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Cow genome map

           
Conread name:
           
Ss1.1-Lng1-LNG010008H04.5
        

               
Conread position:
               
1-103
               

               
Cow position:
               
chr27:27469393-27469494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-114
               

               
Cow position:
               
chr27:24224249-24224361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-119
               

               
Cow position:
               
chr27:19647325-19647438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr27:263622-263743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr27:344098-343977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr27:7648198-7648321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr27:8048351-8048476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
113, 33
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr27:11470365-11470491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr27:20000981-20000858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr27:6320474-6320599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr27:25800376-25800251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr27:27240062-27240191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr27:20554288-20554155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr27:3652865-3652734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr27:19146519-19146652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr27:26367026-26367159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr27:27002546-27002682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr27:29830157-29830289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr27:24055532-24055671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr27:12001292-12001428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr27:22772015-22772152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 37
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr27:13878034-13878182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr27:8201771-8201919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr27:20799246-20799397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr27:21297236-21297084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr27:1768948-1769101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr27:14381271-14381423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-156
               

               
Cow position:
               
chr27:15643744-15643898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr27:11355907-11356059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr27:23148192-23148354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
1-169
               

               
Cow position:
               
chr27:26087558-26087398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 30
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr27:27606009-27606191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr27:15408085-15408268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr27:10085529-10085716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
173, 36
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr27:17925985-17926178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr27:9262438-9262243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr27:27292517-27292715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr27:27896911-27897112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr27:1906405-1906196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr27:11634313-11634101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr27:23502797-23502585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr27:12191113-12191340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr27:22107926-22108152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
208, 15
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr27:27931098-27931318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
209, 37
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr27:29341208-29341445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
120, 33
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr27:5853581-5853813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 37
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr27:16984123-16983893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr27:20749705-20749935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr27:28146313-28146544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr27:24295426-24295196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:834208-834441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:1521514-1521747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:2429899-2430132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:3239676-3239909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:8959182-8958949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:11417556-11417789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:26463550-26463783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:29797071-29797304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr27:30306442-30306209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr27:13273673-13273913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr27:427455-427218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr27:17645862-17646108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 36
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr27:4330917-4330676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
218, 36
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr27:23595606-23595364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr27:23511455-23511201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 33
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr27:28106800-28107062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr27:12282517-12282795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
120, 36
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr27:30518997-30518746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr27:1675706-1675437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr27:30749050-30748787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
232, 38
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr27:9371836-9371573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
163, 36
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr27:11723566-11723839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr27:21246741-21246477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr27:25982380-25982641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
211, 33
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr27:30561252-30560982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr27:16785097-16784824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr27:27867349-27867626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr27:13901958-13902232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
216, 36
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr27:13895528-13895804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr27:26598211-26597937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr27:264582-264306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 37
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr27:26161841-26161555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr27:12261710-12261447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
54, 36
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr27:26313865-26314145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 37
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr27:27501999-27502290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 33
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr27:26545588-26545876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 16
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr27:10384266-10384561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 39
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr27:26330732-26331031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:1294082-1294369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:2900142-2899856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:5836664-5836958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:11403244-11402960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:14530508-14530804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 36
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:16305444-16305730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:20372492-20372787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:21349412-21349702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr27:29812135-29812426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr27:1189477-1189771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr27:9045997-9045698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr27:18922786-18922493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr27:20629364-20629072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr27:15100474-15100788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr27:27521668-27521982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr27:3340124-3339808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr27:9989043-9988726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 37
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr27:16030563-16030249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 33
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr27:16045565-16045876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
252, 36
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr27:25970845-25970532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr27:27630405-27630721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr27:10579778-10580090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
222, 30
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr27:13442502-13442827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
116, 38
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr27:17763757-17763447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr27:6674571-6674266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr27:16260630-16260939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr27:11413051-11412735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr27:22255223-22254897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr27:17476379-17476067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
295, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr27:1030719-1030396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr27:5861541-5861212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
147, 36
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr27:12097931-12097605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
237, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr27:14298024-14298349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr27:15312534-15312216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
229, 33
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr27:19299731-19299405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 33
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr27:8973280-8973613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr27:26091068-26091391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
204, 21
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr27:16292730-16292404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
148, 36
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr27:25791148-25790792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 33
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr27:15319786-15319439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
205, 22
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr27:23454814-23455167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 33
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr27:6523391-6523022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr27:9090465-9090822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr27:13182466-13182119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 33
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr27:30856066-30856410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr27:15033057-15032693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr27:15644121-15644488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr27:15349466-15349858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr27:4819375-4819746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr27:4829479-4829845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 33
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr27:27449101-27449468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 33
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr27:22330324-22330720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr27:29515525-29515899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr27:23070027-23070413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr27:2298748-2298348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 36
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr27:16238232-16237851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 37
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr27:4769150-4769560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr27:29446270-29445860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
222, 22
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr27:13198241-13197831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr27:526744-527159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr27:732899-732500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 36
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr27:15178549-15178126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr27:20858953-20859361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 33
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr27:25471495-25471064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
113, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:3650317-3650737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:3690809-3690391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:8187653-8188077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 224
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:8743268-8742850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
225, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:12016676-12016258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:13422329-13421909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:18621136-18620724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
336, 33
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:31566248-31566668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr27:18446245-18446678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr27:14129839-14129405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:2332335-2332776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:2390631-2390187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:4881944-4881499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:9335025-9335467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:19423540-19423094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:19522874-19522429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 36
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr27:20811251-20811691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 36
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:2557148-2556703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 36
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:3988945-3988499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
158, 36
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:24999400-24999847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:25380333-25379881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:27728658-27728218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:27737599-27738034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
286, 15
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr27:28081981-28082433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr27:6454550-6454082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr27:26300171-26299712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
199, 36
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr27:23472584-23472124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr27:7289773-7290237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 36
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr27:11488953-11489412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
337, 36
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr27:12239980-12240454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 36
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr27:20549348-20549857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr27:13409830-13410308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
1-496
               

               
Cow position:
               
chr27:10992703-10992203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr27:20641007-20641488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr27:21393171-21393662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 33
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr27:5990217-5989726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 36
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr27:536789-536305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
380, 33
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr27:25411179-25411669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr27:4983265-4983768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr27:5915339-5915838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
158, 39
               

               
Conread position:
               
1-506
               

               
Cow position:
               
chr27:12549445-12548939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chr27:12246981-12246488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 36
               

               
Conread position:
               
1-509
               

               
Cow position:
               
chr27:28907401-28906899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 22
               

               
Conread position:
               
1-519
               

               
Cow position:
               
chr27:4385732-4386238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
1-544
               

               
Cow position:
               
chr27:22418431-22418963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr27:1768298-1768833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
1-576
               

               
Cow position:
               
chr27:13317629-13318208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 36
               

               
Conread position:
               
1-582
               

               
Cow position:
               
chr27:13411025-13411605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 33
               

               
Conread position:
               
1-582
               

               
Cow position:
               
chr27:26984673-26984117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 10
               

               
Conread position:
               
1-584
               

               
Cow position:
               
chr27:435578-434991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 33
               

               
Conread position:
               
1-585
               

               
Cow position:
               
chr27:2900905-2901505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 36
               

               
Conread position:
               
1-587
               

               
Cow position:
               
chr27:19718255-19717656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 37
               

               
Conread position:
               
1-587
               

               
Cow position:
               
chr27:20636740-20637300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
1-587
               

               
Cow position:
               
chr27:21977801-21978385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 36
               

               
Conread position:
               
1-587
               

               
Cow position:
               
chr27:31219571-31219031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr27:815701-815091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 33
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr27:10306940-10307546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr27:10582699-10582128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 36
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr27:16182400-16181813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 36
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr27:17397118-17397694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr27:22440478-22439894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr27:24227457-24228047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 36
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr27:25809187-25809759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
1-589
               

               
Cow position:
               
chr27:26999089-26999667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 33
               

               
Conread position:
               
1-590
               

               
Cow position:
               
chr27:22603498-22602929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
480, 33
               

               
Conread position:
               
1-590
               

               
Cow position:
               
chr27:23452810-23452218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 33
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr27:15866557-15865981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 38
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr27:16787168-16786583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr27:15867723-15867143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 36
               

               
Conread position:
               
1-595
               

               
Cow position:
               
chr27:27460254-27460828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr27:15925671-15925090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr27:18558703-18558107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr27:20634785-20634208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 12
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr27:11481765-11482350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 36
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr27:14670045-14670632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr27:15315826-15315271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr27:20828371-20828957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 33
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr27:23632932-23632356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr27:29184519-29185099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
326, 36
               

               
Conread position:
               
1-599
               

               
Cow position:
               
chr27:22655041-22655647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr27:8961934-8962495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 10
               

               
Conread position:
               
1-605
               

               
Cow position:
               
chr27:11434995-11435587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr27:26433478-26434077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
1-608
               

               
Cow position:
               
chr27:30374220-30374843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
1-610
               

               
Cow position:
               
chr27:19388353-19387757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 33
               

               
Conread position:
               
1-611
               

               
Cow position:
               
chr27:15454549-15453950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 33
               

               
Conread position:
               
2-120
               

               
Cow position:
               
chr27:25277500-25277384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chr27:30572897-30573031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr27:21564991-21564757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr27:30198610-30198379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr27:31365864-31365632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr27:31371958-31372222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 32
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr27:11272934-11272671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr27:16823143-16822871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr27:22179452-22179775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chr27:16620323-16620004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 32
               

               
Conread position:
               
2-512
               

               
Cow position:
               
chr27:4673350-4672842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 32
               

               
Conread position:
               
2-575
               

               
Cow position:
               
chr27:7958500-7959061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 35
               

               
Conread position:
               
2-585
               

               
Cow position:
               
chr27:299048-299614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 35
               

               
Conread position:
               
2-588
               

               
Cow position:
               
chr27:28207127-28206561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 27
               

               
Conread position:
               
2-596
               

               
Cow position:
               
chr27:21408216-21408821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
2-600
               

               
Cow position:
               
chr27:1058348-1058935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
3-114
               

               
Cow position:
               
chr27:4389876-4389986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr27:26219269-26219145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr27:26848872-26848729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
143, 17
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr27:16241671-16241439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr27:1173209-1173480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 31
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chr27:15927106-15926834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 34
               

               
Conread position:
               
3-292
               

               
Cow position:
               
chr27:30388883-30389170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 20
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr27:9337847-9337563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr27:4719562-4719850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 20
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr27:28984607-28984926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr27:30783758-30784085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr27:30702756-30703088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
3-417
               

               
Cow position:
               
chr27:11255847-11255451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 34
               

               
Conread position:
               
3-450
               

               
Cow position:
               
chr27:30418007-30417563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 31
               

               
Conread position:
               
3-516
               

               
Cow position:
               
chr27:17473156-17472639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
3-517
               

               
Cow position:
               
chr27:8942358-8942865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 31
               

               
Conread position:
               
3-588
               

               
Cow position:
               
chr27:8629540-8630117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 34
               

               
Conread position:
               
3-588
               

               
Cow position:
               
chr27:22171633-22171059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
3-600
               

               
Cow position:
               
chr27:1353929-1353326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
3-611
               

               
Cow position:
               
chr27:26427794-26428391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 31
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr27:24115943-24116158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
151, 33
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr27:27582062-27582297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
4-354
               

               
Cow position:
               
chr27:26796312-26795967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr27:27141925-27141544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 29
               

               
Conread position:
               
4-444
               

               
Cow position:
               
chr27:21350681-21351122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
4-491
               

               
Cow position:
               
chr27:27049590-27050056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
216, 30
               

               
Conread position:
               
4-596
               

               
Cow position:
               
chr27:23128785-23128214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 19
               

               
Conread position:
               
4-598
               

               
Cow position:
               
chr27:8353797-8353243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr27:3729982-3730210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
206, 32
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr27:8589171-8589448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
5-608
               

               
Cow position:
               
chr27:15871494-15870895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 29
               

               
Conread position:
               
6-115
               

               
Cow position:
               
chr27:27631029-27631137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-152
               

               
Cow position:
               
chr27:2569930-2570075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-152
               

               
Cow position:
               
chr27:29234736-29234589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
6-155
               

               
Cow position:
               
chr27:14125428-14125576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chr27:23894174-23894401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr27:17403227-17402999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr27:24241279-24241051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr27:29374066-29373838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr27:30014744-30014972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-237
               

               
Cow position:
               
chr27:30271482-30271254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-268
               

               
Cow position:
               
chr27:491228-490957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
30, 115
               

               
Conread position:
               
6-268
               

               
Cow position:
               
chr27:523861-524126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-268
               

               
Cow position:
               
chr27:1481733-1481998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-268
               

               
Cow position:
               
chr27:20866199-20866456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
239, 31
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:5881368-5881637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
220, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:10590344-10590614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:11651410-11651140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 31
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:12147732-12148002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:12501954-12502224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:19325831-19325561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:19487144-19486874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:26015744-26015475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
223, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:26341290-26341560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr27:30684239-30683969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-316
               

               
Cow position:
               
chr27:11606046-11605741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
6-325
               

               
Cow position:
               
chr27:30677230-30676925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
274, 28
               

               
Conread position:
               
6-362
               

               
Cow position:
               
chr27:12006988-12007345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-367
               

               
Cow position:
               
chr27:25924113-25923765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 19
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr27:32632-33038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr27:18812018-18811609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr27:22796819-22796412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
205, 28
               

               
Conread position:
               
6-416
               

               
Cow position:
               
chr27:30361537-30361129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr27:651626-652039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr27:2001684-2002096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr27:26584635-26584222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 28
               

               
Conread position:
               
6-423
               

               
Cow position:
               
chr27:29035542-29035127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
239, 28
               

               
Conread position:
               
6-434
               

               
Cow position:
               
chr27:20137666-20138096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 31
               

               
Conread position:
               
6-491
               

               
Cow position:
               
chr27:1123348-1122883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 29
               

               
Conread position:
               
6-521
               

               
Cow position:
               
chr27:6074247-6073752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 28
               

               
Conread position:
               
6-587
               

               
Cow position:
               
chr27:28018664-28018081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 17
               

               
Conread position:
               
6-591
               

               
Cow position:
               
chr27:22549456-22550016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 31
               

               
Conread position:
               
7-122
               

               
Cow position:
               
chr27:21418665-21418778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
7-123
               

               
Cow position:
               
chr27:22559409-22559293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
7-125
               

               
Cow position:
               
chr27:26631298-26631181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-155
               

               
Cow position:
               
chr27:5424056-5424203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
7-170
               

               
Cow position:
               
chr27:13430443-13430282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr27:21283404-21283199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr27:7418548-7418767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr27:30231949-30232168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-230
               

               
Cow position:
               
chr27:6292700-6292479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-251
               

               
Cow position:
               
chr27:15632725-15632483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
204, 18
               

               
Conread position:
               
7-266
               

               
Cow position:
               
chr27:19626955-19627213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
7-266
               

               
Cow position:
               
chr27:26653635-26653370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
193, 30
               

               
Conread position:
               
7-267
               

               
Cow position:
               
chr27:20066032-20066286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 30
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr27:191037-190778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
7-325
               

               
Cow position:
               
chr27:2627742-2628060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
216, 31
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr27:12231578-12231925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
7-403
               

               
Cow position:
               
chr27:26397940-26398318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 30
               

               
Conread position:
               
7-487
               

               
Cow position:
               
chr27:26785652-26786135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 30
               

               
Conread position:
               
7-503
               

               
Cow position:
               
chr27:27038511-27038998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
7-516
               

               
Cow position:
               
chr27:15272236-15271746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 30
               

               
Conread position:
               
7-521
               

               
Cow position:
               
chr27:26807236-26807743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
318, 32
               

               
Conread position:
               
7-558
               

               
Cow position:
               
chr27:30583067-30582524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
7-575
               

               
Cow position:
               
chr27:31230765-31231309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
471, 31
               

               
Conread position:
               
7-577
               

               
Cow position:
               
chr27:28276598-28276030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 16
               

               
Conread position:
               
7-584
               

               
Cow position:
               
chr27:24445826-24446376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 30
               

               
Conread position:
               
7-588
               

               
Cow position:
               
chr27:1903394-1902826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
7-598
               

               
Cow position:
               
chr27:7212392-7212983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 30
               

               
Conread position:
               
7-642
               

               
Cow position:
               
chr27:27019773-27020390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 30
               

               
Conread position:
               
8-133
               

               
Cow position:
               
chr27:26135588-26135467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
8-146
               

               
Cow position:
               
chr27:8262679-8262817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
8-148
               

               
Cow position:
               
chr27:26010116-26009978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
8-163
               

               
Cow position:
               
chr27:9060065-9059906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
8-171
               

               
Cow position:
               
chr27:6374850-6374691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-193
               

               
Cow position:
               
chr27:19962805-19962619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
107, 6
               

               
Conread position:
               
8-221
               

               
Cow position:
               
chr27:17462818-17463033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 206
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr27:19014861-19015075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 30
               

               
Conread position:
               
8-244
               

               
Cow position:
               
chr27:16331663-16331438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr27:24937994-24938243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
8-273
               

               
Cow position:
               
chr27:724384-724654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
8-273
               

               
Cow position:
               
chr27:23079926-23080196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr27:4824787-4825099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chr27:29309351-29309040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
211, 29
               

               
Conread position:
               
8-474
               

               
Cow position:
               
chr27:4805581-4806032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
138, 27
               

               
Conread position:
               
8-503
               

               
Cow position:
               
chr27:27064114-27064600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
8-518
               

               
Cow position:
               
chr27:27683785-27684288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 31
               

               
Conread position:
               
8-569
               

               
Cow position:
               
chr27:22426499-22427059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 30
               

               
Conread position:
               
8-596
               

               
Cow position:
               
chr27:13876056-13875482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 26
               

               
Conread position:
               
9-450
               

               
Cow position:
               
chr27:19931481-19931047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 28
               

               
Conread position:
               
9-509
               

               
Cow position:
               
chr27:12277951-12278412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 14
               

               
Conread position:
               
9-596
               

               
Cow position:
               
chr27:26856882-26857427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 26
               

               
Conread position:
               
9-608
               

               
Cow position:
               
chr27:22035049-22035634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 29
               

               
Conread position:
               
10-160
               

               
Cow position:
               
chr27:7277767-7277914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
10-285
               

               
Cow position:
               
chr27:13257840-13258111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
206, 28
               

               
Conread position:
               
10-358
               

               
Cow position:
               
chr27:26223942-26224294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 27
               

               
Conread position:
               
10-588
               

               
Cow position:
               
chr27:30868413-30868994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 28
               

               
Conread position:
               
11-237
               

               
Cow position:
               
chr27:18218871-18218647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
13-213
               

               
Cow position:
               
chr27:20636173-20635977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
13-371
               

               
Cow position:
               
chr27:28293494-28293133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
219, 24
               

               
Conread position:
               
13-417
               

               
Cow position:
               
chr27:26142118-26141696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
14-154
               

               
Cow position:
               
chr27:31397491-31397352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
14-237
               

               
Cow position:
               
chr27:1654947-1655167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
14-237
               

               
Cow position:
               
chr27:12005833-12005613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
14-277
               

               
Cow position:
               
chr27:26935050-26935312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
139, 23
               

               
Conread position:
               
14-296
               

               
Cow position:
               
chr27:5882190-5882472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 23
               

               
Conread position:
               
15-225
               

               
Cow position:
               
chr27:9922262-9922049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
15-325
               

               
Cow position:
               
chr27:18909574-18909269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
15-417
               

               
Cow position:
               
chr27:27040919-27040528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 19
               

               
Conread position:
               
16-176
               

               
Cow position:
               
chr27:26906363-26906516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
16-270
               

               
Cow position:
               
chr27:4664793-4664541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
17-196
               

               
Cow position:
               
chr27:15761851-15761675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
175, 17
               

               
Conread position:
               
17-228
               

               
Cow position:
               
chr27:28895558-28895766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 20
               

               
Conread position:
               
17-235
               

               
Cow position:
               
chr27:2084421-2084201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
17-270
               

               
Cow position:
               
chr27:18439228-18438972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
20-267
               

               
Cow position:
               
chr27:9254287-9254050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
20-269
               

               
Cow position:
               
chr27:26595745-26595498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
167, 17
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr27:15342815-15343083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
20-367
               

               
Cow position:
               
chr27:30792613-30792965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
20-596
               

               
Cow position:
               
chr27:8062045-8062603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 14
               

               
Conread position:
               
20-597
               

               
Cow position:
               
chr27:26833490-26832926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 18
               

               
Conread position:
               
21-237
               

               
Cow position:
               
chr27:27699708-27699922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
23-135
               

               
Cow position:
               
chr27:12411845-12411956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
23-194
               

               
Cow position:
               
chr27:19390858-19390687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
23-257
               

               
Cow position:
               
chr27:22394483-22394249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
193, 11
               

               
Conread position:
               
23-270
               

               
Cow position:
               
chr27:16099703-16099957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
23-281
               

               
Cow position:
               
chr27:3704471-3704718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
23-296
               

               
Cow position:
               
chr27:3231440-3231167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
188, 14
               

               
Conread position:
               
23-350
               

               
Cow position:
               
chr27:30177256-30177588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
23-423
               

               
Cow position:
               
chr27:2590035-2589639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 11
               

               
Conread position:
               
25-156
               

               
Cow position:
               
chr27:29473473-29473601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
25-183
               

               
Cow position:
               
chr27:29815917-29815762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
25-237
               

               
Cow position:
               
chr27:197608-197399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
25-270
               

               
Cow position:
               
chr27:18205643-18205403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
26-258
               

               
Cow position:
               
chr27:24548490-24548717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
108, 17
               

               
Conread position:
               
26-270
               

               
Cow position:
               
chr27:12650325-12650562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
26-295
               

               
Cow position:
               
chr27:12751380-12751643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
185, 11
               

               
Conread position:
               
26-316
               

               
Cow position:
               
chr27:16513571-16513859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 8
               

               
Conread position:
               
26-497
               

               
Cow position:
               
chr27:24477711-24477262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
26-519
               

               
Cow position:
               
chr27:29208107-29207631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 11
               

               
Conread position:
               
26-595
               

               
Cow position:
               
chr27:29831377-29831958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 11
               

               
Conread position:
               
26-601
               

               
Cow position:
               
chr27:27136224-27136795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 12
               

               
Conread position:
               
27-262
               

               
Cow position:
               
chr27:12058190-12057957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
27-266
               

               
Cow position:
               
chr27:8534893-8534654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
125, 10
               

               
Conread position:
               
27-266
               

               
Cow position:
               
chr27:12553102-12552872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
27-269
               

               
Cow position:
               
chr27:6899404-6899650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
27-588
               

               
Cow position:
               
chr27:27856654-27856096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 216
               

               
Conread position:
               
27-598
               

               
Cow position:
               
chr27:18544308-18543734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 11
               

               
Conread position:
               
28-222
               

               
Cow position:
               
chr27:11326122-11325924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
92, 5
               

               
Conread position:
               
29-268
               

               
Cow position:
               
chr27:13860437-13860673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
182, 8
               

               
Conread position:
               
29-273
               

               
Cow position:
               
chr27:221749-221996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
194, 5
               

               
Conread position:
               
29-423
               

               
Cow position:
               
chr27:28982597-28982986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
194, 5
               

               
Conread position:
               
29-529
               

               
Cow position:
               
chr27:20757750-20758216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
182, 5
               

               
Conread position:
               
31-591
               

               
Cow position:
               
chr27:1636641-1637172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 6
               

               
Conread position:
               
34-383
               

               
Cow position:
               
chr27:15858787-15859129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 113
               

               
Conread position:
               
36-154
               

               
Cow position:
               
chr27:28477176-28477294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-296
               

               
Cow position:
               
chr27:23124054-23124312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
177, 72
               

               
Conread position:
               
36-325
               

               
Cow position:
               
chr27:24559149-24559429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
258, 63
               

               
Conread position:
               
36-448
               

               
Cow position:
               
chr27:23576237-23576643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
113, 187
               

               
Conread position:
               
36-565
               

               
Cow position:
               
chr27:11535796-11536327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
36-605
               

               
Cow position:
               
chr27:29799244-29798692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 48
               

               
Conread position:
               
37-139
               

               
Cow position:
               
chr27:882393-882495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-255
               

               
Cow position:
               
chr27:29046770-29046987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
187, 37
               

               
Conread position:
               
37-316
               

               
Cow position:
               
chr27:27809765-27810046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
186, 242
               

               
Conread position:
               
37-582
               

               
Cow position:
               
chr27:20283924-20283407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 38
               

               
Conread position:
               
38-234
               

               
Cow position:
               
chr27:9436662-9436862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-255
               

               
Cow position:
               
chr27:23793797-23793582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
38-269
               

               
Cow position:
               
chr27:10986789-10987015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
38-316
               

               
Cow position:
               
chr27:26787064-26787339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
38-401
               

               
Cow position:
               
chr27:8291710-8292059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 178
               

               
Conread position:
               
38-568
               

               
Cow position:
               
chr27:16960496-16959975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
38-575
               

               
Cow position:
               
chr27:26424289-26424806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 94
               

               
Conread position:
               
38-608
               

               
Cow position:
               
chr27:20869387-20869947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 250
               

               
Conread position:
               
39-138
               

               
Cow position:
               
chr27:22519066-22518965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
39-233
               

               
Cow position:
               
chr27:66929-67121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
40-234
               

               
Cow position:
               
chr27:13977092-13977288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
40-234
               

               
Cow position:
               
chr27:27578871-27578677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
40-254
               

               
Cow position:
               
chr27:20092324-20092533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
40-325
               

               
Cow position:
               
chr27:22399891-22399609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
40-502
               

               
Cow position:
               
chr27:23882067-23882527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 151
               

               
Conread position:
               
40-575
               

               
Cow position:
               
chr27:29977553-29977018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 67
               

               
Conread position:
               
41-266
               

               
Cow position:
               
chr27:9978123-9977900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
41-295
               

               
Cow position:
               
chr27:164977-164722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
170, 106
               

               
Conread position:
               
41-485
               

               
Cow position:
               
chr27:23016153-23015713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
177, 236
               

               
Conread position:
               
43-267
               

               
Cow position:
               
chr27:26617656-26617438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
43-302
               

               
Cow position:
               
chr27:8195511-8195257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
43-400
               

               
Cow position:
               
chr27:30362537-30362189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 10
               

               
Conread position:
               
43-596
               

               
Cow position:
               
chr27:28189922-28190442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 222
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr27:15465664-15465484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 43
               

               
Conread position:
               
45-185
               

               
Cow position:
               
chr27:16576660-16576520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-270
               

               
Cow position:
               
chr27:3256330-3256110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
47-187
               

               
Cow position:
               
chr27:20748492-20748625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 31
               

               
Conread position:
               
47-224
               

               
Cow position:
               
chr27:23731239-23731418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
48-228
               

               
Cow position:
               
chr27:1785429-1785251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
48-273
               

               
Cow position:
               
chr27:30508474-30508695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
163, 78
               

               
Conread position:
               
48-591
               

               
Cow position:
               
chr27:26919623-26920172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 89
               

               
Conread position:
               
49-423
               

               
Cow position:
               
chr27:8932555-8932180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 232
               

               
Conread position:
               
50-497
               

               
Cow position:
               
chr27:26581158-26581591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 157
               

               
Conread position:
               
50-511
               

               
Cow position:
               
chr27:19589763-19589304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
120, 85
               

               
Conread position:
               
51-325
               

               
Cow position:
               
chr27:7591401-7591673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
51-393
               

               
Cow position:
               
chr27:23930251-23929925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
51-588
               

               
Cow position:
               
chr27:28931502-28932045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
52-295
               

               
Cow position:
               
chr27:12502844-12503088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
104, 114
               

               
Conread position:
               
53-366
               

               
Cow position:
               
chr27:29400102-29399787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
53-482
               

               
Cow position:
               
chr27:30551290-30550851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
53-511
               

               
Cow position:
               
chr27:26412973-26413423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 54
               

               
Conread position:
               
53-593
               

               
Cow position:
               
chr27:7971855-7971313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 222
               

               
Conread position:
               
55-597
               

               
Cow position:
               
chr27:13843487-13842951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 92
               

               
Conread position:
               
56-316
               

               
Cow position:
               
chr27:14633120-14632860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
173, 123
               

               
Conread position:
               
56-373
               

               
Cow position:
               
chr27:22723431-22723740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
270, 26
               

               
Conread position:
               
57-273
               

               
Cow position:
               
chr27:1522893-1523113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
60-263
               

               
Cow position:
               
chr27:8011831-8012037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
96, 105
               

               
Conread position:
               
63-214
               

               
Cow position:
               
chr27:18155301-18155150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-237
               

               
Cow position:
               
chr27:773428-773256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
63-378
               

               
Cow position:
               
chr27:16580893-16580582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
172, 14
               

               
Conread position:
               
65-235
               

               
Cow position:
               
chr27:30845167-30844995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
65-270
               

               
Cow position:
               
chr27:5574275-5574062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
62, 169
               

               
Conread position:
               
65-350
               

               
Cow position:
               
chr27:21139098-21138810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
66-273
               

               
Cow position:
               
chr27:19552156-19552367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
157, 0
               
UCSC Genome Browser

               
Conread position:
               
66-316
               

               
Cow position:
               
chr27:26952809-26952554 (view  custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
139, 216
               
UCSC Genome Browser

               
               
               
Conread position:
66-350

               
               
               
Cow position:
chr27:12429684-12429392 (view  custom track)

               
               
               
Alignm length:
296

               
               
               
Alignm identity:
228

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
51, 85
UCSC Genome Browser

               
               
               
Conread position:
66-580

               
               
               
Cow position:
chr27:21668853-21669347 (view  custom track)

               
               
               
Alignm length:
516

               
               
               
Alignm identity:
358

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
476, 95

               
               
               Conread position:66-582
               
               
               Cow position:chr27:2957676-2957180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 48

               
               
               Conread position:67-273
               
               
               Cow position:chr27:667990-668201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:67-457
               
               
               Cow position:chr27:6909777-6909395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):311, 95

               
               
               Conread position:67-566
               
               
               Cow position:chr27:20067716-20068196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 52

               
               
               Conread position:67-596
               
               
               Cow position:chr27:11422557-11423084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 213

               
               
               Conread position:68-251
               
               
               Cow position:chr27:27455187-27455372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):143, 88

               
               
               Conread position:68-597
               
               
               Cow position:chr27:30406761-30407301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 214

               
               
               Conread position:69-191
               
               
               Cow position:chr27:943382-943503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:69-440
               
               
               Cow position:chr27:14907000-14906631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):135, 78

               
               
               Conread position:69-636
               
               
               Cow position:chr27:31372711-31373262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 54

               
               
               Conread position:72-292
               
               
               Cow position:chr27:2643672-2643877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:72-423
               
               
               Cow position:chr27:29198279-29198629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):151, 207

               
               
               Conread position:72-521
               
               
               Cow position:chr27:6550717-6550283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 165

               
               
               Conread position:74-563
               
               
               Cow position:chr27:11815495-11815966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:75-588
               
               
               Cow position:chr27:7412646-7412150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 207

               
               
               Conread position:76-608
               
               
               Cow position:chr27:7851640-7851125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:77-219
               
               
               Cow position:chr27:798349-798491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:77-539
               
               
               Cow position:chr27:11273828-11273379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:79-237
               
               
               Cow position:chr27:24689865-24689709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:80-270
               
               
               Cow position:chr27:4928259-4928452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:80-586
               
               
               Cow position:chr27:24331987-24331473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:80-607
               
               
               Cow position:chr27:28921641-28922158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 27

               
               
               Conread position:81-596
               
               
               Cow position:chr27:28518542-28518042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 66

               
               
               Conread position:82-273
               
               
               Cow position:chr27:27622757-27622952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:83-237
               
               
               Cow position:chr27:160745-160593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:83-364
               
               
               Cow position:chr27:8925688-8925414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):137, 64

               
               
               Conread position:83-400
               
               
               Cow position:chr27:16263588-16263285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 58

               
               
               Conread position:83-521
               
               
               Cow position:chr27:23483480-23483047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 133

               
               
               Conread position:83-582
               
               
               Cow position:chr27:15203976-15204473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 196

               
               
               Conread position:83-593
               
               
               Cow position:chr27:26508906-26509404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:83-608
               
               
               Cow position:chr27:18507887-18507380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 139

               
               
               Conread position:86-322
               
               
               Cow position:chr27:26436622-26436862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):149, 62

               
               
               Conread position:87-263
               
               
               Cow position:chr27:22293461-22293635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:87-296
               
               
               Cow position:chr27:1672021-1672226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:87-521
               
               
               Cow position:chr27:31147422-31147866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 192

               
               
               Conread position:87-592
               
               
               Cow position:chr27:12516448-12515947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:87-596
               
               
               Cow position:chr27:2930345-2930842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 197

               
               
               Conread position:88-270
               
               
               Cow position:chr27:630571-630389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:88-273
               
               
               Cow position:chr27:3638574-3638763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:88-316
               
               
               Cow position:chr27:7425888-7426119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):5, 135

               
               
               Conread position:88-400
               
               
               Cow position:chr27:27843742-27844055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 181

               
               
               Conread position:88-489
               
               
               Cow position:chr27:24014491-24014886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 59

               
               
               Conread position:88-527
               
               
               Cow position:chr27:1290618-1291033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):239, 83

               
               
               Conread position:89-237
               
               
               Cow position:chr27:11094905-11094759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:89-314
               
               
               Cow position:chr27:12263836-12263614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):208, 147

               
               
               Conread position:90-234
               
               
               Cow position:chr27:24239647-24239496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 42

               
               
               Conread position:91-358
               
               
               Cow position:chr27:26492453-26492722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):120, 173

               
               
               Conread position:91-588
               
               
               Cow position:chr27:27388781-27389270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 52

               
               
               Conread position:93-247
               
               
               Cow position:chr27:6015989-6015837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:93-248
               
               
               Cow position:chr27:29693945-29693794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:93-273
               
               
               Cow position:chr27:13837561-13837377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:93-280
               
               
               Cow position:chr27:26573166-26573360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:93-504
               
               
               Cow position:chr27:11081441-11081039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 78

               
               
               Conread position:95-260
               
               
               Cow position:chr27:18559027-18558861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:95-588
               
               
               Cow position:chr27:26864877-26865351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:96-280
               
               
               Cow position:chr27:22608894-22609083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:96-582
               
               
               Cow position:chr27:22220796-22220313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 173

               
               
               Conread position:96-588
               
               
               Cow position:chr27:10980106-10979617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 180

               
               
               Conread position:96-598
               
               
               Cow position:chr27:16284715-16284234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:96-598
               
               
               Cow position:chr27:30890528-30890049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:98-497
               
               
               Cow position:chr27:24738556-24738954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):23, 111

               
               
               Conread position:98-582
               
               
               Cow position:chr27:29493677-29494135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):348, 49

               
               
               Conread position:98-595
               
               
               Cow position:chr27:6541865-6541384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 122

               
               
               Conread position:99-409
               
               
               Cow position:chr27:14902410-14902719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 48

               
               
               Conread position:101-238
               
               
               Cow position:chr27:27607031-27607168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:101-268
               
               
               Cow position:chr27:26935681-26935849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:101-474
               
               
               Cow position:chr27:26440821-26441178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):118, 35

               
               
               Conread position:101-575
               
               
               Cow position:chr27:6500302-6499828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 182

               
               
               Conread position:103-517
               
               
               Cow position:chr27:25783837-25783453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:104-346
               
               
               Cow position:chr27:13006068-13005832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:104-517
               
               
               Cow position:chr27:26643907-26643515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):377, 93

               
               
               Conread position:105-226
               
               
               Cow position:chr27:23083788-23083666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 5

               
               
               Conread position:106-600
               
               
               Cow position:chr27:7934931-7935410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 116

               
               
               Conread position:111-548
               
               
               Cow position:chr27:20796011-20795586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 93

               
               
               Conread position:111-575
               
               
               Cow position:chr27:23554096-23554559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:113-268
               
               
               Cow position:chr27:30185518-30185359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:113-491
               
               
               Cow position:chr27:24321413-24321041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:114-213
               
               
               Cow position:chr27:20481176-20481275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:114-269
               
               
               Cow position:chr27:15200921-15200763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:114-296
               
               
               Cow position:chr27:2110678-2110498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:114-315
               
               
               Cow position:chr27:2011879-2012078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):151, 55

               
               
               Conread position:114-316
               
               
               Cow position:chr27:21418842-21419044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):153, 165

               
               
               Conread position:114-346
               
               
               Cow position:chr27:6058726-6058493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:114-401
               
               
               Cow position:chr27:20544176-20543888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 172

               
               
               Conread position:114-469
               
               
               Cow position:chr27:4835382-4835732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 156

               
               
               Conread position:114-485
               
               
               Cow position:chr27:26319261-26318892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:114-588
               
               
               Cow position:chr27:23917833-23918277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:114-593
               
               
               Cow position:chr27:4390030-4390505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:325
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):102, 127

               
               
               Conread position:114-596
               
               
               Cow position:chr27:13638768-13639238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 165

               
               
               Conread position:114-602
               
               
               Cow position:chr27:28001599-28002060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 7

               
               
               Conread position:115-232
               
               
               Cow position:chr27:18741308-18741422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:115-268
               
               
               Cow position:chr27:11762516-11762673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:115-275
               
               
               Cow position:chr27:21578379-21578539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:115-279
               
               
               Cow position:chr27:1998360-1998196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:115-280
               
               
               Cow position:chr27:795005-794840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):154, 32

               
               
               Conread position:115-293
               
               
               Cow position:chr27:2848118-2847941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:115-296
               
               
               Cow position:chr27:31216940-31217123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):120, 164

               
               
               Conread position:115-316
               
               
               Cow position:chr27:30527389-30527199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:115-343
               
               
               Cow position:chr27:29019523-29019757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:115-346
               
               
               Cow position:chr27:25676458-25676218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 160

               
               
               Conread position:115-351
               
               
               Cow position:chr27:19577897-19577661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:115-359
               
               
               Cow position:chr27:8048516-8048763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 57

               
               
               Conread position:115-401
               
               
               Cow position:chr27:26379954-26380230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:115-521
               
               
               Cow position:chr27:19543686-19544100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):165, 99

               
               
               Conread position:115-582
               
               
               Cow position:chr27:12596980-12596545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:115-583
               
               
               Cow position:chr27:19661166-19660689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:115-585
               
               
               Cow position:chr27:27632386-27632833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:314
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):120, 151

               
               
               Conread position:115-591
               
               
               Cow position:chr27:30765255-30764786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 108

               
               
               Conread position:116-401
               
               
               Cow position:chr27:1183654-1183942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:117-401
               
               
               Cow position:chr27:28038116-28038397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):99, 152

               
               
               Conread position:117-474
               
               
               Cow position:chr27:4812656-4813014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):92, 30

               
               
               Conread position:117-617
               
               
               Cow position:chr27:2592762-2592265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 30

               
               
               Conread position:118-237
               
               
               Cow position:chr27:29502914-29503036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:118-537
               
               
               Cow position:chr27:26218915-26218518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 18

               
               
               Conread position:118-572
               
               
               Cow position:chr27:20369259-20368805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:310
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):74, 130

               
               
               Conread position:119-217
               
               
               Cow position:chr27:12630667-12630569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:119-385
               
               
               Cow position:chr27:20765744-20766002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):174, 103

               
               
               Conread position:119-418
               
               
               Cow position:chr27:27259827-27259540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 28

               
               
               Conread position:119-506
               
               
               Cow position:chr27:29038721-29039105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):65, 123

               
               
               Conread position:119-537
               
               
               Cow position:chr27:30354126-30354541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 34

               
               
               Conread position:120-474
               
               
               Cow position:chr27:25998923-25998571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 149

               
               
               Conread position:121-325
               
               
               Cow position:chr27:22771975-22771767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):110, 162

               
               
               Conread position:121-549
               
               
               Cow position:chr27:27640775-27641218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:122-316
               
               
               Cow position:chr27:26163594-26163409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):148, 55

               
               
               Conread position:123-221
               
               
               Cow position:chr27:1565041-1564944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:123-293
               
               
               Cow position:chr27:27528146-27528313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:123-349
               
               
               Cow position:chr27:22498768-22498546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 53

               
               
               Conread position:123-496
               
               
               Cow position:chr27:20553932-20553578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):358, 117

               
               
               Conread position:123-505
               
               
               Cow position:chr27:21452855-21453257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:124-268
               
               
               Cow position:chr27:22518842-22518699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:124-588
               
               
               Cow position:chr27:15668553-15669017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:125-267
               
               
               Cow position:chr27:26406830-26406973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:125-281
               
               
               Cow position:chr27:7495470-7495309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:125-316
               
               
               Cow position:chr27:24342117-24341923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:125-325
               
               
               Cow position:chr27:28164198-28164390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:125-363
               
               
               Cow position:chr27:17926424-17926645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:125-396
               
               
               Cow position:chr27:707160-706897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):201, 22

               
               
               Conread position:125-434
               
               
               Cow position:chr27:2682930-2683236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):116, 97

               
               
               Conread position:125-521
               
               
               Cow position:chr27:22454565-22454955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 94

               
               
               Conread position:125-569
               
               
               Cow position:chr27:26239237-26238800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 51

               
               
               Conread position:125-598
               
               
               Cow position:chr27:16871706-16872185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):202, 22

               
               
               Conread position:126-267
               
               
               Cow position:chr27:9159406-9159266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:126-268
               
               
               Cow position:chr27:17924097-17924243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:126-374
               
               
               Cow position:chr27:30605895-30605651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):110, 169

               
               
               Conread position:127-521
               
               
               Cow position:chr27:30359606-30359228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 52

               
               
               Conread position:128-269
               
               
               Cow position:chr27:13847849-13847708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:128-304
               
               
               Cow position:chr27:20561915-20561742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):139, 94

               
               
               Conread position:128-400
               
               
               Cow position:chr27:27053507-27053237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):86, 147

               
               
               Conread position:129-588
               
               
               Cow position:chr27:22547197-22547631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:129-598
               
               
               Cow position:chr27:16478139-16478575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):193, 36

               
               
               Conread position:130-261
               
               
               Cow position:chr27:10275491-10275611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:130-413
               
               
               Cow position:chr27:29283203-29283478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):197, 9

               
               
               Conread position:131-479
               
               
               Cow position:chr27:18593475-18593137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):87, 16

               
               
               Conread position:131-488
               
               
               Cow position:chr27:1498521-1498170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):196, 64

               
               
               Conread position:131-516
               
               
               Cow position:chr27:25277342-25276970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 7

               
               
               Conread position:131-588
               
               
               Cow position:chr27:30814609-30814174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):192, 23

               
               
               Conread position:132-354
               
               
               Cow position:chr27:18215262-18215036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):84, 150

               
               
               Conread position:132-364
               
               
               Cow position:chr27:1884244-1884024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):40, 134

               
               
               Conread position:132-507
               
               
               Cow position:chr27:19647738-19648108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):189, 26

               
               
               Conread position:133-269
               
               
               Cow position:chr27:31267075-31267213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:133-373
               
               
               Cow position:chr27:26885046-26885286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:133-582
               
               
               Cow position:chr27:20354785-20354363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 78

               
               
               Conread position:133-596
               
               
               Cow position:chr27:20552564-20553026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 74

               
               
               Conread position:134-354
               
               
               Cow position:chr27:29251084-29250863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:135-316
               
               
               Cow position:chr27:26625329-26625150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:135-316
               
               
               Cow position:chr27:27055781-27055599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):76, 134

               
               
               Conread position:135-574
               
               
               Cow position:chr27:19685511-19685939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 87

               
               
               Conread position:135-582
               
               
               Cow position:chr27:19546301-19546758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:136-267
               
               
               Cow position:chr27:23558183-23558318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:136-314
               
               
               Cow position:chr27:28061560-28061737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 124

               
               
               Conread position:136-325
               
               
               Cow position:chr27:24027174-24026990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 104

               
               
               Conread position:136-608
               
               
               Cow position:chr27:27003079-27003521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 77

               
               
               Conread position:138-574
               
               
               Cow position:chr27:29085915-29086345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):189, 9

               
               
               Conread position:138-591
               
               
               Cow position:chr27:19497075-19496633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):127, 140

               
               
               Conread position:139-414
               
               
               Cow position:chr27:21569644-21569911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):186, 111

               
               
               Conread position:139-596
               
               
               Cow position:chr27:18030860-18031321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:140-529
               
               
               Cow position:chr27:910886-911283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):185, 90

               
               
               Conread position:140-595
               
               
               Cow position:chr27:30915200-30914756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 76

               
               
               Conread position:141-316
               
               
               Cow position:chr27:6037319-6037148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):157, 12

               
               
               Conread position:141-390
               
               
               Cow position:chr27:30843881-30844125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):184, 61

               
               
               Conread position:144-470
               
               
               Cow position:chr27:11296452-11296143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:146-600
               
               
               Cow position:chr27:27554494-27554935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:303
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):203, 39

               
               
               Conread position:147-269
               
               
               Cow position:chr27:783921-783799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-584
               
               
               Cow position:chr27:16705438-16705014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 118

               
               
               Conread position:148-315
               
               
               Cow position:chr27:30989652-30989819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 99

               
               
               Conread position:148-354
               
               
               Cow position:chr27:18434281-18434486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:148-363
               
               
               Cow position:chr27:20592174-20591956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 135

               
               
               Conread position:148-479
               
               
               Cow position:chr27:14937238-14937564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):170, 59

               
               
               Conread position:148-491
               
               
               Cow position:chr27:26151210-26150869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):177, 83

               
               
               Conread position:148-521
               
               
               Cow position:chr27:30988989-30988619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 99

               
               
               Conread position:148-526
               
               
               Cow position:chr27:20036938-20037301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):333, 71

               
               
               Conread position:149-287
               
               
               Cow position:chr27:68252-68392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:149-399
               
               
               Cow position:chr27:30670927-30670684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):176, 91

               
               
               Conread position:149-574
               
               
               Cow position:chr27:18739577-18739145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 131

               
               
               Conread position:150-346
               
               
               Cow position:chr27:31499256-31499055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):127, 69

               
               
               Conread position:153-591
               
               
               Cow position:chr27:28496191-28496616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:153-609
               
               
               Cow position:chr27:13252195-13251764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:154-596
               
               
               Cow position:chr27:6052283-6051833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:293
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):84, 10

               
               
               Conread position:155-599
               
               
               Cow position:chr27:6788142-6787698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):67, 52

               
               
               Conread position:156-354
               
               
               Cow position:chr27:27550565-27550758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):169, 84

               
               
               Conread position:157-600
               
               
               Cow position:chr27:29431637-29431220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:159-450
               
               
               Cow position:chr27:4067-3790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):64, 95

               
               
               Conread position:164-496
               
               
               Cow position:chr27:9169470-9169792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):161, 101

               
               
               Conread position:166-358
               
               
               Cow position:chr27:24357438-24357238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:167-580
               
               
               Cow position:chr27:15408872-15409260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):211, 98

               
               
               Conread position:167-585
               
               
               Cow position:chr27:27441995-27442399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:167-594
               
               
               Cow position:chr27:13841548-13841114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:167-605
               
               
               Cow position:chr27:25427737-25428168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 30

               
               
               Conread position:169-292
               
               
               Cow position:chr27:13254586-13254705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:170-401
               
               
               Cow position:chr27:22268673-22268443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:171-315
               
               
               Cow position:chr27:28008891-28009035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:171-521
               
               
               Cow position:chr27:15643343-15642996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:175-588
               
               
               Cow position:chr27:4944365-4944749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):170, 47

               
               
               Conread position:175-612
               
               
               Cow position:chr27:27438341-27438776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 158

               
               
               Conread position:176-596
               
               
               Cow position:chr27:30871897-30872308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 89

               
               
               Conread position:176-598
               
               
               Cow position:chr27:20046040-20045643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):202, 40

               
               
               Conread position:177-588
               
               
               Cow position:chr27:7346822-7346427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):147, 50

               
               
               Conread position:177-605
               
               
               Cow position:chr27:19668627-19669067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:177-611
               
               
               Cow position:chr27:19896918-19896505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:178-510
               
               
               Cow position:chr27:3306936-3306607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:178-522
               
               
               Cow position:chr27:27270377-27270721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:179-592
               
               
               Cow position:chr27:11480470-11480885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 99

               
               
               Conread position:181-598
               
               
               Cow position:chr27:14343310-14343688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:183-572
               
               
               Cow position:chr27:23891093-23890706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 44

               
               
               Conread position:184-569
               
               
               Cow position:chr27:22735447-22735818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):48, 100

               
               
               Conread position:184-596
               
               
               Cow position:chr27:22513520-22513932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:185-581
               
               
               Cow position:chr27:7731095-7731510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:285
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:186-526
               
               
               Cow position:chr27:28270994-28271334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):86, 169

               
               
               Conread position:189-573
               
               
               Cow position:chr27:26489752-26490133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:190-487
               
               
               Cow position:chr27:715652-715357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:190-588
               
               
               Cow position:chr27:16103951-16103568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 17

               
               
               Conread position:191-605
               
               
               Cow position:chr27:28467291-28467729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:197-400
               
               
               Cow position:chr27:4011815-4011622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:198-448
               
               
               Cow position:chr27:20789239-20789484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:200-594
               
               
               Cow position:chr27:427111-426721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:203-605
               
               
               Cow position:chr27:19500097-19500497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):21, 63

               
               
               Conread position:207-508
               
               
               Cow position:chr27:20919019-20918727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:207-588
               
               
               Cow position:chr27:7649458-7649834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):170, 7

               
               
               Conread position:210-593
               
               
               Cow position:chr27:7614960-7615317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:210-596
               
               
               Cow position:chr27:16965716-16965323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:211-396
               
               
               Cow position:chr27:10395134-10395312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:211-608
               
               
               Cow position:chr27:8168302-8168683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:214-588
               
               
               Cow position:chr27:16275550-16275923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):164, 23

               
               
               Conread position:220-400
               
               
               Cow position:chr27:6350711-6350897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 142

               
               
               Conread position:220-516
               
               
               Cow position:chr27:23545202-23545504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:220-595
               
               
               Cow position:chr27:20078985-20078615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:221-574
               
               
               Cow position:chr27:27694655-27695004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:221-598
               
               
               Cow position:chr27:26226173-26226544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:224-591
               
               
               Cow position:chr27:17994828-17995187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:227-588
               
               
               Cow position:chr27:11151787-11151427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:229-519
               
               
               Cow position:chr27:29380967-29380678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:230-540
               
               
               Cow position:chr27:13274046-13274358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:236-600
               
               
               Cow position:chr27:23594418-23594065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):142, 29

               
               
               Conread position:244-504
               
               
               Cow position:chr27:8263240-8263500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 39

               
               
               Conread position:244-516
               
               
               Cow position:chr27:24940004-24939718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:244-588
               
               
               Cow position:chr27:23511084-23510732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:244-598
               
               
               Cow position:chr27:22559727-22560079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:247-588
               
               
               Cow position:chr27:16088907-16088548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:248-595
               
               
               Cow position:chr27:26852502-26852832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:260-601
               
               
               Cow position:chr27:590687-591023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):221, 22

               
               
               Conread position:263-596
               
               
               Cow position:chr27:6925166-6924831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:266-522
               
               
               Cow position:chr27:15215307-15215047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:270-600
               
               
               Cow position:chr27:26111839-26112172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:273-608
               
               
               Cow position:chr27:20514888-20514560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:274-596
               
               
               Cow position:chr27:10659247-10658927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:275-523
               
               
               Cow position:chr27:23876773-23877025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 194

               
               
               Conread position:278-515
               
               
               Cow position:chr27:20812968-20812732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:278-595
               
               
               Cow position:chr27:28896941-28896628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:279-584
               
               
               Cow position:chr27:22489340-22489034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):106, 48

               
               
               Conread position:279-595
               
               
               Cow position:chr27:13869680-13869370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:279-596
               
               
               Cow position:chr27:23559969-23560281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:279-598
               
               
               Cow position:chr27:27405007-27405322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:284-605
               
               
               Cow position:chr27:31151434-31151122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:294-582
               
               
               Cow position:chr27:15865658-15865373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:297-513
               
               
               Cow position:chr27:20803613-20803829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:298-596
               
               
               Cow position:chr27:12459323-12459037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):184, 8

               
               
               Conread position:298-598
               
               
               Cow position:chr27:18882698-18882401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:300-597
               
               
               Cow position:chr27:29593588-29593879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 5

               
               
               Conread position:301-521
               
               
               Cow position:chr27:17918275-17918490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:305-595
               
               
               Cow position:chr27:12425324-12425037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:305-610
               
               
               Cow position:chr27:16249339-16249647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:309-605
               
               
               Cow position:chr27:19933097-19932806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:310-597
               
               
               Cow position:chr27:10436699-10436980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:310-605
               
               
               Cow position:chr27:6290503-6290214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:312-593
               
               
               Cow position:chr27:12564394-12564676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:324-588
               
               
               Cow position:chr27:212978-212708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:324-592
               
               
               Cow position:chr27:19509029-19508765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):158, 24

               
               
               Conread position:324-598
               
               
               Cow position:chr27:11561790-11561522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:325-593
               
               
               Cow position:chr27:5545595-5545332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:325-596
               
               
               Cow position:chr27:26437105-26437371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:325-609
               
               
               Cow position:chr27:12658333-12658616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 12

               
               
               Conread position:331-596
               
               
               Cow position:chr27:20591941-20591676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):161, 123

               
               
               Conread position:333-598
               
               
               Cow position:chr27:31210553-31210297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):155, 15

               
               
               Conread position:333-608
               
               
               Cow position:chr27:17933934-17933658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:338-588
               
               
               Cow position:chr27:9977692-9977443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:347-598
               
               
               Cow position:chr27:30455989-30455740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:348-608
               
               
               Cow position:chr27:15238741-15238478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 212

               
               
               Conread position:348-609
               
               
               Cow position:chr27:20486055-20485778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:349-596
               
               
               Cow position:chr27:31452339-31452091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:350-593
               
               
               Cow position:chr27:23148160-23147917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 213

               
               
               Conread position:351-596
               
               
               Cow position:chr27:24393989-24393742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:352-567
               
               
               Cow position:chr27:22552891-22553100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:352-598
               
               
               Cow position:chr27:5553460-5553218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:352-600
               
               
               Cow position:chr27:29991454-29991714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:354-587
               
               
               Cow position:chr27:27058416-27058647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 6

               
               
               Conread position:355-594
               
               
               Cow position:chr27:15926785-15926547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:355-596
               
               
               Cow position:chr27:14818222-14817980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):23, 226

               
               
               Conread position:355-600
               
               
               Cow position:chr27:27740302-27740548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:355-605
               
               
               Cow position:chr27:19607670-19607922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:357-588
               
               
               Cow position:chr27:20719275-20719042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:357-588
               
               
               Cow position:chr27:23507639-23507407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:357-588
               
               
               Cow position:chr27:31386643-31386873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 145

               
               
               Conread position:358-620
               
               
               Cow position:chr27:26883270-26883534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):9, 212

               
               
               Conread position:359-586
               
               
               Cow position:chr27:18435147-18435371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 142

               
               
               Conread position:360-558
               
               
               Cow position:chr27:19485858-19485658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:360-564
               
               
               Cow position:chr27:1190491-1190695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):127, 18

               
               
               Conread position:360-566
               
               
               Cow position:chr27:24709537-24709333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:360-596
               
               
               Cow position:chr27:6282815-6282582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:360-600
               
               
               Cow position:chr27:29319395-29319149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:360-605
               
               
               Cow position:chr27:26245565-26245806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:360-608
               
               
               Cow position:chr27:7304620-7304869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 115

               
               
               Conread position:360-609
               
               
               Cow position:chr27:29693461-29693203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:361-595
               
               
               Cow position:chr27:26121743-26121507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 151

               
               
               Conread position:361-595
               
               
               Cow position:chr27:30483314-30483555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:361-605
               
               
               Cow position:chr27:10404133-10404377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:361-608
               
               
               Cow position:chr27:31170081-31170335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:363-609
               
               
               Cow position:chr27:26163387-26163140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:364-594
               
               
               Cow position:chr27:15002998-15003229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:364-596
               
               
               Cow position:chr27:12187142-12187375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:364-610
               
               
               Cow position:chr27:10598969-10598721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:365-550
               
               
               Cow position:chr27:15825742-15825928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:372-575
               
               
               Cow position:chr27:29160015-29160214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:374-565
               
               
               Cow position:chr27:21666109-21666301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:374-574
               
               
               Cow position:chr27:24731070-24731267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:374-595
               
               
               Cow position:chr27:19681921-19681698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:374-595
               
               
               Cow position:chr27:30414934-30415154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):113, 162

               
               
               Conread position:374-596
               
               
               Cow position:chr27:24007437-24007214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:374-597
               
               
               Cow position:chr27:1981313-1981088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:374-608
               
               
               Cow position:chr27:7802040-7801802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:374-608
               
               
               Cow position:chr27:20653286-20653521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:376-588
               
               
               Cow position:chr27:24693380-24693175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:376-607
               
               
               Cow position:chr27:3518472-3518239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:377-594
               
               
               Cow position:chr27:22401452-22401234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:377-605
               
               
               Cow position:chr27:20539806-20540037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:377-606
               
               
               Cow position:chr27:19452968-19452737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):104, 123

               
               
               Conread position:378-601
               
               
               Cow position:chr27:20612486-20612264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:379-600
               
               
               Cow position:chr27:19557349-19557141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:380-606
               
               
               Cow position:chr27:11323293-11323066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 222

               
               
               Conread position:383-608
               
               
               Cow position:chr27:24303907-24303678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):103, 177

               
               
               Conread position:384-595
               
               
               Cow position:chr27:19411657-19411871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:386-540
               
               
               Cow position:chr27:27747508-27747663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:386-608
               
               
               Cow position:chr27:18791552-18791777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:387-619
               
               
               Cow position:chr27:15237769-15237537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:389-587
               
               
               Cow position:chr27:19576369-19576565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:389-597
               
               
               Cow position:chr27:18688455-18688662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 196

               
               
               Conread position:390-588
               
               
               Cow position:chr27:26118453-26118254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:390-608
               
               
               Cow position:chr27:19483148-19483365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 163

               
               
               Conread position:391-575
               
               
               Cow position:chr27:232506-232321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:395-596
               
               
               Cow position:chr27:11507315-11507515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 81

               
               
               Conread position:404-575
               
               
               Cow position:chr27:26909652-26909818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 111

               
               
               Conread position:405-608
               
               
               Cow position:chr27:21202131-21201926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:407-597
               
               
               Cow position:chr27:20127361-20127550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:407-639
               
               
               Cow position:chr27:27827914-27828152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):93, 207

               
               
               Conread position:409-611
               
               
               Cow position:chr27:1810152-1810354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 58

               
               
               Conread position:412-596
               
               
               Cow position:chr27:22607131-22606951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:412-598
               
               
               Cow position:chr27:26980031-26980218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:421-605
               
               
               Cow position:chr27:1292669-1292484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:422-575
               
               
               Cow position:chr27:23177391-23177542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:422-606
               
               
               Cow position:chr27:18813618-18813807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:423-588
               
               
               Cow position:chr27:22583667-22583500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:423-598
               
               
               Cow position:chr27:19805776-19805949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:423-608
               
               
               Cow position:chr27:28015812-28015999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:425-608
               
               
               Cow position:chr27:15350429-15350615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:428-588
               
               
               Cow position:chr27:178778-178620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 72

               
               
               Conread position:428-588
               
               
               Cow position:chr27:26984077-26983920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:428-594
               
               
               Cow position:chr27:31183491-31183324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 149

               
               
               Conread position:428-596
               
               
               Cow position:chr27:6505330-6505499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:428-598
               
               
               Cow position:chr27:12947879-12948050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:428-598
               
               
               Cow position:chr27:19779792-19779624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:428-608
               
               
               Cow position:chr27:19774986-19774805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:428-610
               
               
               Cow position:chr27:18121131-18121315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 182

               
               
               Conread position:429-588
               
               
               Cow position:chr27:11208640-11208800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:429-593
               
               
               Cow position:chr27:31157726-31157562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:429-608
               
               
               Cow position:chr27:26317980-26317806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):60, 132

               
               
               Conread position:430-588
               
               
               Cow position:chr27:19074109-19074266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:430-598
               
               
               Cow position:chr27:29308260-29308090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:430-605
               
               
               Cow position:chr27:4544435-4544611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:430-606
               
               
               Cow position:chr27:17908346-17908521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:431-609
               
               
               Cow position:chr27:25139828-25139650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):150, 67

               
               
               Conread position:436-591
               
               
               Cow position:chr27:21054367-21054211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:438-577
               
               
               Cow position:chr27:26625114-26624975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):48, 106

               
               
               Conread position:438-586
               
               
               Cow position:chr27:22150789-22150934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:438-601
               
               
               Cow position:chr27:4486872-4487038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:438-617
               
               
               Cow position:chr27:17912616-17912797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:440-591
               
               
               Cow position:chr27:27012602-27012448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:441-598
               
               
               Cow position:chr27:29614944-29614789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:443-595
               
               
               Cow position:chr27:30441605-30441451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:445-596
               
               
               Cow position:chr27:21981382-21981534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:446-596
               
               
               Cow position:chr27:26173398-26173247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:447-591
               
               
               Cow position:chr27:26467662-26467807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:458-596
               
               
               Cow position:chr27:24966988-24967127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:459-588
               
               
               Cow position:chr27:6752065-6751935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:459-596
               
               
               Cow position:chr27:19653687-19653828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:459-596
               
               
               Cow position:chr27:29458216-29458079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 60
Show alignments to all cow chromosomes.