25261788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 207

               
               
               Conread position:57-263
               
               
               Cow position:chr13:8779702-8779498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):154, 9

               
               
               Conread position:57-354
               
               
               Cow position:chr13:52178408-52178121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):195, 164

               
               
               Conread position:57-525
               
               
               Cow position:chr13:20816620-20816169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 50

               
               
               Conread position:57-575
               
               
               Cow position:chr13:20813973-20814474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 50

               
               
               Conread position:59-237
               
               
               Cow position:chr13:39202995-39203171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:59-242
               
               
               Cow position:chr13:47599672-47599489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):158, 27

               
               
               Conread position:59-598
               
               
               Cow position:chr13:14976601-14976042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:362
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):142, 86

               
               
               Conread position:60-221
               
               
               Cow position:chr13:45515647-45515808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-317
               
               
               Cow position:chr13:51332162-51331907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):99, 163

               
               
               Conread position:60-584
               
               
               Cow position:chr13:17977641-17977133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:362
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:63-246
               
               
               Cow position:chr13:548822-548641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:63-284
               
               
               Cow position:chr13:56505341-56505562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):159, 178

               
               
               Conread position:63-326
               
               
               Cow position:chr13:14927541-14927279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 64

               
               
               Conread position:63-343
               
               
               Cow position:chr13:15740367-15740088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 44

               
               
               Conread position:63-471
               
               
               Cow position:chr13:25641808-25642218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):160, 84

               
               
               Conread position:63-593
               
               
               Cow position:chr13:32283423-32282908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 22

               
               
               Conread position:64-237
               
               
               Cow position:chr13:39912343-39912514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:64-269
               
               
               Cow position:chr13:48378269-48378479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:64-296
               
               
               Cow position:chr13:23460334-23460566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):140, 166

               
               
               Conread position:64-577
               
               
               Cow position:chr13:37521433-37521951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:65-350
               
               
               Cow position:chr13:54080502-54080795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:65-478
               
               
               Cow position:chr13:34113229-34113637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 37

               
               
               Conread position:65-588
               
               
               Cow position:chr13:18491901-18491394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:65-599
               
               
               Cow position:chr13:9142584-9142051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 82

               
               
               Conread position:66-222
               
               
               Cow position:chr13:45658474-45658629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:66-268
               
               
               Cow position:chr13:32657185-32656981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:66-486
               
               
               Cow position:chr13:43194473-43194055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:285
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):250, 51

               
               
               Conread position:66-550
               
               
               Cow position:chr13:47756675-47756184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 49

               
               
               Conread position:67-327
               
               
               Cow position:chr13:37698345-37698084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):156, 200

               
               
               Conread position:67-593
               
               
               Cow position:chr13:15234206-15233728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:352
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:67-608
               
               
               Cow position:chr13:58525212-58524710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:361
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):258, 68

               
               
               Conread position:68-268
               
               
               Cow position:chr13:45496964-45497160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:68-325
               
               
               Cow position:chr13:23199507-23199248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):129, 211

               
               
               Conread position:69-506
               
               
               Cow position:chr13:25537939-25537489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 104

               
               
               Conread position:69-588
               
               
               Cow position:chr13:25817811-25817316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 151

               
               
               Conread position:72-237
               
               
               Cow position:chr13:711526-711363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):75, 57

               
               
               Conread position:72-251
               
               
               Cow position:chr13:59916918-59916733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:72-296
               
               
               Cow position:chr13:21576099-21575869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 73

               
               
               Conread position:73-273
               
               
               Cow position:chr13:17807115-17806911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:73-338
               
               
               Cow position:chr13:17994227-17993958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:74-237
               
               
               Cow position:chr13:7835109-7834948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:74-291
               
               
               Cow position:chr13:30673851-30674069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:74-474
               
               
               Cow position:chr13:3716281-3715881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):15, 197

               
               
               Conread position:74-516
               
               
               Cow position:chr13:9265519-9265971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 208

               
               
               Conread position:74-517
               
               
               Cow position:chr13:51821595-51822020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:74-598
               
               
               Cow position:chr13:38872682-38873180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:360
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:75-269
               
               
               Cow position:chr13:12521492-12521680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):134, 72

               
               
               Conread position:76-237
               
               
               Cow position:chr13:32255835-32255993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:76-491
               
               
               Cow position:chr13:18989996-18989603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 174

               
               
               Conread position:77-310
               
               
               Cow position:chr13:7804268-7804036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:77-374
               
               
               Cow position:chr13:8824556-8824257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):48, 147

               
               
               Conread position:77-377
               
               
               Cow position:chr13:33191206-33190903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):134, 202

               
               
               Conread position:77-588
               
               
               Cow position:chr13:42200910-42200407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:79-386
               
               
               Cow position:chr13:6759502-6759810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):132, 96

               
               
               Conread position:80-234
               
               
               Cow position:chr13:15276426-15276274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:80-255
               
               
               Cow position:chr13:19512304-19512481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:80-316
               
               
               Cow position:chr13:10658581-10658343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 212

               
               
               Conread position:80-403
               
               
               Cow position:chr13:21194234-21194539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):219, 27

               
               
               Conread position:80-598
               
               
               Cow position:chr13:12574921-12574405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 185

               
               
               Conread position:81-270
               
               
               Cow position:chr13:26983903-26983715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:82-414
               
               
               Cow position:chr13:1780120-1779787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:83-304
               
               
               Cow position:chr13:7493395-7493616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):128, 158

               
               
               Conread position:83-423
               
               
               Cow position:chr13:32559159-32558820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):140, 196

               
               
               Conread position:84-478
               
               
               Cow position:chr13:9119829-9120228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):149, 139

               
               
               Conread position:84-483
               
               
               Cow position:chr13:23266012-23265621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):212, 136

               
               
               Conread position:86-513
               
               
               Cow position:chr13:17568405-17568830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):133, 23

               
               
               Conread position:86-588
               
               
               Cow position:chr13:60599657-60600149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 152

               
               
               Conread position:87-270
               
               
               Cow position:chr13:8265754-8265567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:87-270
               
               
               Cow position:chr13:37497479-37497655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:87-296
               
               
               Cow position:chr13:12605974-12606178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 50

               
               
               Conread position:87-391
               
               
               Cow position:chr13:13116373-13116077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):146, 20

               
               
               Conread position:87-595
               
               
               Cow position:chr13:18852352-18851868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 20

               
               
               Conread position:88-327
               
               
               Cow position:chr13:38089774-38090012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):135, 189

               
               
               Conread position:88-423
               
               
               Cow position:chr13:12780774-12780440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):135, 191

               
               
               Conread position:88-595
               
               
               Cow position:chr13:61047485-61046985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:89-263
               
               
               Cow position:chr13:18475430-18475605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:89-316
               
               
               Cow position:chr13:7257679-7257450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 153

               
               
               Conread position:89-316
               
               
               Cow position:chr13:51484474-51484703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):127, 190

               
               
               Conread position:90-292
               
               
               Cow position:chr13:27017112-27017305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:90-423
               
               
               Cow position:chr13:16007501-16007169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):133, 189

               
               
               Conread position:90-598
               
               
               Cow position:chr13:33256773-33256272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 175

               
               
               Conread position:91-432
               
               
               Cow position:chr13:13306382-13306032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 195

               
               
               Conread position:93-232
               
               
               Cow position:chr13:43166800-43166938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:93-237
               
               
               Cow position:chr13:39293887-39294029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:93-339
               
               
               Cow position:chr13:24539766-24539519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:93-418
               
               
               Cow position:chr13:4531220-4530896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 206

               
               
               Conread position:93-511
               
               
               Cow position:chr13:45726153-45725746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 54

               
               
               Conread position:93-593
               
               
               Cow position:chr13:6079145-6079621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 172

               
               
               Conread position:94-316
               
               
               Cow position:chr13:7749698-7749474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):129, 173

               
               
               Conread position:94-472
               
               
               Cow position:chr13:52097896-52097532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:94-516
               
               
               Cow position:chr13:60967037-60966624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 117

               
               
               Conread position:95-444
               
               
               Cow position:chr13:23099983-23099634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):141, 174

               
               
               Conread position:95-594
               
               
               Cow position:chr13:19023567-19024072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 193

               
               
               Conread position:96-234
               
               
               Cow position:chr13:61253432-61253297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:96-416
               
               
               Cow position:chr13:1341086-1341405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 183

               
               
               Conread position:97-473
               
               
               Cow position:chr13:18244125-18243761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 17

               
               
               Conread position:98-514
               
               
               Cow position:chr13:38277868-38278290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 141

               
               
               Conread position:99-263
               
               
               Cow position:chr13:46329196-46329363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:139
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:99-267
               
               
               Cow position:chr13:13988365-13988187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:100-263
               
               
               Cow position:chr13:14576933-14576774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:141
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:100-400
               
               
               Cow position:chr13:55295359-55295651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 47

               
               
               Conread position:101-205
               
               
               Cow position:chr13:4514698-4514594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:101-341
               
               
               Cow position:chr13:46311768-46311998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:101-423
               
               
               Cow position:chr13:2217723-2218041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 175

               
               
               Conread position:101-474
               
               
               Cow position:chr13:36352704-36353059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:101-587
               
               
               Cow position:chr13:15041206-15041687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 177

               
               
               Conread position:101-596
               
               
               Cow position:chr13:18166996-18166511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 132

               
               
               Conread position:101-619
               
               
               Cow position:chr13:54702456-54701936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 65

               
               
               Conread position:103-446
               
               
               Cow position:chr13:24376752-24376419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 5

               
               
               Conread position:104-269
               
               
               Cow position:chr13:25656322-25656491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:105-269
               
               
               Cow position:chr13:24690207-24690038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:105-280
               
               
               Cow position:chr13:1839642-1839468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):165, 48

               
               
               Conread position:105-574
               
               
               Cow position:chr13:24155804-24155311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:105-582
               
               
               Cow position:chr13:19393547-19393089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 23

               
               
               Conread position:105-593
               
               
               Cow position:chr13:5169398-5168914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:317
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):209, 9

               
               
               Conread position:105-598
               
               
               Cow position:chr13:17021458-17021949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 169

               
               
               Conread position:105-598
               
               
               Cow position:chr13:22115967-22115452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:106-271
               
               
               Cow position:chr13:62601502-62601341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:106-344
               
               
               Cow position:chr13:54381674-54381914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 41

               
               
               Conread position:106-591
               
               
               Cow position:chr13:21287829-21288301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 134

               
               
               Conread position:107-232
               
               
               Cow position:chr13:6969300-6969422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:107-258
               
               
               Cow position:chr13:22732119-22732269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:107-393
               
               
               Cow position:chr13:4866720-4866992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:107-397
               
               
               Cow position:chr13:39948159-39948442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):220, 115

               
               
               Conread position:107-579
               
               
               Cow position:chr13:26847565-26848035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:307
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):160, 65

               
               
               Conread position:107-597
               
               
               Cow position:chr13:57002999-57002500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 179

               
               
               Conread position:107-598
               
               
               Cow position:chr13:37617583-37617089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:108-322
               
               
               Cow position:chr13:26423775-26423991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 171

               
               
               Conread position:109-221
               
               
               Cow position:chr13:25227925-25228038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:109-317
               
               
               Cow position:chr13:46298379-46298594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 204

               
               
               Conread position:109-501
               
               
               Cow position:chr13:11061243-11060857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:109-600
               
               
               Cow position:chr13:17970776-17971269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 39

               
               
               Conread position:110-270
               
               
               Cow position:chr13:32773620-32773462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:111-363
               
               
               Cow position:chr13:20530885-20531143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:113-497
               
               
               Cow position:chr13:6621344-6621717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 154

               
               
               Conread position:113-586
               
               
               Cow position:chr13:20784842-20784383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 152

               
               
               Conread position:113-596
               
               
               Cow position:chr13:8195335-8194875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 12

               
               
               Conread position:114-268
               
               
               Cow position:chr13:47675158-47675310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:114-316
               
               
               Cow position:chr13:21210115-21209914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:114-325
               
               
               Cow position:chr13:2113938-2113726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 135

               
               
               Conread position:114-346
               
               
               Cow position:chr13:60330004-60329774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:114-401
               
               
               Cow position:chr13:13563699-13563978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):183, 33

               
               
               Conread position:114-428
               
               
               Cow position:chr13:5658478-5658782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):212, 33

               
               
               Conread position:114-503
               
               
               Cow position:chr13:48037873-48037491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 97

               
               
               Conread position:114-507
               
               
               Cow position:chr13:54095057-54094673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):213, 33

               
               
               Conread position:114-519
               
               
               Cow position:chr13:20839822-20839418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):25, 157

               
               
               Conread position:114-558
               
               
               Cow position:chr13:15349017-15349438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):335, 83

               
               
               Conread position:114-588
               
               
               Cow position:chr13:26261541-26262005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 164

               
               
               Conread position:115-263
               
               
               Cow position:chr13:53012133-53012282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:115-268
               
               
               Cow position:chr13:10859710-10859863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:115-274
               
               
               Cow position:chr13:29671189-29671346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:115-278
               
               
               Cow position:chr13:33168528-33168683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:115-286
               
               
               Cow position:chr13:57745848-57746017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:115-297
               
               
               Cow position:chr13:9107827-9107653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):157, 31

               
               
               Conread position:115-325
               
               
               Cow position:chr13:19556004-19555803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:115-345
               
               
               Cow position:chr13:48251740-48251964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):210, 122

               
               
               Conread position:115-350
               
               
               Cow position:chr13:9246966-9246739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):172, 107

               
               
               Conread position:115-354
               
               
               Cow position:chr13:22780197-22779973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):211, 32

               
               
               Conread position:115-383
               
               
               Cow position:chr13:7262645-7262377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:115-386
               
               
               Cow position:chr13:29631104-29630840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 45

               
               
               Conread position:115-418
               
               
               Cow position:chr13:30693953-30693668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):107, 117

               
               
               Conread position:115-465
               
               
               Cow position:chr13:33631372-33631036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):121, 127

               
               
               Conread position:115-474
               
               
               Cow position:chr13:34995074-34995431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:115-485
               
               
               Cow position:chr13:16343938-16343581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:115-506
               
               
               Cow position:chr13:5713546-5713180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):210, 107

               
               
               Conread position:115-515
               
               
               Cow position:chr13:52285067-52284673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:115-516
               
               
               Cow position:chr13:9665327-9664916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):78, 250

               
               
               Conread position:115-520
               
               
               Cow position:chr13:12926042-12925628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):103, 32

               
               
               Conread position:115-521
               
               
               Cow position:chr13:23166845-23167253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 32

               
               
               Conread position:115-556
               
               
               Cow position:chr13:23479281-23478847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 137

               
               
               Conread position:115-582
               
               
               Cow position:chr13:4664609-4665057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):38, 133

               
               
               Conread position:115-588
               
               
               Cow position:chr13:14063276-14063734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 39

               
               
               Conread position:115-598
               
               
               Cow position:chr13:43594864-43595331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 32

               
               
               Conread position:115-608
               
               
               Cow position:chr13:3315421-3315920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:116-375
               
               
               Cow position:chr13:24280499-24280236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 155

               
               
               Conread position:116-588
               
               
               Cow position:chr13:57475169-57475630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:117-297
               
               
               Cow position:chr13:52379507-52379691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:117-319
               
               
               Cow position:chr13:58719273-58719468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):148, 120

               
               
               Conread position:117-321
               
               
               Cow position:chr13:16155468-16155674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:117-354
               
               
               Cow position:chr13:34299394-34299615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):162, 30

               
               
               Conread position:117-376
               
               
               Cow position:chr13:14227177-14226922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):200, 119

               
               
               Conread position:117-413
               
               
               Cow position:chr13:52879660-52879373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:117-503
               
               
               Cow position:chr13:40722460-40722839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 56

               
               
               Conread position:117-512
               
               
               Cow position:chr13:43184621-43185021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:117-596
               
               
               Cow position:chr13:23960556-23961029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 161

               
               
               Conread position:117-598
               
               
               Cow position:chr13:35660003-35659532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 148

               
               
               Conread position:117-611
               
               
               Cow position:chr13:37985501-37985985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:118-325
               
               
               Cow position:chr13:22025449-22025664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 158

               
               
               Conread position:118-379
               
               
               Cow position:chr13:38012610-38012346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 164

               
               
               Conread position:118-450
               
               
               Cow position:chr13:61166208-61166528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:118-496
               
               
               Cow position:chr13:12614509-12614128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 163

               
               
               Conread position:118-588
               
               
               Cow position:chr13:24715486-24715036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:118-598
               
               
               Cow position:chr13:19364493-19364021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 144

               
               
               Conread position:119-241
               
               
               Cow position:chr13:57227956-57227830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:119-270
               
               
               Cow position:chr13:60221186-60221339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:119-286
               
               
               Cow position:chr13:26758036-26757863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:119-472
               
               
               Cow position:chr13:49848165-49847823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):253, 28

               
               
               Conread position:119-479
               
               
               Cow position:chr13:8201237-8201590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:119-497
               
               
               Cow position:chr13:15884766-15885146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 28

               
               
               Conread position:119-502
               
               
               Cow position:chr13:13501374-13501748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:119-510
               
               
               Cow position:chr13:11460871-11460495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:119-575
               
               
               Cow position:chr13:15974858-15974418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 102

               
               
               Conread position:119-596
               
               
               Cow position:chr13:37069597-37069123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 142

               
               
               Conread position:120-322
               
               
               Cow position:chr13:37521133-37521332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:120-365
               
               
               Cow position:chr13:8607273-8607515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:120-519
               
               
               Cow position:chr13:11096415-11096034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):160, 16

               
               
               Conread position:121-521
               
               
               Cow position:chr13:23856461-23856061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:121-588
               
               
               Cow position:chr13:44323149-44322679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:122-269
               
               
               Cow position:chr13:32316915-32316769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:122-273
               
               
               Cow position:chr13:17178501-17178350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:122-310
               
               
               Cow position:chr13:29122597-29122782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):158, 94

               
               
               Conread position:122-325
               
               
               Cow position:chr13:26697859-26698061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:122-400
               
               
               Cow position:chr13:47863454-47863731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 145

               
               
               Conread position:122-474
               
               
               Cow position:chr13:8524376-8524720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:122-578
               
               
               Cow position:chr13:15622052-15621606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 60

               
               
               Conread position:122-588
               
               
               Cow position:chr13:12283080-12282624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:312
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):89, 25

               
               
               Conread position:123-349
               
               
               Cow position:chr13:21904903-21904681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):151, 19

               
               
               Conread position:123-393
               
               
               Cow position:chr13:60487212-60487487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 146

               
               
               Conread position:123-400
               
               
               Cow position:chr13:16024832-16024561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:123-478
               
               
               Cow position:chr13:50610324-50610669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:123-570
               
               
               Cow position:chr13:54418476-54418025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 156

               
               
               Conread position:123-577
               
               
               Cow position:chr13:11808786-11808379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):204, 39

               
               
               Conread position:123-588
               
               
               Cow position:chr13:11821384-11820947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):202, 11

               
               
               Conread position:123-588
               
               
               Cow position:chr13:20880682-20881134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:123-598
               
               
               Cow position:chr13:21241848-21242300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 143

               
               
               Conread position:123-600
               
               
               Cow position:chr13:5278944-5279434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:123-605
               
               
               Cow position:chr13:9587340-9587812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:123-608
               
               
               Cow position:chr13:13474785-13475264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:301
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):115, 98

               
               
               Conread position:124-357
               
               
               Cow position:chr13:24776534-24776292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:124-517
               
               
               Cow position:chr13:20705960-20706351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 29

               
               
               Conread position:124-598
               
               
               Cow position:chr13:55673962-55674433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 145

               
               
               Conread position:125-256
               
               
               Cow position:chr13:11202495-11202359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:125-285
               
               
               Cow position:chr13:46636889-46637049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:125-314
               
               
               Cow position:chr13:15624854-15624663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 154

               
               
               Conread position:125-358
               
               
               Cow position:chr13:22886750-22886987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 165

               
               
               Conread position:125-474
               
               
               Cow position:chr13:10932794-10932449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 165

               
               
               Conread position:125-493
               
               
               Cow position:chr13:1959251-1958886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:125-517
               
               
               Cow position:chr13:7076498-7076111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:125-522
               
               
               Cow position:chr13:547727-547344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:125-582
               
               
               Cow position:chr13:17114138-17114588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 57

               
               
               Conread position:126-377
               
               
               Cow position:chr13:30510302-30510050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 145

               
               
               Conread position:126-400
               
               
               Cow position:chr13:2462991-2463263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):141, 6

               
               
               Conread position:126-599
               
               
               Cow position:chr13:10924665-10925147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:127-314
               
               
               Cow position:chr13:54331259-54331071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 142

               
               
               Conread position:127-358
               
               
               Cow position:chr13:2339669-2339443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):200, 20

               
               
               Conread position:127-401
               
               
               Cow position:chr13:20041717-20041999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:127-474
               
               
               Cow position:chr13:20466055-20466387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):154, 27

               
               
               Conread position:127-479
               
               
               Cow position:chr13:13176889-13176543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):197, 73

               
               
               Conread position:127-506
               
               
               Cow position:chr13:50681569-50681946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):84, 120

               
               
               Conread position:128-235
               
               
               Cow position:chr13:55947643-55947749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:129-227
               
               
               Cow position:chr13:20867993-20868089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:129-339
               
               
               Cow position:chr13:46501542-46501329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):114, 160

               
               
               Conread position:129-490
               
               
               Cow position:chr13:6060770-6061127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:129-603
               
               
               Cow position:chr13:24586285-24585822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 142

               
               
               Conread position:130-391
               
               
               Cow position:chr13:43812319-43812067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:130-391
               
               
               Cow position:chr13:43839310-43839562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:130-550
               
               
               Cow position:chr13:25547356-25547761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 91

               
               
               Conread position:131-351
               
               
               Cow position:chr13:48944896-48944686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):196, 6

               
               
               Conread position:131-374
               
               
               Cow position:chr13:17816007-17815759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 137

               
               
               Conread position:131-516
               
               
               Cow position:chr13:55315953-55316342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 134

               
               
               Conread position:131-599
               
               
               Cow position:chr13:23667498-23667034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:323
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:132-352
               
               
               Cow position:chr13:50823321-50823536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:132-384
               
               
               Cow position:chr13:18551683-18551436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):97, 153

               
               
               Conread position:132-398
               
               
               Cow position:chr13:51108724-51108465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):144, 14

               
               
               Conread position:133-368
               
               
               Cow position:chr13:20536733-20536503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):147, 7

               
               
               Conread position:133-432
               
               
               Cow position:chr13:30026347-30026048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:133-478
               
               
               Cow position:chr13:52197874-52197536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:133-575
               
               
               Cow position:chr13:24369819-24369385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 148

               
               
               Conread position:134-608
               
               
               Cow position:chr13:47963968-47964412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):191, 60

               
               
               Conread position:135-266
               
               
               Cow position:chr13:19320981-19320852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:135-400
               
               
               Cow position:chr13:54093972-54093717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 86

               
               
               Conread position:136-267
               
               
               Cow position:chr13:17762842-17762969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:136-362
               
               
               Cow position:chr13:11767810-11768037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:136-394
               
               
               Cow position:chr13:9884999-9884745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):80, 130

               
               
               Conread position:136-464
               
               
               Cow position:chr13:11954883-11955209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):185, 11

               
               
               Conread position:136-588
               
               
               Cow position:chr13:20497883-20497429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):73, 132

               
               
               Conread position:136-599
               
               
               Cow position:chr13:19033778-19033331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:137-497
               
               
               Cow position:chr13:12207273-12206923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):187, 128

               
               
               Conread position:137-541
               
               
               Cow position:chr13:43919026-43919432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:138-588
               
               
               Cow position:chr13:43480290-43479849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 144

               
               
               Conread position:139-371
               
               
               Cow position:chr13:11947500-11947740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 215

               
               
               Conread position:139-504
               
               
               Cow position:chr13:54345005-54344648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 141

               
               
               Conread position:139-596
               
               
               Cow position:chr13:31581518-31581959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:140-386
               
               
               Cow position:chr13:35718907-35719156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 132

               
               
               Conread position:140-521
               
               
               Cow position:chr13:17439539-17439918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:141-587
               
               
               Cow position:chr13:36877298-36876853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 124

               
               
               Conread position:142-325
               
               
               Cow position:chr13:33054170-33054350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:142-588
               
               
               Cow position:chr13:15192669-15193102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 73

               
               
               Conread position:142-594
               
               
               Cow position:chr13:37775000-37775425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:143-270
               
               
               Cow position:chr13:53308722-53308591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:143-465
               
               
               Cow position:chr13:4464231-4463919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):69, 126

               
               
               Conread position:143-588
               
               
               Cow position:chr13:37818536-37818958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 20

               
               
               Conread position:144-252
               
               
               Cow position:chr13:19643435-19643543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-595
               
               
               Cow position:chr13:7059698-7059238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 139

               
               
               Conread position:147-270
               
               
               Cow position:chr13:59963-60087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:147-325
               
               
               Cow position:chr13:11147526-11147347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 131

               
               
               Conread position:147-385
               
               
               Cow position:chr13:58389237-58389010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):212, 47

               
               
               Conread position:147-491
               
               
               Cow position:chr13:12202585-12202242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):205, 93

               
               
               Conread position:147-497
               
               
               Cow position:chr13:43868898-43869238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:147-503
               
               
               Cow position:chr13:9643662-9644012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 135

               
               
               Conread position:147-518
               
               
               Cow position:chr13:13465570-13465913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):337, 76

               
               
               Conread position:147-520
               
               
               Cow position:chr13:15281717-15282083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:147-529
               
               
               Cow position:chr13:20679565-20679179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:147-588
               
               
               Cow position:chr13:17745459-17745045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 118

               
               
               Conread position:147-588
               
               
               Cow position:chr13:18170366-18170828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):152, 128

               
               
               Conread position:147-599
               
               
               Cow position:chr13:5263066-5263505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 94

               
               
               Conread position:147-606
               
               
               Cow position:chr13:10845813-10845384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 126

               
               
               Conread position:148-396
               
               
               Cow position:chr13:52199308-52199062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):63, 120

               
               
               Conread position:148-401
               
               
               Cow position:chr13:6975571-6975824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):63, 87

               
               
               Conread position:148-479
               
               
               Cow position:chr13:17347026-17346704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 147

               
               
               Conread position:148-521
               
               
               Cow position:chr13:18172559-18172188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 119

               
               
               Conread position:148-584
               
               
               Cow position:chr13:17004373-17004809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 49

               
               
               Conread position:148-601
               
               
               Cow position:chr13:45073716-45074131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):225, 65

               
               
               Conread position:151-494
               
               
               Cow position:chr13:8245116-8245454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 125

               
               
               Conread position:151-581
               
               
               Cow position:chr13:37804095-37803673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:153-398
               
               
               Cow position:chr13:2192922-2192686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):174, 84

               
               
               Conread position:153-543
               
               
               Cow position:chr13:53195078-53195450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:153-570
               
               
               Cow position:chr13:51014966-51015379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 174

               
               
               Conread position:153-576
               
               
               Cow position:chr13:52227886-52228299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 112

               
               
               Conread position:153-598
               
               
               Cow position:chr13:15257164-15257590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:154-582
               
               
               Cow position:chr13:19022491-19022057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:155-474
               
               
               Cow position:chr13:15528819-15529139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:155-599
               
               
               Cow position:chr13:60341026-60340579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:159-600
               
               
               Cow position:chr13:13339072-13338633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 123

               
               
               Conread position:160-597
               
               
               Cow position:chr13:48598111-48597686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 55

               
               
               Conread position:161-588
               
               
               Cow position:chr13:46112173-46111753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 72

               
               
               Conread position:163-408
               
               
               Cow position:chr13:26316199-26316447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):163, 112

               
               
               Conread position:163-494
               
               
               Cow position:chr13:9593711-9593383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:163-582
               
               
               Cow position:chr13:59170861-59170437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:163-588
               
               
               Cow position:chr13:19223853-19223438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 106

               
               
               Conread position:163-591
               
               
               Cow position:chr13:37592734-37593162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 119

               
               
               Conread position:166-324
               
               
               Cow position:chr13:60393498-60393655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:166-417
               
               
               Cow position:chr13:61990133-61990380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):53, 85

               
               
               Conread position:166-490
               
               
               Cow position:chr13:38033883-38033559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):159, 109

               
               
               Conread position:166-587
               
               
               Cow position:chr13:20509933-20509515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):159, 98

               
               
               Conread position:166-588
               
               
               Cow position:chr13:61188736-61188315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:167-582
               
               
               Cow position:chr13:24230413-24230003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:168-478
               
               
               Cow position:chr13:23512558-23512264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):159, 47

               
               
               Conread position:168-521
               
               
               Cow position:chr13:26369725-26369374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 97

               
               
               Conread position:170-487
               
               
               Cow position:chr13:8652240-8652557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:172-503
               
               
               Cow position:chr13:39368150-39367827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:175-354
               
               
               Cow position:chr13:5079033-5079209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):151, 15

               
               
               Conread position:176-510
               
               
               Cow position:chr13:21283515-21283843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:176-595
               
               
               Cow position:chr13:7032482-7032064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):55, 111

               
               
               Conread position:176-605
               
               
               Cow position:chr13:15991031-15991458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 181

               
               
               Conread position:177-588
               
               
               Cow position:chr13:15195019-15195414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:178-418
               
               
               Cow position:chr13:26901401-26901159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:178-521
               
               
               Cow position:chr13:14771650-14771302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 108

               
               
               Conread position:180-521
               
               
               Cow position:chr13:2404930-2404612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:180-598
               
               
               Cow position:chr13:55583386-55582969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:182-582
               
               
               Cow position:chr13:17338619-17338218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:183-399
               
               
               Cow position:chr13:50546036-50545822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:183-497
               
               
               Cow position:chr13:6540129-6540441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):144, 24

               
               
               Conread position:184-400
               
               
               Cow position:chr13:62474616-62474827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:184-522
               
               
               Cow position:chr13:11644116-11643788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:184-529
               
               
               Cow position:chr13:5082837-5082493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:185-514
               
               
               Cow position:chr13:19188486-19188158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:185-598
               
               
               Cow position:chr13:52055414-52055816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:186-555
               
               
               Cow position:chr13:56605289-56605654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:186-608
               
               
               Cow position:chr13:5758164-5758566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):140, 50

               
               
               Conread position:187-595
               
               
               Cow position:chr13:39232659-39233048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:189-596
               
               
               Cow position:chr13:49824205-49823802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:189-608
               
               
               Cow position:chr13:49022692-49023096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:191-596
               
               
               Cow position:chr13:607085-607484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:191-598
               
               
               Cow position:chr13:20088523-20088942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:191-598
               
               
               Cow position:chr13:25396073-25395657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):108, 74

               
               
               Conread position:192-550
               
               
               Cow position:chr13:14016390-14016738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:193-605
               
               
               Cow position:chr13:13954214-13954626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:194-521
               
               
               Cow position:chr13:4420520-4420180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):86, 81

               
               
               Conread position:195-401
               
               
               Cow position:chr13:19180223-19180418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):183, 24

               
               
               Conread position:197-414
               
               
               Cow position:chr13:7790184-7789965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:198-596
               
               
               Cow position:chr13:29831265-29831648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:199-593
               
               
               Cow position:chr13:20157896-20157511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):179, 24

               
               
               Conread position:199-600
               
               
               Cow position:chr13:867296-866905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:202-491
               
               
               Cow position:chr13:15903182-15902904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 72

               
               
               Conread position:203-515
               
               
               Cow position:chr13:6931081-6930771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:211-401
               
               
               Cow position:chr13:51199475-51199291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:211-488
               
               
               Cow position:chr13:15110476-15110198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):108, 63

               
               
               Conread position:211-515
               
               
               Cow position:chr13:7488695-7488397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:211-522
               
               
               Cow position:chr13:28689622-28689317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:211-533
               
               
               Cow position:chr13:30662160-30661843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 72

               
               
               Conread position:211-588
               
               
               Cow position:chr13:25496162-25495796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):113, 64

               
               
               Conread position:211-595
               
               
               Cow position:chr13:6849086-6848704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 72

               
               
               Conread position:211-601
               
               
               Cow position:chr13:9900305-9899920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):114, 47

               
               
               Conread position:211-612
               
               
               Cow position:chr13:54583033-54582639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 54

               
               
               Conread position:213-483
               
               
               Cow position:chr13:62601159-62600896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:214-587
               
               
               Cow position:chr13:5671439-5671798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:214-600
               
               
               Cow position:chr13:26698344-26698723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 51

               
               
               Conread position:216-521
               
               
               Cow position:chr13:37640737-37640440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):54, 67

               
               
               Conread position:216-575
               
               
               Cow position:chr13:18999693-18999331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:218-507
               
               
               Cow position:chr13:13238726-13238442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):52, 65

               
               
               Conread position:218-596
               
               
               Cow position:chr13:17451243-17450871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 65

               
               
               Conread position:218-610
               
               
               Cow position:chr13:20580054-20579683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:219-605
               
               
               Cow position:chr13:2823007-2822637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):105, 46

               
               
               Conread position:220-591
               
               
               Cow position:chr13:18696989-18696607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:220-611
               
               
               Cow position:chr13:1363841-1363449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:223-498
               
               
               Cow position:chr13:17966065-17966336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:224-468
               
               
               Cow position:chr13:52929852-52929615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:224-596
               
               
               Cow position:chr13:28552739-28552365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:224-598
               
               
               Cow position:chr13:20360413-20360052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):154, 50

               
               
               Conread position:225-519
               
               
               Cow position:chr13:49520680-49520971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:225-598
               
               
               Cow position:chr13:44003861-44003476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:225-608
               
               
               Cow position:chr13:3160533-3160169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):199, 53

               
               
               Conread position:225-638
               
               
               Cow position:chr13:18058107-18058507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:227-596
               
               
               Cow position:chr13:21269440-21269803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:228-517
               
               
               Cow position:chr13:51115889-51116169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 37

               
               
               Conread position:230-591
               
               
               Cow position:chr13:6663614-6663972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:234-400
               
               
               Cow position:chr13:37977346-37977511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:234-596
               
               
               Cow position:chr13:14878819-14879176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:234-613
               
               
               Cow position:chr13:25579054-25579435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:240-578
               
               
               Cow position:chr13:20217261-20217601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:243-582
               
               
               Cow position:chr13:1569047-1568727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:243-588
               
               
               Cow position:chr13:30258970-30258635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:244-585
               
               
               Cow position:chr13:20288453-20288128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):232, 21

               
               
               Conread position:244-595
               
               
               Cow position:chr13:5910773-5911111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):39, 132

               
               
               Conread position:246-588
               
               
               Cow position:chr13:21280366-21280714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:250-575
               
               
               Cow position:chr13:9924127-9924447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:250-575
               
               
               Cow position:chr13:18929648-18929325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 126

               
               
               Conread position:250-588
               
               
               Cow position:chr13:17437751-17438075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 15

               
               
               Conread position:250-588
               
               
               Cow position:chr13:21135783-21136125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:250-597
               
               
               Cow position:chr13:27550856-27550513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:250-598
               
               
               Cow position:chr13:18846517-18846173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:250-605
               
               
               Cow position:chr13:61253143-61252780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:250-607
               
               
               Cow position:chr13:15194615-15194953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:251-577
               
               
               Cow position:chr13:18995244-18994920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:251-596
               
               
               Cow position:chr13:14576322-14575994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:251-608
               
               
               Cow position:chr13:20357777-20358121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 24

               
               
               Conread position:252-575
               
               
               Cow position:chr13:8667734-8667415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:252-596
               
               
               Cow position:chr13:20248624-20248301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:253-516
               
               
               Cow position:chr13:8355313-8355061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:256-575
               
               
               Cow position:chr13:49476199-49475871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:256-597
               
               
               Cow position:chr13:10221060-10220735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:265-598
               
               
               Cow position:chr13:54128489-54128822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:266-595
               
               
               Cow position:chr13:21313572-21313897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:267-588
               
               
               Cow position:chr13:15659377-15659062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:275-596
               
               
               Cow position:chr13:14967122-14967436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):5, 71

               
               
               Conread position:277-531
               
               
               Cow position:chr13:9385935-9386181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:279-515
               
               
               Cow position:chr13:3989294-3989060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:279-529
               
               
               Cow position:chr13:55727991-55727744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:279-539
               
               
               Cow position:chr13:50750963-50751224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:279-572
               
               
               Cow position:chr13:16714171-16714463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 151

               
               
               Conread position:279-581
               
               
               Cow position:chr13:46329513-46329809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:279-592
               
               
               Cow position:chr13:25978100-25978411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:279-595
               
               
               Cow position:chr13:16203760-16203444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:279-598
               
               
               Cow position:chr13:20137915-20137595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:279-611
               
               
               Cow position:chr13:20331311-20330977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:280-596
               
               
               Cow position:chr13:7332910-7333233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:282-598
               
               
               Cow position:chr13:14940892-14940574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:285-608
               
               
               Cow position:chr13:26120278-26120605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:290-596
               
               
               Cow position:chr13:17822871-17823171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:294-598
               
               
               Cow position:chr13:21127266-21127564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:297-529
               
               
               Cow position:chr13:17563809-17563582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:300-595
               
               
               Cow position:chr13:55162281-55161989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:301-574
               
               
               Cow position:chr13:19778780-19779054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:301-584
               
               
               Cow position:chr13:6861251-6860966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:301-595
               
               
               Cow position:chr13:42672353-42672650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:301-605
               
               
               Cow position:chr13:38109658-38109962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:302-584
               
               
               Cow position:chr13:19876261-19876547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:305-584
               
               
               Cow position:chr13:23215083-23214804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:305-586
               
               
               Cow position:chr13:1147092-1147362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:306-567
               
               
               Cow position:chr13:6264859-6264605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:306-588
               
               
               Cow position:chr13:62008176-62007894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:306-608
               
               
               Cow position:chr13:18127543-18127841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:309-600
               
               
               Cow position:chr13:18197546-18197832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:310-595
               
               
               Cow position:chr13:51080708-51080424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:310-596
               
               
               Cow position:chr13:58045706-58045994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:315-533
               
               
               Cow position:chr13:37503526-37503744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:317-582
               
               
               Cow position:chr13:55494470-55494726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 184

               
               
               Conread position:319-596
               
               
               Cow position:chr13:41157452-41157176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:321-543
               
               
               Cow position:chr13:20288700-20288480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:324-518
               
               
               Cow position:chr13:24110529-24110333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:324-575
               
               
               Cow position:chr13:19174649-19174895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:324-596
               
               
               Cow position:chr13:584829-585095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:325-572
               
               
               Cow position:chr13:26720742-26720986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:325-593
               
               
               Cow position:chr13:12423449-12423184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:325-595
               
               
               Cow position:chr13:17433116-17433384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:325-596
               
               
               Cow position:chr13:52459440-52459694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:325-600
               
               
               Cow position:chr13:13471371-13471645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:328-585
               
               
               Cow position:chr13:40541067-40541319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):162, 14

               
               
               Conread position:332-596
               
               
               Cow position:chr13:4981253-4981004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:333-594
               
               
               Cow position:chr13:11103157-11103427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:333-599
               
               
               Cow position:chr13:12673260-12673509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:338-598
               
               
               Cow position:chr13:23804974-23805245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:340-595
               
               
               Cow position:chr13:45130544-45130295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):247, 33

               
               
               Conread position:342-570
               
               
               Cow position:chr13:18681319-18681088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:344-580
               
               
               Cow position:chr13:35557079-35557316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):8, 181

               
               
               Conread position:344-595
               
               
               Cow position:chr13:50646603-50646848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:345-536
               
               
               Cow position:chr13:7440395-7440202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:346-598
               
               
               Cow position:chr13:21171545-21171795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:348-593
               
               
               Cow position:chr13:52640923-52641169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 199

               
               
               Conread position:348-609
               
               
               Cow position:chr13:10096507-10096772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:349-587
               
               
               Cow position:chr13:42640405-42640168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:349-595
               
               
               Cow position:chr13:8425481-8425232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:349-595
               
               
               Cow position:chr13:50601677-50601926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:349-596
               
               
               Cow position:chr13:57436367-57436622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:349-597
               
               
               Cow position:chr13:23141897-23141647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:349-605
               
               
               Cow position:chr13:16003479-16003735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):143, 32

               
               
               Conread position:352-591
               
               
               Cow position:chr13:33054351-33054589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 135

               
               
               Conread position:352-591
               
               
               Cow position:chr13:50457878-50457635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:352-597
               
               
               Cow position:chr13:21170550-21170305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:352-619
               
               
               Cow position:chr13:21980956-21981214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:355-595
               
               
               Cow position:chr13:6889762-6889518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 219

               
               
               Conread position:355-596
               
               
               Cow position:chr13:41190123-41189880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:356-582
               
               
               Cow position:chr13:58333062-58332835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:356-598
               
               
               Cow position:chr13:11933586-11933832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:356-608
               
               
               Cow position:chr13:49392926-49393184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 212

               
               
               Conread position:357-533
               
               
               Cow position:chr13:18615398-18615220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:357-575
               
               
               Cow position:chr13:54353025-54353244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 164

               
               
               Conread position:357-596
               
               
               Cow position:chr13:45428844-45429087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:357-597
               
               
               Cow position:chr13:47675919-47676159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):21, 140

               
               
               Conread position:359-593
               
               
               Cow position:chr13:25941249-25941480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 202

               
               
               Conread position:359-598
               
               
               Cow position:chr13:34873603-34873361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:360-576
               
               
               Cow position:chr13:7292152-7292370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:360-584
               
               
               Cow position:chr13:56958981-56958767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:360-588
               
               
               Cow position:chr13:14645064-14644840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:360-594
               
               
               Cow position:chr13:3961863-3961625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:360-594
               
               
               Cow position:chr13:27181054-27180818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:360-596
               
               
               Cow position:chr13:15997047-15996815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 141

               
               
               Conread position:360-596
               
               
               Cow position:chr13:61344844-61345080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:360-598
               
               
               Cow position:chr13:12946384-12946146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:360-598
               
               
               Cow position:chr13:57985925-57986154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 131

               
               
               Conread position:360-599
               
               
               Cow position:chr13:17611539-17611778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:361-586
               
               
               Cow position:chr13:2776300-2776073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:361-588
               
               
               Cow position:chr13:24215661-24215890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 134

               
               
               Conread position:361-608
               
               
               Cow position:chr13:21866615-21866864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 198

               
               
               Conread position:362-588
               
               
               Cow position:chr13:13775233-13775466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:362-588
               
               
               Cow position:chr13:37614180-37614411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:362-596
               
               
               Cow position:chr13:43183261-43183023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:362-598
               
               
               Cow position:chr13:11434564-11434799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:363-588
               
               
               Cow position:chr13:3143258-3143035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:364-580
               
               
               Cow position:chr13:61001851-61001637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:364-588
               
               
               Cow position:chr13:14411904-14411678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:364-596
               
               
               Cow position:chr13:14796215-14795983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:364-609
               
               
               Cow position:chr13:51695977-51695733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:370-595
               
               
               Cow position:chr13:33868422-33868195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:373-575
               
               
               Cow position:chr13:33973969-33974172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:373-588
               
               
               Cow position:chr13:17813470-17813258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):113, 151

               
               
               Conread position:373-595
               
               
               Cow position:chr13:32017513-32017736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:373-596
               
               
               Cow position:chr13:48222549-48222770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):110, 171

               
               
               Conread position:374-594
               
               
               Cow position:chr13:10727362-10727140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:374-595
               
               
               Cow position:chr13:10522932-10522719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):108, 42

               
               
               Conread position:374-595
               
               
               Cow position:chr13:12923872-12923654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):115, 37

               
               
               Conread position:374-595
               
               
               Cow position:chr13:28536324-28536541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):112, 38

               
               
               Conread position:374-596
               
               
               Cow position:chr13:55081140-55080916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:374-599
               
               
               Cow position:chr13:26726608-26726834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:374-608
               
               
               Cow position:chr13:773354-773123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):136, 93

               
               
               Conread position:374-609
               
               
               Cow position:chr13:18548703-18548467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:376-608
               
               
               Cow position:chr13:53850820-53850588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 215

               
               
               Conread position:377-582
               
               
               Cow position:chr13:16908212-16908006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:377-593
               
               
               Cow position:chr13:4790122-4790341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:377-607
               
               
               Cow position:chr13:40937122-40937351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):210, 73

               
               
               Conread position:377-608
               
               
               Cow position:chr13:62369663-62369430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:378-575
               
               
               Cow position:chr13:4404525-4404334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 141

               
               
               Conread position:378-599
               
               
               Cow position:chr13:8699743-8699968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:379-595
               
               
               Cow position:chr13:50768589-50768371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:379-596
               
               
               Cow position:chr13:15356803-15356588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):161, 182

               
               
               Conread position:379-613
               
               
               Cow position:chr13:1791433-1791666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 224

               
               
               Conread position:381-610
               
               
               Cow position:chr13:21129119-21128890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 152

               
               
               Conread position:382-598
               
               
               Cow position:chr13:24160443-24160226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:382-599
               
               
               Cow position:chr13:22122703-22122484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:383-593
               
               
               Cow position:chr13:24094328-24094535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:383-598
               
               
               Cow position:chr13:30148574-30148780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 136

               
               
               Conread position:384-596
               
               
               Cow position:chr13:39376511-39376297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:384-608
               
               
               Cow position:chr13:26959811-26960030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:386-598
               
               
               Cow position:chr13:26291295-26291087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:386-599
               
               
               Cow position:chr13:45583802-45584019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:388-600
               
               
               Cow position:chr13:13796827-13797042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 207

               
               
               Conread position:388-611
               
               
               Cow position:chr13:18877190-18876966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:388-639
               
               
               Cow position:chr13:46347115-46346865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:389-596
               
               
               Cow position:chr13:9124907-9124707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):100, 65

               
               
               Conread position:389-596
               
               
               Cow position:chr13:17845471-17845263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:389-604
               
               
               Cow position:chr13:6113541-6113760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):10, 206

               
               
               Conread position:390-591
               
               
               Cow position:chr13:11147037-11146837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:391-550
               
               
               Cow position:chr13:17716533-17716693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:392-568
               
               
               Cow position:chr13:13316666-13316489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:392-596
               
               
               Cow position:chr13:55457416-55457217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:393-596
               
               
               Cow position:chr13:5277115-5276910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:395-596
               
               
               Cow position:chr13:7716709-7716911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:396-596
               
               
               Cow position:chr13:7038312-7038112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):92, 150

               
               
               Conread position:396-597
               
               
               Cow position:chr13:16476833-16476631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:402-588
               
               
               Cow position:chr13:28376590-28376775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:404-588
               
               
               Cow position:chr13:23685031-23685216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:405-582
               
               
               Cow position:chr13:50715114-50714939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:405-584
               
               
               Cow position:chr13:1037606-1037427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:405-598
               
               
               Cow position:chr13:37344765-37344571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:405-608
               
               
               Cow position:chr13:8537789-8537586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 196

               
               
               Conread position:406-588
               
               
               Cow position:chr13:37554908-37555084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:407-596
               
               
               Cow position:chr13:62251879-62252066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:407-605
               
               
               Cow position:chr13:57770020-57770215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:412-593
               
               
               Cow position:chr13:21246749-21246931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:412-595
               
               
               Cow position:chr13:10511741-10511927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:412-596
               
               
               Cow position:chr13:10408917-10408732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:413-638
               
               
               Cow position:chr13:55775319-55775108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):162, 42

               
               
               Conread position:416-598
               
               
               Cow position:chr13:26377460-26377644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:421-594
               
               
               Cow position:chr13:8637649-8637474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:421-598
               
               
               Cow position:chr13:1339190-1339367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 170

               
               
               Conread position:421-608
               
               
               Cow position:chr13:15162681-15162870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:422-608
               
               
               Cow position:chr13:10423471-10423288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):67, 78

               
               
               Conread position:423-593
               
               
               Cow position:chr13:3149482-3149651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:423-593
               
               
               Cow position:chr13:17994424-17994591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:423-593
               
               
               Cow position:chr13:19222622-19222454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:423-596
               
               
               Cow position:chr13:28605442-28605616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:423-597
               
               
               Cow position:chr13:14351531-14351361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:423-600
               
               
               Cow position:chr13:20156128-20155949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:423-601
               
               
               Cow position:chr13:20520264-20520082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:424-608
               
               
               Cow position:chr13:17787675-17787864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:425-608
               
               
               Cow position:chr13:26316939-26317124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:428-585
               
               
               Cow position:chr13:16711293-16711136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:428-588
               
               
               Cow position:chr13:6972327-6972167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):58, 118

               
               
               Conread position:428-588
               
               
               Cow position:chr13:25520971-25521137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:428-596
               
               
               Cow position:chr13:5659823-5659986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:428-596
               
               
               Cow position:chr13:21024931-21024762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:428-596
               
               
               Cow position:chr13:22729458-22729627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:428-598
               
               
               Cow position:chr13:23478846-23478674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):54, 96

               
               
               Conread position:428-600
               
               
               Cow position:chr13:56019050-56019222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:428-602
               
               
               Cow position:chr13:31398403-31398230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:428-605
               
               
               Cow position:chr13:26900994-26900816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:428-620
               
               
               Cow position:chr13:43342512-43342321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):187, 71

               
               
               Conread position:429-611
               
               
               Cow position:chr13:10986558-10986747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:430-598
               
               
               Cow position:chr13:3153692-3153524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:430-605
               
               
               Cow position:chr13:17979042-17979215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:433-569
               
               
               Cow position:chr13:49420341-49420203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:433-595
               
               
               Cow position:chr13:43102922-43102760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:433-618
               
               
               Cow position:chr13:22046072-22046259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:435-582
               
               
               Cow position:chr13:8682392-8682244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:435-588
               
               
               Cow position:chr13:28081659-28081503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:435-598
               
               
               Cow position:chr13:23399703-23399543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:435-609
               
               
               Cow position:chr13:20854519-20854693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 166

               
               
               Conread position:436-588
               
               
               Cow position:chr13:48370365-48370514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 88

               
               
               Conread position:437-588
               
               
               Cow position:chr13:2529015-2529165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:437-597
               
               
               Cow position:chr13:29665956-29665794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:437-598
               
               
               Cow position:chr13:2776795-2776632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 143

               
               
               Conread position:438-594
               
               
               Cow position:chr13:3387854-3388011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:438-596
               
               
               Cow position:chr13:20789583-20789740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 62

               
               
               Conread position:438-596
               
               
               Cow position:chr13:21886743-21886902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:438-605
               
               
               Cow position:chr13:29805083-29805243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:441-611
               
               
               Cow position:chr13:39347294-39347465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:441-611
               
               
               Cow position:chr13:55327372-55327204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:459-588
               
               
               Cow position:chr13:30809460-30809588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:459-593
               
               
               Cow position:chr13:43577904-43577769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 0
Show alignments to all cow chromosomes.