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Cow genome map

           
Conread name:
           
Ss1.1-Lng1-LNG010008H04.5
        

               
Conread position:
               
1-112
               

               
Cow position:
               
chr15:2800465-2800355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr15:16515807-16515917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr15:31467617-31467507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-112
               

               
Cow position:
               
chr15:31519106-31519216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr15:16927582-16927695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr15:24129151-24129039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr15:14855981-14856094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr15:36258809-36258922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 20
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr15:35824890-35825007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-121
               

               
Cow position:
               
chr15:45323476-45323358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr15:5461325-5461448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
116, 37
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr15:14577931-14577810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr15:32287264-32287386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr15:38732140-38732263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr15:5730664-5730535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr15:50344238-50344107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 37
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr15:9520752-9520621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr15:53116921-53116792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr15:482063-482195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr15:4821572-4821440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr15:12884465-12884332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr15:16014038-16013905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr15:29811320-29811187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr15:29968678-29968546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr15:33244028-33243891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr15:39406429-39406296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr15:6120882-6121018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr15:15215764-15215631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr15:11692362-11692498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr15:10454316-10454181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr15:7941916-7942055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr15:52207997-52207858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr15:7847103-7846962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr15:10243621-10243761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr15:10284199-10284340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr15:38936390-38936247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr15:6617298-6617447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr15:17192785-17192633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
134, 33
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr15:4770003-4770152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr15:26933548-26933696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr15:46069062-46068910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr15:2643848-2643695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr15:2662994-2662840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr15:4632127-4631974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr15:8937900-8938050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr15:44635977-44636134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr15:21910589-21910438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr15:36781840-36781998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr15:33511313-33511150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr15:2969019-2968852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
135, 37
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr15:25907695-25907535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr15:1602458-1602631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr15:49258540-49258360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr15:5913088-5912895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr15:39418355-39418176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr15:10737307-10737495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr15:16658792-16658607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
134, 38
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr15:52148687-52148496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr15:6506206-6506016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr15:17477287-17477096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr15:16666492-16666678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr15:44576899-44577097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
194, 33
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr15:10442123-10442321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr15:38876209-38876418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr15:36643424-36643623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr15:27934652-27934854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr15:6321143-6321338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr15:12440232-12440450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
114, 33
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr15:23172400-23172193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr15:49073669-49073881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr15:3903347-3903558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr15:42597542-42597757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr15:27711615-27711402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr15:10607585-10607802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr15:6464560-6464778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr15:42430903-42431116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr15:29910756-29910985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr15:6960197-6960423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr15:53566268-53566056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr15:13545565-13545337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr15:21637773-21638003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr15:25068995-25068768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr15:2587821-2587591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 36
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr15:2015952-2016186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr15:2616526-2616302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr15:2632326-2632097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr15:6370912-6370682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr15:32878094-32878325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:1774945-1775178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:3719904-3719671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:3720642-3720409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:4082484-4082717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:8031415-8031183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:8576652-8576885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:10230799-10231036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:13431659-13431892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:16738287-16738054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:21152321-21152088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:21645975-21646208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:21807349-21807582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:32262909-32263142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:34064444-34064677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:36146635-36146868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:38199106-38199339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:43029346-43029578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:50086065-50085832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr15:50309442-50309675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr15:27422930-27423163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr15:311999-311755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr15:5003452-5003210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr15:5692180-5691936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr15:32690455-32690710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr15:53135262-53135005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr15:18661984-18662242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr15:3497509-3497265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr15:4970326-4970592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr15:7855075-7855339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr15:23905226-23905477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 33
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr15:581989-582248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr15:8676693-8676958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr15:37744553-37744818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr15:21902974-21903243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr15:5658631-5658363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 33
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr15:8629810-8630081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr15:30725736-30725470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr15:38817943-38818202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr15:52197846-52198104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr15:6564999-6565258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr15:7554134-7554394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
210, 15
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr15:14757691-14757968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr15:16741567-16741838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr15:35041408-35041671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
210, 39
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr15:22161047-22160777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
221, 26
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr15:27892452-27892205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr15:28177946-28177665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr15:33681126-33680850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr15:2928740-2929005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr15:3652605-3652336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr15:14322578-14322862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr15:37039843-37040099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr15:3289672-3289946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr15:4934099-4934366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr15:7548340-7548609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
228, 37
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr15:9909023-9908748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
200, 33
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr15:12359723-12359444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
67, 34
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr15:25203472-25203197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr15:32715199-32715474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr15:19694589-19694312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
222, 37
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr15:45112025-45111748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
211, 36
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr15:4373944-4373662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 33
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr15:53481910-53481635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr15:21695708-21695988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
218, 33
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr15:13669436-13669718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr15:39090731-39090454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr15:17344400-17344113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr15:6538434-6538725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr15:17772558-17772268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
145, 18
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr15:53130275-53129982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:2081571-2081870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 280
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:4655328-4655618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 37
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:4817329-4817606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
241, 37
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:5199827-5200107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:9135511-9135795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
251, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:14627474-14627768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:17034137-17033841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:18580397-18580692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:42534330-42534628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:42727870-42728161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr15:51221243-51221533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr15:12417215-12416926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr15:49214738-49214444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
248, 36
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr15:24821909-24822212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr15:21948833-21949124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
204, 36
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr15:7586297-7585983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
237, 33
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr15:52982284-52981976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr15:10034173-10033857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr15:25540087-25539774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:1831035-1830718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:2590892-2591208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:2796834-2797150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:3275944-3275640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:4139414-4139099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:6015574-6015255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
217, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:12184292-12183976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:12836860-12837163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:17073863-17073559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:18215068-18215385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:20404183-20403865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:33605385-33605079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:42584707-42585023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:42595258-42595562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:44210050-44209724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr15:50152214-50152528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
244, 33
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr15:12859641-12859956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr15:44771330-44771659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr15:50568640-50568314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
181, 36
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr15:24568258-24567939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr15:53342519-53342836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:3051815-3051498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:5567853-5568178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:5938894-5938569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:6764360-6764036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:6806203-6806523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:9267594-9267904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:19403444-19403129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:21913614-21913289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr15:23716583-23716903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 36
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr15:488775-488450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:5008491-5008164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:5020858-5021184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:5640091-5639767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
234, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:5722211-5722521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
270, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:6380418-6380089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:9835250-9835576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:10827354-10827680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
162, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:18263611-18263285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
244, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:20172212-20171885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:24074544-24074872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:25164604-25164283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
205, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:28486643-28486332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr15:33376339-33376665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr15:442290-441961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
244, 33
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr15:1653472-1653806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr15:1128450-1128129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
215, 10
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr15:22168532-22168184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 37
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr15:29792457-29792792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 33
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr15:41583377-41583024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr15:34744272-34743920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 36
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr15:25825388-25825745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
104, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr15:692904-692542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr15:11398762-11399125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
234, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr15:12443026-12443386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
205, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr15:16937156-16937519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr15:20117575-20117218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 26
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr15:21908910-21908547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr15:36939885-36939523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr15:49191066-49190702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr15:31767746-31767380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 33
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr15:4925644-4926012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr15:34895215-34895577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr15:11289551-11289175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr15:3007341-3006968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr15:7389404-7389777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
109, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr15:20414073-20414451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
134, 36
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr15:22532703-22532333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 49
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr15:23332395-23332777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr15:48297883-48297503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 37
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr15:53118803-53118412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr15:5536218-5535842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 36
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr15:9870946-9871327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 33
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr15:22713375-22713744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
210, 35
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr15:24037941-24038312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr15:46325109-46324724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr15:7749674-7750054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr15:12272057-12271661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 36
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr15:1776660-1777045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr15:37716470-37716855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 37
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr15:13683818-13684191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr15:5728107-5727726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
372, 36
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr15:23703235-23702855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr15:23775492-23775863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 36
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr15:287744-287358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr15:7962552-7962152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr15:38898890-38898498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr15:15707650-15708047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr15:22811994-22811584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr15:33753821-33754231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr15:19119148-19119549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr15:50142025-50141612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr15:18277946-18278364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr15:2008803-2009214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
203, 33
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr15:7268096-7268511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr15:14379061-14378654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr15:20752786-20753197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr15:21958491-21958906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr15:22545134-22544721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr15:24044623-24045041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 36
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:28809-28389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
234, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:348818-349238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:2534231-2534651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:2695194-2694774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:3793786-3794205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:4640953-4641372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:16485729-16486149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 36
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:18230503-18230933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:20132565-20132975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:29018088-29018508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:29236199-29236619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
225, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:31270923-31271343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:33258504-33258084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:49307293-49307710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr15:49685705-49685289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr15:9160272-9159847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr15:40247-39828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 36
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr15:7271842-7272281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr15:27747015-27746576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr15:42940680-42941122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr15:4728648-4729091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr15:6152130-6151689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 33
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr15:7841820-7842267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr15:48557221-48557665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr15:37370355-37369903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr15:37822841-37823299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr15:31357101-31356650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 36
               

               
Conread position:
               
1-465
               

               
Cow position:
               
chr15:27732867-27732423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr15:6588459-6587987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
173, 36
               

               
Conread position:
               
1-470
               

               
Cow position:
               
chr15:18720783-18720320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
1-473
               

               
Cow position:
               
chr15:41360495-41360947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr15:38969601-38969135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr15:50177565-50177111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
129, 36
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr15:2040659-2040183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
215, 38
               

               
Conread position:
               
1-479
               

               
Cow position:
               
chr15:26421133-26421599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr15:23567657-23568133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr15:43248284-43248784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr15:4953914-4954371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 37
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr15:21798816-21798344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr15:22918529-22918046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
164, 33
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr15:30809792-30810266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
275, 36
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr15:13285511-13285010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 34
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr15:31160783-31160305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 30
               

               
Conread position:
               
1-491
               

               
Cow position:
               
chr15:20352308-20351816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
1-491
               

               
Cow position:
               
chr15:44641366-44640880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-492
               

               
Cow position:
               
chr15:7953824-7954322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
119, 38
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr15:7191793-7192284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr15:39082668-39082191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr15:18781516-18782004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 36
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr15:34206730-34207214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 33
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr15:21388702-21389191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 36
               

               
Conread position:
               
1-519
               

               
Cow position:
               
chr15:42415735-42415210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr15:16583243-16583736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr15:33976224-33976741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
376, 37
               

               
Conread position:
               
1-522
               

               
Cow position:
               
chr15:33625436-33624911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
1-523
               

               
Cow position:
               
chr15:45610364-45610881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 36
               

               
Conread position:
               
1-526
               

               
Cow position:
               
chr15:20422296-20422828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 10
               

               
Conread position:
               
1-529
               

               
Cow position:
               
chr15:6530369-6530902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
1-531
               

               
Cow position:
               
chr15:52764262-52764778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 36
               

               
Conread position:
               
1-534
               

               
Cow position:
               
chr15:22095579-22095081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 36
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr15:363482-362959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 27
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr15:31949469-31948922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr15:50302671-50302089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
1-572
               

               
Cow position:
               
chr15:26078901-26079440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr15:6970446-6969889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-577
               

               
Cow position:
               
chr15:17196613-17196046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 12
               

               
Conread position:
               
1-578
               

               
Cow position:
               
chr15:5234536-5235091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 33
               

               
Conread position:
               
1-580
               

               
Cow position:
               
chr15:23531192-23530621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 36
               

               
Conread position:
               
1-582
               

               
Cow position:
               
chr15:1329637-1330213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-582
               

               
Cow position:
               
chr15:47578097-47577491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
1-584
               

               
Cow position:
               
chr15:8578659-8579244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 36
               

               
Conread position:
               
1-584
               

               
Cow position:
               
chr15:10133001-10132420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-586
               

               
Cow position:
               
chr15:4753907-4754468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 36
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr15:16112871-16112284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr15:26911612-26912178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
1-591
               

               
Cow position:
               
chr15:21608262-21608836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 36
               

               
Conread position:
               
1-591
               

               
Cow position:
               
chr15:30047067-30047667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 33
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr15:20370003-20370567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 36
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr15:794549-795133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr15:17268156-17268733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 36
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr15:37395202-37395806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 36
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr15:7430451-7429847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr15:14505896-14505327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 34
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr15:52611800-52611169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr15:6564402-6564988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
244, 33
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr15:12399783-12399181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
155, 33
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr15:20533981-20534572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 36
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr15:22531524-22530962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr15:36435674-36435083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr15:1884882-1885461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
296, 36
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr15:4918591-4919191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr15:6906021-6905418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 37
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr15:36392131-36391551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 22
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr15:50957324-50957931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 243
               

               
Conread position:
               
1-599
               

               
Cow position:
               
chr15:6647917-6647327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr15:4138599-4138014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 39
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr15:6163614-6163027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr15:24968256-24967678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 36
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr15:32741978-32742584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
203, 36
               

               
Conread position:
               
1-601
               

               
Cow position:
               
chr15:16604291-16603709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
1-604
               

               
Cow position:
               
chr15:37382091-37381501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 36
               

               
Conread position:
               
1-605
               

               
Cow position:
               
chr15:6226728-6227303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
1-607
               

               
Cow position:
               
chr15:1082919-1083498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 10
               

               
Conread position:
               
1-607
               

               
Cow position:
               
chr15:43827307-43827903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr15:3257016-3256388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr15:20458833-20459444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 11
               

               
Conread position:
               
1-611
               

               
Cow position:
               
chr15:10456531-10457162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr15:24617032-24616429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 36
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr15:30985328-30985927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 33
               

               
Conread position:
               
2-130
               

               
Cow position:
               
chr15:8665079-8665206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-134
               

               
Cow position:
               
chr15:38883670-38883538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr15:6366620-6366491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr15:32698408-32698543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-159
               

               
Cow position:
               
chr15:53102157-53102001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr15:39831712-39831887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr15:276211-276012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr15:30324476-30324698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr15:21532639-21532381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 32
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr15:11675168-11675441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 35
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr15:911301-911029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
224, 38
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr15:6550113-6549816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 35
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr15:9392852-9393161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 35
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr15:31992994-31992677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 35
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chr15:6082177-6082511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 21
               

               
Conread position:
               
2-350
               

               
Cow position:
               
chr15:47822254-47821930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
2-374
               

               
Cow position:
               
chr15:4642701-4643076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 35
               

               
Conread position:
               
2-405
               

               
Cow position:
               
chr15:53019854-53019472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-565
               

               
Cow position:
               
chr15:47274827-47274277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 35
               

               
Conread position:
               
2-588
               

               
Cow position:
               
chr15:46563010-46563587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 36
               

               
Conread position:
               
2-596
               

               
Cow position:
               
chr15:5571165-5571747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
2-596
               

               
Cow position:
               
chr15:20472078-20472662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 35
               

               
Conread position:
               
2-596
               

               
Cow position:
               
chr15:43030554-43031144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 36
               

               
Conread position:
               
2-605
               

               
Cow position:
               
chr15:25666747-25667352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 36
               

               
Conread position:
               
3-122
               

               
Cow position:
               
chr15:3494345-3494227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr15:48965988-48965803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr15:34077432-34077639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr15:42529081-42528852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr15:42536465-42536236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr15:33455801-33456028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr15:7511841-7511610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr15:29654148-29654379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr15:47634549-47634291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
247, 31
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr15:23054719-23054453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
119, 34
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr15:9038406-9038131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
223, 31
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr15:20328914-20328649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
232, 35
               

               
Conread position:
               
3-292
               

               
Cow position:
               
chr15:44073948-44074237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
180, 34
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr15:12736718-12737005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
234, 34
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr15:18284707-18284398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 12
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr15:41087396-41087710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 34
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr15:14879534-14879855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 34
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr15:34104733-34104322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 34
               

               
Conread position:
               
3-427
               

               
Cow position:
               
chr15:6331595-6331990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 24
               

               
Conread position:
               
3-450
               

               
Cow position:
               
chr15:15234049-15233606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
3-460
               

               
Cow position:
               
chr15:4627813-4627357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 34
               

               
Conread position:
               
3-505
               

               
Cow position:
               
chr15:17260697-17261192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 34
               

               
Conread position:
               
3-520
               

               
Cow position:
               
chr15:13554807-13554307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
3-556
               

               
Cow position:
               
chr15:32226422-32226944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 34
               

               
Conread position:
               
3-582
               

               
Cow position:
               
chr15:26388491-26387907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 34
               

               
Conread position:
               
3-589
               

               
Cow position:
               
chr15:15040970-15041539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 20
               

               
Conread position:
               
3-594
               

               
Cow position:
               
chr15:19054716-19054112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 31
               

               
Conread position:
               
3-595
               

               
Cow position:
               
chr15:23798055-23798639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 31
               

               
Conread position:
               
3-598
               

               
Cow position:
               
chr15:1301607-1301026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 35
               

               
Conread position:
               
3-613
               

               
Cow position:
               
chr15:608622-608007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 31
               

               
Conread position:
               
4-125
               

               
Cow position:
               
chr15:19725254-19725372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr15:35946750-35946624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr15:6290735-6290910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr15:28172138-28172319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr15:28513621-28513825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
104, 30
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr15:14058620-14058419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr15:30790814-30790609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr15:174648-174871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr15:49415027-49414799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr15:19782610-19782845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr15:33228553-33228318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 19
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr15:39445740-39445499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr15:50089734-50089489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 33
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr15:9439087-9439339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
220, 33
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr15:23103374-23103626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
220, 33
               

               
Conread position:
               
4-266
               

               
Cow position:
               
chr15:53012433-53012169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr15:8003872-8003612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
222, 30
               

               
Conread position:
               
4-270
               

               
Cow position:
               
chr15:15865708-15865976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 33
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr15:39363558-39363819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr15:32976515-32976240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
163, 30
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr15:32325786-32325509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
4-478
               

               
Cow position:
               
chr15:32647647-32648112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
4-478
               

               
Cow position:
               
chr15:32675389-32674924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr15:45350829-45351293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
290, 33
               

               
Conread position:
               
4-575
               

               
Cow position:
               
chr15:24797336-24797900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
4-588
               

               
Cow position:
               
chr15:14871206-14870645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
4-593
               

               
Cow position:
               
chr15:45479474-45478883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
4-594
               

               
Cow position:
               
chr15:4676539-4677115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
4-595
               

               
Cow position:
               
chr15:38162474-38161883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 33
               

               
Conread position:
               
5-125
               

               
Cow position:
               
chr15:38395087-38394966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
111, 32
               

               
Conread position:
               
5-151
               

               
Cow position:
               
chr15:11987153-11987013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr15:44164536-44164339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
5-292
               

               
Cow position:
               
chr15:29542462-29542172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 29
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chr15:9062111-9062448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr15:22759508-22759150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 32
               

               
Conread position:
               
5-423
               

               
Cow position:
               
chr15:11270154-11270570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
218, 29
               

               
Conread position:
               
5-582
               

               
Cow position:
               
chr15:52778070-52778628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
5-605
               

               
Cow position:
               
chr15:28924302-28924889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
6-139
               

               
Cow position:
               
chr15:46861054-46861186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-141
               

               
Cow position:
               
chr15:21826371-21826505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-149
               

               
Cow position:
               
chr15:438909-438764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
6-151
               

               
Cow position:
               
chr15:5213487-5213343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-154
               

               
Cow position:
               
chr15:2820859-2821006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-155
               

               
Cow position:
               
chr15:39560381-39560529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-155
               

               
Cow position:
               
chr15:50057655-50057507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-158
               

               
Cow position:
               
chr15:4796460-4796309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-160
               

               
Cow position:
               
chr15:44510698-44510852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr15:16800221-16800023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-227
               

               
Cow position:
               
chr15:33316793-33316569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr15:62958-63184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr15:8047812-8048039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:3004731-3004503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
160, 28
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:6098308-6098536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:25181326-25181098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:25463023-25462795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:29008847-29008619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:41105539-41105311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:50142764-50142992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:50323523-50323295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:52980033-52979805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:53053581-53053809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr15:53419810-53419582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-263
               

               
Cow position:
               
chr15:224978-225238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 31
               
UCSC Genome Browser

               
Conread position:
               
6-268
               

               
Cow position:
               
chr15:5920756-5921021 (view  custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
210, 31
               
UCSC Genome Browser

               
               
               
Conread position:
6-268

               
               
               
Cow position:
chr15:22138051-22137786 (view  custom track)

               
               
               
Alignm length:
267

               
               
               
Alignm identity:
194

               
               
               
Alignm E-value:
5.04467e-44

               
               
               
Alignm gaps (pig, cow):
217, 28
UCSC Genome Browser

               
               
               
Conread position:
6-272

               
               
               
Cow position:
chr15:6377605-6377338 (view  custom track)

               
               
               
Alignm length:
269

               
               
               
Alignm identity:
195

               
               
               
Alignm E-value:
1.4013e-45

               
               
               
Alignm gaps (pig, cow):
231, 28

               
               
               Conread position:6-272
               
               
               Cow position:chr15:28981930-28981661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 31

               
               
               Conread position:6-273
               
               
               Cow position:chr15:1735631-1735901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):217, 31

               
               
               Conread position:6-273
               
               
               Cow position:chr15:5479933-5479664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-273
               
               
               Cow position:chr15:7453165-7452895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-273
               
               
               Cow position:chr15:15139056-15138786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-273
               
               
               Cow position:chr15:23665989-23665712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:6-273
               
               
               Cow position:chr15:24088407-24088677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-273
               
               
               Cow position:chr15:39016118-39015848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-273
               
               
               Cow position:chr15:43239935-43239665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-273
               
               
               Cow position:chr15:45707802-45708072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-277
               
               
               Cow position:chr15:8272162-8271892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:6-297
               
               
               Cow position:chr15:20309420-20309120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:6-316
               
               
               Cow position:chr15:21438322-21438011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-316
               
               
               Cow position:chr15:44356939-44356628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-325
               
               
               Cow position:chr15:52744609-52744287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):232, 31

               
               
               Conread position:6-327
               
               
               Cow position:chr15:25133446-25133768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:6-396
               
               
               Cow position:chr15:16936403-16936768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 28

               
               
               Conread position:6-415
               
               
               Cow position:chr15:44355654-44355247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-416
               
               
               Cow position:chr15:20015645-20015237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-423
               
               
               Cow position:chr15:23554907-23554492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-423
               
               
               Cow position:chr15:32292889-32292474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-423
               
               
               Cow position:chr15:45944193-45943778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:6-450
               
               
               Cow position:chr15:38984179-38984625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):217, 31

               
               
               Conread position:6-486
               
               
               Cow position:chr15:7578663-7579145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 31

               
               
               Conread position:6-505
               
               
               Cow position:chr15:35749791-35749278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:338
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:6-550
               
               
               Cow position:chr15:41323920-41323373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:6-588
               
               
               Cow position:chr15:20390826-20391387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 28

               
               
               Conread position:6-591
               
               
               Cow position:chr15:4788497-4789080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 31

               
               
               Conread position:6-598
               
               
               Cow position:chr15:40797970-40798538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:7-125
               
               
               Cow position:chr15:3538873-3538990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:7-139
               
               
               Cow position:chr15:33525939-33525811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:7-188
               
               
               Cow position:chr15:19910837-19910649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:7-212
               
               
               Cow position:chr15:16303506-16303303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:7-221
               
               
               Cow position:chr15:13791459-13791672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):162, 27

               
               
               Conread position:7-224
               
               
               Cow position:chr15:36724663-36724876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:7-234
               
               
               Cow position:chr15:19858275-19858046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:7-235
               
               
               Cow position:chr15:7264577-7264807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):209, 27

               
               
               Conread position:7-258
               
               
               Cow position:chr15:13943661-13943406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:7-266
               
               
               Cow position:chr15:32475873-32475611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):179, 30

               
               
               Conread position:7-269
               
               
               Cow position:chr15:23265095-23265349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:7-270
               
               
               Cow position:chr15:12259787-12259536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:7-270
               
               
               Cow position:chr15:40290081-40289816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:7-271
               
               
               Cow position:chr15:37985093-37985360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 144

               
               
               Conread position:7-273
               
               
               Cow position:chr15:16345164-16344895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 27

               
               
               Conread position:7-290
               
               
               Cow position:chr15:36618660-36618358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:7-294
               
               
               Cow position:chr15:8754976-8755252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):216, 31

               
               
               Conread position:7-296
               
               
               Cow position:chr15:7320061-7320350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):204, 30

               
               
               Conread position:7-296
               
               
               Cow position:chr15:15343604-15343316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 30

               
               
               Conread position:7-296
               
               
               Cow position:chr15:52749760-52750045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):151, 27

               
               
               Conread position:7-305
               
               
               Cow position:chr15:23865566-23865859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 30

               
               
               Conread position:7-307
               
               
               Cow position:chr15:31086013-31085702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:7-316
               
               
               Cow position:chr15:9071968-9072272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:7-327
               
               
               Cow position:chr15:3154422-3154742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):208, 30

               
               
               Conread position:7-350
               
               
               Cow position:chr15:38846550-38846224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 27

               
               
               Conread position:7-374
               
               
               Cow position:chr15:29476037-29475669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 30

               
               
               Conread position:7-408
               
               
               Cow position:chr15:24285449-24285046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:7-423
               
               
               Cow position:chr15:425925-426333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 30

               
               
               Conread position:7-448
               
               
               Cow position:chr15:4389253-4389689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 30

               
               
               Conread position:7-487
               
               
               Cow position:chr15:47842805-47843262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 18

               
               
               Conread position:7-523
               
               
               Cow position:chr15:53183117-53183622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 27

               
               
               Conread position:7-579
               
               
               Cow position:chr15:21831961-21832540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 31

               
               
               Conread position:7-582
               
               
               Cow position:chr15:31202468-31201898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 30

               
               
               Conread position:7-588
               
               
               Cow position:chr15:43626919-43626354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 16

               
               
               Conread position:7-596
               
               
               Cow position:chr15:18605844-18605289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 30

               
               
               Conread position:8-185
               
               
               Cow position:chr15:13077028-13077203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 27

               
               
               Conread position:8-234
               
               
               Cow position:chr15:38644473-38644248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:8-237
               
               
               Cow position:chr15:6158685-6158913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:8-237
               
               
               Cow position:chr15:11595877-11595653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:8-247
               
               
               Cow position:chr15:52748640-52748408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-255
               
               
               Cow position:chr15:42598901-42599147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):222, 29

               
               
               Conread position:8-263
               
               
               Cow position:chr15:50294108-50294363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):215, 26

               
               
               Conread position:8-270
               
               
               Cow position:chr15:17288494-17288747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:8-273
               
               
               Cow position:chr15:43756650-43756380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:8-310
               
               
               Cow position:chr15:38683663-38683373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):6, 27

               
               
               Conread position:8-345
               
               
               Cow position:chr15:3893089-3893425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):224, 29

               
               
               Conread position:8-350
               
               
               Cow position:chr15:33313984-33314327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-416
               
               
               Cow position:chr15:3837773-3838179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):215, 26

               
               
               Conread position:8-418
               
               
               Cow position:chr15:237195-236793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 198

               
               
               Conread position:8-423
               
               
               Cow position:chr15:3734600-3734187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):215, 26

               
               
               Conread position:8-426
               
               
               Cow position:chr15:67061-66647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:283
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):227, 26

               
               
               Conread position:8-507
               
               
               Cow position:chr15:143771-144280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:8-512
               
               
               Cow position:chr15:15881383-15880889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:8-517
               
               
               Cow position:chr15:51632583-51633098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 26

               
               
               Conread position:8-572
               
               
               Cow position:chr15:4670027-4669462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:8-584
               
               
               Cow position:chr15:27123087-27123642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-588
               
               
               Cow position:chr15:17233646-17233076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 29

               
               
               Conread position:8-588
               
               
               Cow position:chr15:25208305-25208869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 26

               
               
               Conread position:8-588
               
               
               Cow position:chr15:30800345-30799787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-593
               
               
               Cow position:chr15:18018384-18017812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:391
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:8-596
               
               
               Cow position:chr15:32979568-32980152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:8-598
               
               
               Cow position:chr15:42143313-42142752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:8-608
               
               
               Cow position:chr15:5498569-5499159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:9-232
               
               
               Cow position:chr15:53712147-53712368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:9-239
               
               
               Cow position:chr15:8061702-8061931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):215, 28

               
               
               Conread position:9-296
               
               
               Cow position:chr15:11363087-11363374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 28

               
               
               Conread position:9-354
               
               
               Cow position:chr15:29272656-29272305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:9-471
               
               
               Cow position:chr15:32064794-32064340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:307
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):202, 29

               
               
               Conread position:10-211
               
               
               Cow position:chr15:17341429-17341230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:10-221
               
               
               Cow position:chr15:10784636-10784842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:10-325
               
               
               Cow position:chr15:9624336-9624021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 27

               
               
               Conread position:10-325
               
               
               Cow position:chr15:18206058-18206364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:10-521
               
               
               Cow position:chr15:10336211-10335710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 24

               
               
               Conread position:10-567
               
               
               Cow position:chr15:6385818-6385257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 13

               
               
               Conread position:12-265
               
               
               Cow position:chr15:15098795-15099050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):142, 22

               
               
               Conread position:13-135
               
               
               Cow position:chr15:28450568-28450450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-163
               
               
               Cow position:chr15:7575583-7575724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-221
               
               
               Cow position:chr15:12199569-12199776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:13-268
               
               
               Cow position:chr15:7980608-7980353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-270
               
               
               Cow position:chr15:31855070-31855317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:13-575
               
               
               Cow position:chr15:33306563-33306023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 21

               
               
               Conread position:14-164
               
               
               Cow position:chr15:17695157-17695305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-195
               
               
               Cow position:chr15:7843057-7843237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:14-232
               
               
               Cow position:chr15:1134750-1134536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-234
               
               
               Cow position:chr15:50183597-50183815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:14-235
               
               
               Cow position:chr15:30041513-30041735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:14-268
               
               
               Cow position:chr15:61399-61656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):200, 23

               
               
               Conread position:14-272
               
               
               Cow position:chr15:9971242-9971499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):191, 20

               
               
               Conread position:14-296
               
               
               Cow position:chr15:44829490-44829777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:14-297
               
               
               Cow position:chr15:32611336-32611620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 23

               
               
               Conread position:14-316
               
               
               Cow position:chr15:3724602-3724299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:14-316
               
               
               Cow position:chr15:36328951-36328649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):197, 20

               
               
               Conread position:14-327
               
               
               Cow position:chr15:19369987-19369678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):149, 23

               
               
               Conread position:14-358
               
               
               Cow position:chr15:18757254-18756928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):282, 23

               
               
               Conread position:14-418
               
               
               Cow position:chr15:22255435-22255837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:14-471
               
               
               Cow position:chr15:1251223-1250767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:14-588
               
               
               Cow position:chr15:53493733-53493172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:376
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):227, 23

               
               
               Conread position:14-597
               
               
               Cow position:chr15:51822598-51822031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 23

               
               
               Conread position:15-232
               
               
               Cow position:chr15:1076451-1076665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-235
               
               
               Cow position:chr15:4836928-4837142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:15-269
               
               
               Cow position:chr15:24976736-24976992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 19

               
               
               Conread position:15-316
               
               
               Cow position:chr15:44297515-44297209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):132, 259

               
               
               Conread position:15-596
               
               
               Cow position:chr15:33285325-33284758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 22

               
               
               Conread position:16-135
               
               
               Cow position:chr15:44811184-44811069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:16-269
               
               
               Cow position:chr15:50991432-50991179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):165, 18

               
               
               Conread position:17-193
               
               
               Cow position:chr15:49245215-49245390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:17-217
               
               
               Cow position:chr15:12497286-12497482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):142, 20

               
               
               Conread position:17-230
               
               
               Cow position:chr15:49603211-49603000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):194, 15

               
               
               Conread position:17-269
               
               
               Cow position:chr15:18715684-18715433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):96, 20

               
               
               Conread position:17-290
               
               
               Cow position:chr15:22099452-22099179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):184, 17

               
               
               Conread position:17-363
               
               
               Cow position:chr15:52758304-52757958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):228, 17

               
               
               Conread position:17-423
               
               
               Cow position:chr15:1267878-1268282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):165, 17

               
               
               Conread position:17-473
               
               
               Cow position:chr15:49738594-49739031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 17

               
               
               Conread position:17-484
               
               
               Cow position:chr15:4603472-4603013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:306
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):39, 20

               
               
               Conread position:17-598
               
               
               Cow position:chr15:20390251-20390830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 20

               
               
               Conread position:19-224
               
               
               Cow position:chr15:11271077-11270874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:19-295
               
               
               Cow position:chr15:10232452-10232187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:19-310
               
               
               Cow position:chr15:28039203-28038920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:19-600
               
               
               Cow position:chr15:47042174-47042764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:20-177
               
               
               Cow position:chr15:31990782-31990935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:20-235
               
               
               Cow position:chr15:52607371-52607163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:20-263
               
               
               Cow position:chr15:40837463-40837708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):138, 17

               
               
               Conread position:20-358
               
               
               Cow position:chr15:16640233-16639897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 17

               
               
               Conread position:20-401
               
               
               Cow position:chr15:32204457-32204824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 17

               
               
               Conread position:20-423
               
               
               Cow position:chr15:4200158-4200559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 14

               
               
               Conread position:20-507
               
               
               Cow position:chr15:27862880-27863359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 17

               
               
               Conread position:20-588
               
               
               Cow position:chr15:20486757-20487311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:21-503
               
               
               Cow position:chr15:16543015-16543480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):349, 13

               
               
               Conread position:22-234
               
               
               Cow position:chr15:33676569-33676352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):140, 15

               
               
               Conread position:22-269
               
               
               Cow position:chr15:37919305-37919071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:22-617
               
               
               Cow position:chr15:26896273-26896841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 12

               
               
               Conread position:23-212
               
               
               Cow position:chr15:26316126-26315938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:23-222
               
               
               Cow position:chr15:38605538-38605739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:23-267
               
               
               Cow position:chr15:27282236-27282006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:23-273
               
               
               Cow position:chr15:7566514-7566767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):188, 11

               
               
               Conread position:23-273
               
               
               Cow position:chr15:18249745-18249998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):200, 11

               
               
               Conread position:23-279
               
               
               Cow position:chr15:31489574-31489833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):200, 11

               
               
               Conread position:23-350
               
               
               Cow position:chr15:37485365-37485039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):169, 15

               
               
               Conread position:23-489
               
               
               Cow position:chr15:40546735-40547195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 14

               
               
               Conread position:23-504
               
               
               Cow position:chr15:53353109-53353577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 14

               
               
               Conread position:23-523
               
               
               Cow position:chr15:16616640-16616143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 11

               
               
               Conread position:23-563
               
               
               Cow position:chr15:25584633-25585177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:24-178
               
               
               Cow position:chr15:29863485-29863329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:24-178
               
               
               Cow position:chr15:32856041-32856195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:24-232
               
               
               Cow position:chr15:26735057-26734849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:24-273
               
               
               Cow position:chr15:45196170-45195918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):199, 10

               
               
               Conread position:24-316
               
               
               Cow position:chr15:47892165-47892458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:24-470
               
               
               Cow position:chr15:47279712-47280133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 14

               
               
               Conread position:25-166
               
               
               Cow position:chr15:27128424-27128563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:25-221
               
               
               Cow position:chr15:25121118-25120925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:25-267
               
               
               Cow position:chr15:44863199-44863441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):171, 9

               
               
               Conread position:25-280
               
               
               Cow position:chr15:4623930-4623665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:25-282
               
               
               Cow position:chr15:10450451-10450717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:25-316
               
               
               Cow position:chr15:34255298-34255586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:25-316
               
               
               Cow position:chr15:38000734-38000442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):198, 12

               
               
               Conread position:26-171
               
               
               Cow position:chr15:9437314-9437457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:26-222
               
               
               Cow position:chr15:7446976-7446785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:26-234
               
               
               Cow position:chr15:40203461-40203668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:26-268
               
               
               Cow position:chr15:17164518-17164756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):197, 12

               
               
               Conread position:26-268
               
               
               Cow position:chr15:24639550-24639787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):200, 11

               
               
               Conread position:26-272
               
               
               Cow position:chr15:21967775-21968029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:26-327
               
               
               Cow position:chr15:693463-693757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):191, 11

               
               
               Conread position:26-358
               
               
               Cow position:chr15:25110723-25111056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 8

               
               
               Conread position:26-506
               
               
               Cow position:chr15:46868265-46868745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 8

               
               
               Conread position:26-575
               
               
               Cow position:chr15:1056298-1055753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 11

               
               
               Conread position:27-193
               
               
               Cow position:chr15:23927047-23927219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:27-205
               
               
               Cow position:chr15:33475446-33475622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:27-222
               
               
               Cow position:chr15:48406905-48407097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):158, 7

               
               
               Conread position:27-615
               
               
               Cow position:chr15:44977-45562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 10

               
               
               Conread position:29-215
               
               
               Cow position:chr15:3874148-3873968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:29-221
               
               
               Cow position:chr15:49067451-49067640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:29-255
               
               
               Cow position:chr15:5883660-5883887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):197, 5

               
               
               Conread position:29-415
               
               
               Cow position:chr15:22751889-22751513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 9

               
               
               Conread position:30-232
               
               
               Cow position:chr15:27627384-27627582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:30-238
               
               
               Cow position:chr15:26514557-26514344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:30-269
               
               
               Cow position:chr15:37470632-37470398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 105

               
               
               Conread position:33-221
               
               
               Cow position:chr15:25048828-25049020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 171

               
               
               Conread position:33-247
               
               
               Cow position:chr15:5931014-5930802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:36-255
               
               
               Cow position:chr15:22564776-22564560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):158, 33

               
               
               Conread position:36-269
               
               
               Cow position:chr15:20612596-20612825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:36-269
               
               
               Cow position:chr15:22607242-22607011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:36-296
               
               
               Cow position:chr15:7517704-7517968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 245

               
               
               Conread position:36-393
               
               
               Cow position:chr15:36423084-36422741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:36-400
               
               
               Cow position:chr15:40065263-40065615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:36-423
               
               
               Cow position:chr15:8643705-8643319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):187, 243

               
               
               Conread position:36-593
               
               
               Cow position:chr15:47990327-47990881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 217

               
               
               Conread position:36-594
               
               
               Cow position:chr15:45245116-45245657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 16

               
               
               Conread position:37-209
               
               
               Cow position:chr15:29981354-29981182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:37-234
               
               
               Cow position:chr15:10120414-10120219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:37-263
               
               
               Cow position:chr15:15645162-15644936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):197, 209

               
               
               Conread position:37-277
               
               
               Cow position:chr15:13113873-13114118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:37-479
               
               
               Cow position:chr15:13387514-13387074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 15

               
               
               Conread position:38-195
               
               
               Cow position:chr15:7207506-7207349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:38-270
               
               
               Cow position:chr15:51913888-51914124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):115, 70

               
               
               Conread position:38-296
               
               
               Cow position:chr15:49413619-49413881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):153, 243

               
               
               Conread position:38-363
               
               
               Cow position:chr15:25510740-25511067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):185, 241

               
               
               Conread position:38-475
               
               
               Cow position:chr15:9493865-9494297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 76

               
               
               Conread position:38-588
               
               
               Cow position:chr15:47803960-47803424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 178

               
               
               Conread position:40-270
               
               
               Cow position:chr15:21180453-21180688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:40-299
               
               
               Cow position:chr15:38207547-38207813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 232

               
               
               Conread position:40-423
               
               
               Cow position:chr15:27015681-27015299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):183, 239

               
               
               Conread position:40-516
               
               
               Cow position:chr15:16778758-16778283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:40-578
               
               
               Cow position:chr15:30982345-30981852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 78

               
               
               Conread position:41-237
               
               
               Cow position:chr15:17937232-17937426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 115

               
               
               Conread position:41-268
               
               
               Cow position:chr15:35739550-35739770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):188, 44

               
               
               Conread position:41-614
               
               
               Cow position:chr15:3699854-3700423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 76

               
               
               Conread position:42-193
               
               
               Cow position:chr15:36415057-36415210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:42-573
               
               
               Cow position:chr15:39490222-39490756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 239

               
               
               Conread position:42-601
               
               
               Cow position:chr15:17869865-17870415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 164

               
               
               Conread position:43-280
               
               
               Cow position:chr15:11720661-11720429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):185, 68

               
               
               Conread position:43-283
               
               
               Cow position:chr15:2444960-2444723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 79

               
               
               Conread position:43-484
               
               
               Cow position:chr15:1758567-1758130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:282
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):168, 104

               
               
               Conread position:44-268
               
               
               Cow position:chr15:45919812-45919586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:44-268
               
               
               Cow position:chr15:50444278-50444506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:44-284
               
               
               Cow position:chr15:33219372-33219128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:44-484
               
               
               Cow position:chr15:16493107-16492667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 238

               
               
               Conread position:44-529
               
               
               Cow position:chr15:40999625-41000123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 238

               
               
               Conread position:46-139
               
               
               Cow position:chr15:52451966-52452059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:81
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-296
               
               
               Cow position:chr15:28150672-28150420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):12, 233

               
               
               Conread position:49-270
               
               
               Cow position:chr15:7506876-7506659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:49-324
               
               
               Cow position:chr15:9888726-9888988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):174, 58

               
               
               Conread position:50-193
               
               
               Cow position:chr15:6508096-6507953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-408
               
               
               Cow position:chr15:52380709-52380356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 94

               
               
               Conread position:52-415
               
               
               Cow position:chr15:46611337-46610993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:52-604
               
               
               Cow position:chr15:29026459-29027009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 230

               
               
               Conread position:53-575
               
               
               Cow position:chr15:4485562-4485051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 162

               
               
               Conread position:53-582
               
               
               Cow position:chr15:26752598-26753092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:53-593
               
               
               Cow position:chr15:51460654-51460121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:367
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 184

               
               
               Conread position:54-449
               
               
               Cow position:chr15:27281279-27280898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):300, 85

               
               
               Conread position:54-472
               
               
               Cow position:chr15:20267057-20266639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 214

               
               
               Conread position:55-416
               
               
               Cow position:chr15:3782324-3782683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):168, 5

               
               
               Conread position:55-440
               
               
               Cow position:chr15:7237653-7238042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):107, 113

               
               
               Conread position:55-593
               
               
               Cow position:chr15:35838670-35839212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 145

               
               
               Conread position:56-295
               
               
               Cow position:chr15:1786617-1786858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):180, 166

               
               
               Conread position:57-270
               
               
               Cow position:chr15:1687572-1687355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):63, 87

               
               
               Conread position:57-273
               
               
               Cow position:chr15:19959330-19959113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):154, 90

               
               
               Conread position:57-386
               
               
               Cow position:chr15:5527601-5527270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:57-475
               
               
               Cow position:chr15:16787069-16786677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:57-568
               
               
               Cow position:chr15:52482415-52482919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:57-568
               
               
               Cow position:chr15:53164433-53163930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 90

               
               
               Conread position:57-575
               
               
               Cow position:chr15:53102002-53101487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 102

               
               
               Conread position:58-327
               
               
               Cow position:chr15:27890545-27890814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):165, 6

               
               
               Conread position:59-193
               
               
               Cow position:chr15:9648323-9648451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:59-607
               
               
               Cow position:chr15:29883538-29882989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:350
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):285, 50

               
               
               Conread position:60-220
               
               
               Cow position:chr15:32485280-32485121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):116, 104

               
               
               Conread position:60-298
               
               
               Cow position:chr15:4689592-4689823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):151, 105

               
               
               Conread position:60-374
               
               
               Cow position:chr15:19733773-19733459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):151, 76

               
               
               Conread position:60-416
               
               
               Cow position:chr15:6562692-6562334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 222

               
               
               Conread position:60-469
               
               
               Cow position:chr15:13515780-13515373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 86

               
               
               Conread position:60-575
               
               
               Cow position:chr15:33662905-33662414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 192

               
               
               Conread position:62-263
               
               
               Cow position:chr15:15171108-15171313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:63-199
               
               
               Cow position:chr15:13711958-13712094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-268
               
               
               Cow position:chr15:8463742-8463534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):61, 105

               
               
               Conread position:63-270
               
               
               Cow position:chr15:34176054-34176260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:63-350
               
               
               Cow position:chr15:27247916-27247622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):148, 35

               
               
               Conread position:63-400
               
               
               Cow position:chr15:53680363-53680684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 12

               
               
               Conread position:63-402
               
               
               Cow position:chr15:23486765-23487094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 131

               
               
               Conread position:64-273
               
               
               Cow position:chr15:45672187-45671974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:64-358
               
               
               Cow position:chr15:19781941-19781663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 158

               
               
               Conread position:64-423
               
               
               Cow position:chr15:31084885-31084527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):159, 215

               
               
               Conread position:64-605
               
               
               Cow position:chr15:17084616-17084078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 26

               
               
               Conread position:65-431
               
               
               Cow position:chr15:30820417-30820792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):48, 195

               
               
               Conread position:65-595
               
               
               Cow position:chr15:23180825-23180324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 22

               
               
               Conread position:65-596
               
               
               Cow position:chr15:8428411-8427894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 111

               
               
               Conread position:66-234
               
               
               Cow position:chr15:4712734-4712566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-280
               
               
               Cow position:chr15:34283945-34284169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):47, 121

               
               
               Conread position:66-386
               
               
               Cow position:chr15:48487040-48486723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:66-478
               
               
               Cow position:chr15:48403742-48404143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:267
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):310, 156

               
               
               Conread position:66-597
               
               
               Cow position:chr15:19186213-19186742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 43

               
               
               Conread position:66-600
               
               
               Cow position:chr15:22938931-22939448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 77

               
               
               Conread position:67-294
               
               
               Cow position:chr15:27759169-27759395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):156, 13

               
               
               Conread position:67-296
               
               
               Cow position:chr15:3010674-3010905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):144, 212

               
               
               Conread position:67-424
               
               
               Cow position:chr15:44256881-44256529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 199

               
               
               Conread position:68-423
               
               
               Cow position:chr15:44613839-44613485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):155, 211

               
               
               Conread position:69-156
               
               
               Cow position:chr15:38210394-38210307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-267
               
               
               Cow position:chr15:25618180-25618375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:69-298
               
               
               Cow position:chr15:30316184-30316417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:70-316
               
               
               Cow position:chr15:29807136-29807382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):167, 207

               
               
               Conread position:71-520
               
               
               Cow position:chr15:42788763-42789193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 76

               
               
               Conread position:72-214
               
               
               Cow position:chr15:20279123-20278985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:72-214
               
               
               Cow position:chr15:20285722-20285584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:72-270
               
               
               Cow position:chr15:2898699-2898497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:72-316
               
               
               Cow position:chr15:9428730-9428976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):166, 150

               
               
               Conread position:72-568
               
               
               Cow position:chr15:8962396-8961933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 35

               
               
               Conread position:73-502
               
               
               Cow position:chr15:41418413-41418856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 176

               
               
               Conread position:74-350
               
               
               Cow position:chr15:37964939-37964653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:74-480
               
               
               Cow position:chr15:44252759-44252359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:74-526
               
               
               Cow position:chr15:20482438-20482898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 302

               
               
               Conread position:74-593
               
               
               Cow position:chr15:44377657-44377157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:324
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:75-263
               
               
               Cow position:chr15:132064-132259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:75-291
               
               
               Cow position:chr15:43757362-43757579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 211

               
               
               Conread position:75-350
               
               
               Cow position:chr15:28463911-28464186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:75-474
               
               
               Cow position:chr15:10570230-10570613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):267, 47

               
               
               Conread position:75-582
               
               
               Cow position:chr15:5420508-5420987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:349
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):149, 36

               
               
               Conread position:76-417
               
               
               Cow position:chr15:52739729-52740067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 86

               
               
               Conread position:77-220
               
               
               Cow position:chr15:28242534-28242677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:77-270
               
               
               Cow position:chr15:37238266-37238075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:77-598
               
               
               Cow position:chr15:23801661-23802191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:336
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:78-232
               
               
               Cow position:chr15:2620054-2619903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:79-363
               
               
               Cow position:chr15:23100862-23101146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):144, 14

               
               
               Conread position:80-234
               
               
               Cow position:chr15:44363686-44363532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-296
               
               
               Cow position:chr15:29024994-29024777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):128, 198

               
               
               Conread position:83-593
               
               
               Cow position:chr15:24129035-24128547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 34

               
               
               Conread position:85-270
               
               
               Cow position:chr15:53084820-53084633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):126, 94

               
               
               Conread position:86-330
               
               
               Cow position:chr15:2993975-2993730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:87-225
               
               
               Cow position:chr15:20046577-20046713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 56

               
               
               Conread position:87-269
               
               
               Cow position:chr15:9177827-9178008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 151

               
               
               Conread position:87-273
               
               
               Cow position:chr15:13634331-13634137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:87-295
               
               
               Cow position:chr15:36386570-36386771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:87-400
               
               
               Cow position:chr15:6045931-6046240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 21

               
               
               Conread position:88-237
               
               
               Cow position:chr15:2500259-2500112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:88-391
               
               
               Cow position:chr15:53402619-53402906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 60

               
               
               Conread position:88-423
               
               
               Cow position:chr15:2615566-2615232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):135, 11

               
               
               Conread position:88-572
               
               
               Cow position:chr15:38806116-38806599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 58

               
               
               Conread position:89-193
               
               
               Cow position:chr15:13092854-13092958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-296
               
               
               Cow position:chr15:26191690-26191899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 190

               
               
               Conread position:89-315
               
               
               Cow position:chr15:9512454-9512226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):134, 190

               
               
               Conread position:89-416
               
               
               Cow position:chr15:24602793-24602467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):134, 190

               
               
               Conread position:90-263
               
               
               Cow position:chr15:4103754-4103577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:90-489
               
               
               Cow position:chr15:26404650-26404269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):392, 119

               
               
               Conread position:91-262
               
               
               Cow position:chr15:102941-103110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):124, 16

               
               
               Conread position:91-338
               
               
               Cow position:chr15:51831211-51831465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 190

               
               
               Conread position:91-400
               
               
               Cow position:chr15:28126669-28126969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 146

               
               
               Conread position:91-503
               
               
               Cow position:chr15:16307796-16307393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 189

               
               
               Conread position:92-416
               
               
               Cow position:chr15:10615363-10615675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):69, 5

               
               
               Conread position:93-358
               
               
               Cow position:chr15:1702067-1701796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):83, 79

               
               
               Conread position:93-558
               
               
               Cow position:chr15:40423271-40423712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 184

               
               
               Conread position:93-594
               
               
               Cow position:chr15:36621797-36621285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 148

               
               
               Conread position:94-568
               
               
               Cow position:chr15:17417575-17418056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:325
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):117, 44

               
               
               Conread position:95-269
               
               
               Cow position:chr15:10487521-10487698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:95-279
               
               
               Cow position:chr15:36854350-36854538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:96-234
               
               
               Cow position:chr15:10612082-10611944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-479
               
               
               Cow position:chr15:35417247-35417628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:97-296
               
               
               Cow position:chr15:49559849-49560050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):114, 182

               
               
               Conread position:97-306
               
               
               Cow position:chr15:8978774-8978569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 131

               
               
               Conread position:97-588
               
               
               Cow position:chr15:39599813-39599339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:98-296
               
               
               Cow position:chr15:31460325-31460125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):137, 183

               
               
               Conread position:99-205
               
               
               Cow position:chr15:22872445-22872342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:100-572
               
               
               Cow position:chr15:31283739-31283288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 165

               
               
               Conread position:100-588
               
               
               Cow position:chr15:18322561-18323057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:101-228
               
               
               Cow position:chr15:1857954-1858081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:101-270
               
               
               Cow position:chr15:27965966-27965796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 165

               
               
               Conread position:101-317
               
               
               Cow position:chr15:19397457-19397672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 143

               
               
               Conread position:101-439
               
               
               Cow position:chr15:16449074-16448720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 78

               
               
               Conread position:101-515
               
               
               Cow position:chr15:52454815-52454391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 168

               
               
               Conread position:101-533
               
               
               Cow position:chr15:51898595-51898170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:101-611
               
               
               Cow position:chr15:24941016-24941494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 106

               
               
               Conread position:102-346
               
               
               Cow position:chr15:11362809-11363053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:102-400
               
               
               Cow position:chr15:20725248-20725540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:102-457
               
               
               Cow position:chr15:15846202-15845858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):114, 176

               
               
               Conread position:102-504
               
               
               Cow position:chr15:30985912-30986326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 130

               
               
               Conread position:102-506
               
               
               Cow position:chr15:41792640-41792229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):57, 45

               
               
               Conread position:104-588
               
               
               Cow position:chr15:48851131-48851603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:105-418
               
               
               Cow position:chr15:29340429-29340121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 106

               
               
               Conread position:105-423
               
               
               Cow position:chr15:51765569-51765254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):118, 174

               
               
               Conread position:105-588
               
               
               Cow position:chr15:36259225-36259707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 181

               
               
               Conread position:105-594
               
               
               Cow position:chr15:44051133-44051597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:333
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:105-596
               
               
               Cow position:chr15:5984241-5984705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 7

               
               
               Conread position:107-268
               
               
               Cow position:chr15:50059199-50059363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:107-351
               
               
               Cow position:chr15:7827674-7827918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:108-268
               
               
               Cow position:chr15:53265783-53265943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 141

               
               
               Conread position:108-582
               
               
               Cow position:chr15:22553158-22553645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 190

               
               
               Conread position:108-596
               
               
               Cow position:chr15:43913721-43914216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 175

               
               
               Conread position:109-594
               
               
               Cow position:chr15:51427460-51427942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 140

               
               
               Conread position:110-296
               
               
               Cow position:chr15:50547828-50548016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:110-454
               
               
               Cow position:chr15:24297872-24298216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 83

               
               
               Conread position:110-491
               
               
               Cow position:chr15:4093564-4093949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):112, 37

               
               
               Conread position:112-296
               
               
               Cow position:chr15:11656613-11656427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):99, 157

               
               
               Conread position:113-319
               
               
               Cow position:chr15:241206-240996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):33, 170

               
               
               Conread position:113-414
               
               
               Cow position:chr15:14856126-14856405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:113-591
               
               
               Cow position:chr15:21365842-21366303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 34

               
               
               Conread position:113-596
               
               
               Cow position:chr15:28140714-28141193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):110, 156

               
               
               Conread position:114-235
               
               
               Cow position:chr15:169961-169844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:114-269
               
               
               Cow position:chr15:12809569-12809728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:114-316
               
               
               Cow position:chr15:52154431-52154635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 141

               
               
               Conread position:114-325
               
               
               Cow position:chr15:14259579-14259778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):180, 19

               
               
               Conread position:114-400
               
               
               Cow position:chr15:40009293-40009578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 152

               
               
               Conread position:114-474
               
               
               Cow position:chr15:9928713-9928361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):212, 33

               
               
               Conread position:114-478
               
               
               Cow position:chr15:6421990-6421631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:114-478
               
               
               Cow position:chr15:12553966-12554328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 130

               
               
               Conread position:114-479
               
               
               Cow position:chr15:40343607-40343245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):166, 102

               
               
               Conread position:114-482
               
               
               Cow position:chr15:6657462-6657093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 33

               
               
               Conread position:114-485
               
               
               Cow position:chr15:8230223-8230576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:114-516
               
               
               Cow position:chr15:1298093-1297700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 39

               
               
               Conread position:114-588
               
               
               Cow position:chr15:33303690-33303198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 76

               
               
               Conread position:114-600
               
               
               Cow position:chr15:11011252-11011715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):231, 101

               
               
               Conread position:114-605
               
               
               Cow position:chr15:16927727-16928218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 33

               
               
               Conread position:114-612
               
               
               Cow position:chr15:16823293-16822818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:115-212
               
               
               Cow position:chr15:286814-286718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:115-270
               
               
               Cow position:chr15:53231821-53231669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:115-275
               
               
               Cow position:chr15:2669259-2669095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 32

               
               
               Conread position:115-342
               
               
               Cow position:chr15:33679050-33678832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):219, 32

               
               
               Conread position:115-344
               
               
               Cow position:chr15:14020827-14020599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):210, 74

               
               
               Conread position:115-365
               
               
               Cow position:chr15:23791813-23791560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):209, 115

               
               
               Conread position:115-393
               
               
               Cow position:chr15:4535263-4534988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 121

               
               
               Conread position:115-400
               
               
               Cow position:chr15:37632519-37632808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 155

               
               
               Conread position:115-400
               
               
               Cow position:chr15:45323139-45322857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 41

               
               
               Conread position:115-447
               
               
               Cow position:chr15:31616648-31616978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:115-484
               
               
               Cow position:chr15:23767909-23768265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 100

               
               
               Conread position:115-514
               
               
               Cow position:chr15:32287402-32287779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):208, 92

               
               
               Conread position:115-571
               
               
               Cow position:chr15:38883513-38883049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 155

               
               
               Conread position:115-582
               
               
               Cow position:chr15:24994172-24994615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 24

               
               
               Conread position:115-582
               
               
               Cow position:chr15:41310719-41311172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):159, 101

               
               
               Conread position:115-600
               
               
               Cow position:chr15:40957935-40957458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 152

               
               
               Conread position:115-607
               
               
               Cow position:chr15:17100360-17100835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 32

               
               
               Conread position:116-335
               
               
               Cow position:chr15:33525783-33525553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:116-368
               
               
               Cow position:chr15:44797880-44797632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:116-496
               
               
               Cow position:chr15:15573467-15573856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:117-374
               
               
               Cow position:chr15:12316278-12316025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 148

               
               
               Conread position:117-392
               
               
               Cow position:chr15:13846221-13846511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):10, 122

               
               
               Conread position:117-396
               
               
               Cow position:chr15:36781982-36782245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):213, 25

               
               
               Conread position:117-396
               
               
               Cow position:chr15:37931415-37931684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):209, 103

               
               
               Conread position:117-450
               
               
               Cow position:chr15:41619832-41620164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 156

               
               
               Conread position:117-558
               
               
               Cow position:chr15:12785790-12785347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 211

               
               
               Conread position:117-569
               
               
               Cow position:chr15:2952776-2953224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 30

               
               
               Conread position:117-679
               
               
               Cow position:chr15:27972861-27973411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 162

               
               
               Conread position:118-478
               
               
               Cow position:chr15:26701720-26702075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 158

               
               
               Conread position:118-599
               
               
               Cow position:chr15:3494145-3493660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:313
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 163

               
               
               Conread position:118-611
               
               
               Cow position:chr15:21941496-21941980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:119-582
               
               
               Cow position:chr15:21894134-21893676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 147

               
               
               Conread position:120-474
               
               
               Cow position:chr15:5730288-5729943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):197, 90

               
               
               Conread position:120-497
               
               
               Cow position:chr15:12170589-12170222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 38

               
               
               Conread position:120-514
               
               
               Cow position:chr15:34140331-34139942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:120-587
               
               
               Cow position:chr15:50341459-50341009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):205, 27

               
               
               Conread position:120-597
               
               
               Cow position:chr15:22532012-22531554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:121-267
               
               
               Cow position:chr15:13593-13739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:122-303
               
               
               Cow position:chr15:12063679-12063498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 124

               
               
               Conread position:122-414
               
               
               Cow position:chr15:12163163-12163460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:122-588
               
               
               Cow position:chr15:5683483-5683027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:328
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):156, 94

               
               
               Conread position:123-247
               
               
               Cow position:chr15:26922632-26922757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:123-248
               
               
               Cow position:chr15:38936046-38935922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:123-270
               
               
               Cow position:chr15:29861708-29861559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:123-289
               
               
               Cow position:chr15:28450240-28450071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):93, 84

               
               
               Conread position:123-588
               
               
               Cow position:chr15:6462154-6462603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 117

               
               
               Conread position:123-596
               
               
               Cow position:chr15:35642368-35641894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 155

               
               
               Conread position:123-598
               
               
               Cow position:chr15:11658217-11658703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 146

               
               
               Conread position:123-598
               
               
               Cow position:chr15:19771475-19771016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:124-354
               
               
               Cow position:chr15:19279751-19279970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):200, 14

               
               
               Conread position:124-502
               
               
               Cow position:chr15:22137030-22136663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 149

               
               
               Conread position:124-595
               
               
               Cow position:chr15:12723425-12722967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 38

               
               
               Conread position:124-596
               
               
               Cow position:chr15:39406081-39405624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:125-400
               
               
               Cow position:chr15:15215366-15215092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):159, 140

               
               
               Conread position:125-486
               
               
               Cow position:chr15:21837035-21836674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):146, 89

               
               
               Conread position:125-575
               
               
               Cow position:chr15:21803311-21803762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):98, 119

               
               
               Conread position:125-595
               
               
               Cow position:chr15:34479029-34478570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:126-362
               
               
               Cow position:chr15:3572359-3572593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):144, 81

               
               
               Conread position:127-317
               
               
               Cow position:chr15:39969652-39969846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 156

               
               
               Conread position:127-407
               
               
               Cow position:chr15:6586369-6586648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 140

               
               
               Conread position:127-514
               
               
               Cow position:chr15:2144788-2145178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:128-514
               
               
               Cow position:chr15:29604374-29604739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):205, 76

               
               
               Conread position:129-517
               
               
               Cow position:chr15:16476402-16476774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:129-594
               
               
               Cow position:chr15:8665240-8665722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 479

               
               
               Conread position:130-543
               
               
               Cow position:chr15:39621679-39621266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 80

               
               
               Conread position:131-290
               
               
               Cow position:chr15:10284034-10283874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):139, 108

               
               
               Conread position:131-409
               
               
               Cow position:chr15:31545009-31545282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):80, 105

               
               
               Conread position:131-588
               
               
               Cow position:chr15:29810449-29810015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 109

               
               
               Conread position:132-286
               
               
               Cow position:chr15:15738687-15738534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):138, 21

               
               
               Conread position:132-608
               
               
               Cow position:chr15:10245670-10246125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 15

               
               
               Conread position:133-575
               
               
               Cow position:chr15:31857930-31857492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:134-393
               
               
               Cow position:chr15:21523127-21522869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 134

               
               
               Conread position:135-594
               
               
               Cow position:chr15:14740334-14740804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 222

               
               
               Conread position:136-578
               
               
               Cow position:chr15:30002024-30001596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:137-324
               
               
               Cow position:chr15:26158284-26158467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:137-442
               
               
               Cow position:chr15:40095176-40095480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):74, 145

               
               
               Conread position:138-270
               
               
               Cow position:chr15:36787641-36787505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:138-605
               
               
               Cow position:chr15:21421274-21420819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 9

               
               
               Conread position:139-417
               
               
               Cow position:chr15:5633004-5632745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):185, 82

               
               
               Conread position:139-474
               
               
               Cow position:chr15:24128352-24128033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:140-349
               
               
               Cow position:chr15:45217152-45216942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:140-401
               
               
               Cow position:chr15:4501311-4501061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 144

               
               
               Conread position:142-325
               
               
               Cow position:chr15:52683498-52683318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:142-393
               
               
               Cow position:chr15:11629553-11629803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:142-409
               
               
               Cow position:chr15:47105365-47105108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 5

               
               
               Conread position:143-575
               
               
               Cow position:chr15:35112560-35112970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):137, 72

               
               
               Conread position:143-588
               
               
               Cow position:chr15:22938449-22938877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 90

               
               
               Conread position:144-570
               
               
               Cow position:chr15:38394747-38394335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 139

               
               
               Conread position:144-608
               
               
               Cow position:chr15:12304968-12304506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 121

               
               
               Conread position:144-617
               
               
               Cow position:chr15:49922466-49921998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 11

               
               
               Conread position:147-569
               
               
               Cow position:chr15:17763224-17762817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):180, 59

               
               
               Conread position:147-577
               
               
               Cow position:chr15:26903519-26903094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:147-588
               
               
               Cow position:chr15:50322919-50322501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 118

               
               
               Conread position:148-314
               
               
               Cow position:chr15:33243481-33243305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:148-524
               
               
               Cow position:chr15:26573711-26573331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:149-629
               
               
               Cow position:chr15:39598560-39598099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 56

               
               
               Conread position:152-350
               
               
               Cow position:chr15:15025723-15025528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:152-588
               
               
               Cow position:chr15:11995706-11996138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 64

               
               
               Conread position:152-591
               
               
               Cow position:chr15:10088633-10088206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 55

               
               
               Conread position:153-278
               
               
               Cow position:chr15:43673590-43673718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:155-325
               
               
               Cow position:chr15:43765850-43765676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 129

               
               
               Conread position:155-587
               
               
               Cow position:chr15:20082076-20081665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:157-401
               
               
               Cow position:chr15:10846036-10845794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 122

               
               
               Conread position:158-588
               
               
               Cow position:chr15:14576633-14576220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 67

               
               
               Conread position:161-596
               
               
               Cow position:chr15:27900194-27900623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:161-598
               
               
               Cow position:chr15:47843797-47844208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:162-346
               
               
               Cow position:chr15:36347078-36346884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 124

               
               
               Conread position:165-596
               
               
               Cow position:chr15:8007287-8006860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:166-478
               
               
               Cow position:chr15:26637967-26637657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:166-610
               
               
               Cow position:chr15:225498-225936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:166-617
               
               
               Cow position:chr15:6168210-6168673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 117

               
               
               Conread position:167-600
               
               
               Cow position:chr15:44658664-44658244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:168-400
               
               
               Cow position:chr15:37777654-37777426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):157, 11

               
               
               Conread position:168-598
               
               
               Cow position:chr15:17353347-17353781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):151, 63

               
               
               Conread position:169-418
               
               
               Cow position:chr15:24305176-24305424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:169-584
               
               
               Cow position:chr15:9622494-9622072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:170-598
               
               
               Cow position:chr15:26918972-26919389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:171-433
               
               
               Cow position:chr15:11646189-11646449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):154, 17

               
               
               Conread position:172-354
               
               
               Cow position:chr15:5071801-5071981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):153, 103

               
               
               Conread position:174-569
               
               
               Cow position:chr15:1804031-1804424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 182

               
               
               Conread position:174-613
               
               
               Cow position:chr15:23115132-23114698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 39

               
               
               Conread position:175-460
               
               
               Cow position:chr15:9526172-9526462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:176-603
               
               
               Cow position:chr15:23696622-23697031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 40

               
               
               Conread position:178-401
               
               
               Cow position:chr15:34144862-34145079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):149, 87

               
               
               Conread position:179-516
               
               
               Cow position:chr15:2141003-2141344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:180-399
               
               
               Cow position:chr15:4350309-4350526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:180-479
               
               
               Cow position:chr15:39436503-39436215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):147, 56

               
               
               Conread position:180-582
               
               
               Cow position:chr15:16667208-16667602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:180-597
               
               
               Cow position:chr15:39373138-39373574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 99

               
               
               Conread position:180-598
               
               
               Cow position:chr15:21821629-21822047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:181-568
               
               
               Cow position:chr15:33643376-33643001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):198, 47

               
               
               Conread position:182-592
               
               
               Cow position:chr15:8610029-8610448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:183-521
               
               
               Cow position:chr15:36773406-36773739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:184-604
               
               
               Cow position:chr15:31137174-31137589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:186-582
               
               
               Cow position:chr15:45585010-45584618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:186-596
               
               
               Cow position:chr15:16439540-16439952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:187-574
               
               
               Cow position:chr15:39619442-39619046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:188-582
               
               
               Cow position:chr15:245057-244678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):176, 47

               
               
               Conread position:189-582
               
               
               Cow position:chr15:36888102-36887735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:189-596
               
               
               Cow position:chr15:4861628-4862025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 98

               
               
               Conread position:190-440
               
               
               Cow position:chr15:38877022-38877268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:190-582
               
               
               Cow position:chr15:41045686-41045298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:193-597
               
               
               Cow position:chr15:23275812-23275410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:197-587
               
               
               Cow position:chr15:32323931-32324317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 85

               
               
               Conread position:198-582
               
               
               Cow position:chr15:84974-85350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:201-573
               
               
               Cow position:chr15:21582649-21583022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:203-588
               
               
               Cow position:chr15:16657760-16657361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:203-596
               
               
               Cow position:chr15:32242246-32241853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:204-596
               
               
               Cow position:chr15:11560248-11560633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:206-521
               
               
               Cow position:chr15:39316570-39316888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 72

               
               
               Conread position:207-484
               
               
               Cow position:chr15:20046560-20046291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 7

               
               
               Conread position:207-595
               
               
               Cow position:chr15:5444243-5443864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):171, 7

               
               
               Conread position:207-598
               
               
               Cow position:chr15:23572415-23572809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 155

               
               
               Conread position:211-417
               
               
               Cow position:chr15:12441565-12441766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:212-591
               
               
               Cow position:chr15:18975507-18975876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):115, 70

               
               
               Conread position:212-605
               
               
               Cow position:chr15:275902-275514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):166, 53

               
               
               Conread position:213-591
               
               
               Cow position:chr15:38838004-38837631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 51

               
               
               Conread position:216-521
               
               
               Cow position:chr15:22871861-22871568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):157, 58

               
               
               Conread position:216-593
               
               
               Cow position:chr15:18671199-18671564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:216-615
               
               
               Cow position:chr15:4296019-4295623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:217-550
               
               
               Cow position:chr15:25386696-25386366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 63

               
               
               Conread position:218-522
               
               
               Cow position:chr15:10608053-10608352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:219-575
               
               
               Cow position:chr15:11559105-11559449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:223-598
               
               
               Cow position:chr15:5726572-5726195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:225-574
               
               
               Cow position:chr15:8354289-8353945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:226-605
               
               
               Cow position:chr15:16018279-16017906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):98, 39

               
               
               Conread position:227-554
               
               
               Cow position:chr15:50265246-50265564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:230-596
               
               
               Cow position:chr15:286719-286353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:230-596
               
               
               Cow position:chr15:22930099-22930468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:230-609
               
               
               Cow position:chr15:38036698-38037079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:232-550
               
               
               Cow position:chr15:10512032-10512341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:244-521
               
               
               Cow position:chr15:29331230-29330960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:244-591
               
               
               Cow position:chr15:31928669-31929011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:244-594
               
               
               Cow position:chr15:53716659-53716319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:244-600
               
               
               Cow position:chr15:49274178-49273839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:244-608
               
               
               Cow position:chr15:36353895-36353537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:245-593
               
               
               Cow position:chr15:1857953-1857611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:245-595
               
               
               Cow position:chr15:11987183-11987527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:250-558
               
               
               Cow position:chr15:23865847-23866152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:250-588
               
               
               Cow position:chr15:5158602-5158261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:250-588
               
               
               Cow position:chr15:24804568-24804910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:251-588
               
               
               Cow position:chr15:30470750-30471089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:253-503
               
               
               Cow position:chr15:9781684-9781443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:258-488
               
               
               Cow position:chr15:39326299-39326529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:260-593
               
               
               Cow position:chr15:5717921-5717604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:263-595
               
               
               Cow position:chr15:35961517-35961871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 216

               
               
               Conread position:264-504
               
               
               Cow position:chr15:28258247-28258486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:266-607
               
               
               Cow position:chr15:36636244-36635901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:268-595
               
               
               Cow position:chr15:6232811-6233132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:272-573
               
               
               Cow position:chr15:38935608-38935309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:272-594
               
               
               Cow position:chr15:23779871-23780187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:274-596
               
               
               Cow position:chr15:14474537-14474222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):213, 45

               
               
               Conread position:274-596
               
               
               Cow position:chr15:19807518-19807841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:279-584
               
               
               Cow position:chr15:11425167-11424866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:279-584
               
               
               Cow position:chr15:14888446-14888743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 83

               
               
               Conread position:279-588
               
               
               Cow position:chr15:26942614-26942313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:279-588
               
               
               Cow position:chr15:37865560-37865250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:279-595
               
               
               Cow position:chr15:36793298-36793610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:281-575
               
               
               Cow position:chr15:9465870-9465577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:282-595
               
               
               Cow position:chr15:39832782-39833096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:284-575
               
               
               Cow position:chr15:40379401-40379115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):216, 43

               
               
               Conread position:284-596
               
               
               Cow position:chr15:53217-52901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:285-575
               
               
               Cow position:chr15:36776462-36776172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:285-588
               
               
               Cow position:chr15:52317246-52316950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:286-595
               
               
               Cow position:chr15:5719621-5719923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:291-595
               
               
               Cow position:chr15:15986701-15987011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:295-541
               
               
               Cow position:chr15:14176322-14176566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:301-570
               
               
               Cow position:chr15:43851412-43851679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:301-579
               
               
               Cow position:chr15:50552356-50552635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:301-582
               
               
               Cow position:chr15:39286240-39286515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:301-596
               
               
               Cow position:chr15:27230935-27230645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:302-582
               
               
               Cow position:chr15:23901193-23901481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:305-496
               
               
               Cow position:chr15:50089152-50088959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 58

               
               
               Conread position:305-593
               
               
               Cow position:chr15:41624718-41625012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:306-599
               
               
               Cow position:chr15:14988157-14987874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:306-605
               
               
               Cow position:chr15:40231284-40230991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:308-598
               
               
               Cow position:chr15:53028540-53028242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 225

               
               
               Conread position:308-608
               
               
               Cow position:chr15:40014834-40015135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:310-588
               
               
               Cow position:chr15:41053603-41053881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:318-608
               
               
               Cow position:chr15:11613937-11614225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):174, 49

               
               
               Conread position:324-593
               
               
               Cow position:chr15:42888691-42888950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:324-595
               
               
               Cow position:chr15:25571661-25571929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:324-598
               
               
               Cow position:chr15:9979252-9978983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:324-599
               
               
               Cow position:chr15:43114575-43114836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:326-568
               
               
               Cow position:chr15:40947227-40947467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:327-596
               
               
               Cow position:chr15:31416021-31416289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:332-597
               
               
               Cow position:chr15:36952061-36952318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):150, 20

               
               
               Conread position:332-609
               
               
               Cow position:chr15:38862237-38861968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:336-600
               
               
               Cow position:chr15:8128055-8127785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:338-614
               
               
               Cow position:chr15:9879238-9879514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 222

               
               
               Conread position:339-588
               
               
               Cow position:chr15:13395683-13395438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:342-559
               
               
               Cow position:chr15:864313-864099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:348-550
               
               
               Cow position:chr15:12203681-12203474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:348-572
               
               
               Cow position:chr15:13554237-13554012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:348-582
               
               
               Cow position:chr15:31490935-31491173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:348-596
               
               
               Cow position:chr15:698111-697861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:349-582
               
               
               Cow position:chr15:31637430-31637191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 161

               
               
               Conread position:349-595
               
               
               Cow position:chr15:10423323-10423067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:349-596
               
               
               Cow position:chr15:50333108-50332857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:349-600
               
               
               Cow position:chr15:49483754-49483508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:349-610
               
               
               Cow position:chr15:41056076-41056339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 218

               
               
               Conread position:349-613
               
               
               Cow position:chr15:8679629-8679894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:351-595
               
               
               Cow position:chr15:31028531-31028777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:351-596
               
               
               Cow position:chr15:39299188-39299435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:352-591
               
               
               Cow position:chr15:38652476-38652716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:352-608
               
               
               Cow position:chr15:26851101-26851355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:352-626
               
               
               Cow position:chr15:19553794-19554075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:353-525
               
               
               Cow position:chr15:36388414-36388241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:353-575
               
               
               Cow position:chr15:51316194-51315969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:353-605
               
               
               Cow position:chr15:20856352-20856606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:353-608
               
               
               Cow position:chr15:50953544-50953795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:354-521
               
               
               Cow position:chr15:40368413-40368244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:355-574
               
               
               Cow position:chr15:13701647-13701868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:355-579
               
               
               Cow position:chr15:8766673-8766898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:355-597
               
               
               Cow position:chr15:8444591-8444353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:356-521
               
               
               Cow position:chr15:25650293-25650456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:357-568
               
               
               Cow position:chr15:6102043-6102251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:358-620
               
               
               Cow position:chr15:49132178-49131917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 144

               
               
               Conread position:360-588
               
               
               Cow position:chr15:29541994-29541755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:360-588
               
               
               Cow position:chr15:40490028-40490255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):134, 13

               
               
               Conread position:360-594
               
               
               Cow position:chr15:15177433-15177201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:360-595
               
               
               Cow position:chr15:18718341-18718580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:360-598
               
               
               Cow position:chr15:31495107-31495338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 146

               
               
               Conread position:360-605
               
               
               Cow position:chr15:37970929-37970676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:360-611
               
               
               Cow position:chr15:8464013-8464266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:361-576
               
               
               Cow position:chr15:27063405-27063615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 146

               
               
               Conread position:361-596
               
               
               Cow position:chr15:42381044-42380810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):19, 201

               
               
               Conread position:362-588
               
               
               Cow position:chr15:7750796-7751024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 168

               
               
               Conread position:363-570
               
               
               Cow position:chr15:31542355-31542148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:363-598
               
               
               Cow position:chr15:18073833-18073598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):15, 194

               
               
               Conread position:364-578
               
               
               Cow position:chr15:15738500-15738283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:365-585
               
               
               Cow position:chr15:26442327-26442107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):13, 145

               
               
               Conread position:368-588
               
               
               Cow position:chr15:39473826-39474045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):5, 61

               
               
               Conread position:373-578
               
               
               Cow position:chr15:9062469-9062674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:373-596
               
               
               Cow position:chr15:22443885-22444105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 46

               
               
               Conread position:374-588
               
               
               Cow position:chr15:19002174-19002393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:374-595
               
               
               Cow position:chr15:16271555-16271331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:374-608
               
               
               Cow position:chr15:7478894-7479127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):112, 202

               
               
               Conread position:377-588
               
               
               Cow position:chr15:2931467-2931681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:377-591
               
               
               Cow position:chr15:44401860-44402063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:377-595
               
               
               Cow position:chr15:16530669-16530889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:377-610
               
               
               Cow position:chr15:31614040-31613805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):206, 79

               
               
               Conread position:378-594
               
               
               Cow position:chr15:7955974-7956199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 149

               
               
               Conread position:379-587
               
               
               Cow position:chr15:12045439-12045650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:379-594
               
               
               Cow position:chr15:38420456-38420671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 44

               
               
               Conread position:383-570
               
               
               Cow position:chr15:4886198-4886011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 153

               
               
               Conread position:383-582
               
               
               Cow position:chr15:21362862-21363057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:383-584
               
               
               Cow position:chr15:22124697-22124902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:383-598
               
               
               Cow position:chr15:34223959-34223743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 126

               
               
               Conread position:384-598
               
               
               Cow position:chr15:22321234-22321021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 49

               
               
               Conread position:385-593
               
               
               Cow position:chr15:25595437-25595642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):103, 115

               
               
               Conread position:385-600
               
               
               Cow position:chr15:44977907-44977689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:386-595
               
               
               Cow position:chr15:42704889-42704679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 78

               
               
               Conread position:386-610
               
               
               Cow position:chr15:25877532-25877309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):115, 175

               
               
               Conread position:388-596
               
               
               Cow position:chr15:6082509-6082718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:388-608
               
               
               Cow position:chr15:28099200-28098984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:388-608
               
               
               Cow position:chr15:34552801-34553023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:389-595
               
               
               Cow position:chr15:5626947-5627154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:390-587
               
               
               Cow position:chr15:4500789-4500589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:390-593
               
               
               Cow position:chr15:29928054-29927849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:390-605
               
               
               Cow position:chr15:37069800-37070015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:391-588
               
               
               Cow position:chr15:25358320-25358123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:395-596
               
               
               Cow position:chr15:44119390-44119587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:398-608
               
               
               Cow position:chr15:7916484-7916695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:403-588
               
               
               Cow position:chr15:20566987-20566807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:405-600
               
               
               Cow position:chr15:26618010-26617813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:411-609
               
               
               Cow position:chr15:40844554-40844754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:412-600
               
               
               Cow position:chr15:11908883-11909069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 59

               
               
               Conread position:418-596
               
               
               Cow position:chr15:20566189-20566010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:421-607
               
               
               Cow position:chr15:4284429-4284242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:422-575
               
               
               Cow position:chr15:16644732-16644885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:423-588
               
               
               Cow position:chr15:11320744-11320912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:423-588
               
               
               Cow position:chr15:21943108-21942942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:423-593
               
               
               Cow position:chr15:15680788-15680959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:423-593
               
               
               Cow position:chr15:21710055-21710224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:423-596
               
               
               Cow position:chr15:19976604-19976429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:423-600
               
               
               Cow position:chr15:848696-848524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:423-611
               
               
               Cow position:chr15:45133887-45134077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:425-558
               
               
               Cow position:chr15:32300429-32300294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:428-582
               
               
               Cow position:chr15:12913450-12913603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:428-588
               
               
               Cow position:chr15:33729941-33729775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:428-595
               
               
               Cow position:chr15:840100-840264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:428-595
               
               
               Cow position:chr15:25846121-25845954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:428-601
               
               
               Cow position:chr15:16415345-16415172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:428-603
               
               
               Cow position:chr15:30956275-30956451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 71

               
               
               Conread position:428-608
               
               
               Cow position:chr15:36605172-36605353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:431-603
               
               
               Cow position:chr15:27657150-27656976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:433-586
               
               
               Cow position:chr15:43020586-43020748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:435-588
               
               
               Cow position:chr15:27975830-27975983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 143

               
               
               Conread position:435-593
               
               
               Cow position:chr15:6332423-6332577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 99

               
               
               Conread position:435-598
               
               
               Cow position:chr15:14760596-14760760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:435-608
               
               
               Cow position:chr15:26380703-26380877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:437-598
               
               
               Cow position:chr15:20905993-20906150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:438-617
               
               
               Cow position:chr15:38228175-38227998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:439-586
               
               
               Cow position:chr15:27280676-27280529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:440-608
               
               
               Cow position:chr15:33784789-33784954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:441-605
               
               
               Cow position:chr15:241910-242067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:443-608
               
               
               Cow position:chr15:16072695-16072861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:456-597
               
               
               Cow position:chr15:36539964-36539825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:459-598
               
               
               Cow position:chr15:36846167-36846306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 132

               
               
               Conread position:461-596
               
               
               Cow position:chr15:36904321-36904184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 0
Show alignments to all cow chromosomes.