Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 277-605 |
| Cow position: | chr10:3544611-3544283 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 6, 148 |
| Conread position: | 609-789 |
| Cow position: | chr10:184083-184263 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 40 |
| Conread position: | 609-815 |
| Cow position: | chr10:21518514-21518310 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 609-815 |
| Cow position: | chr10:21901376-21901179 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 106, 128 |
| Conread position: | 609-815 |
| Cow position: | chr10:34685713-34685921 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-815 |
| Cow position: | chr10:42109550-42109755 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 609-816 |
| Cow position: | chr10:8328494-8328296 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 108, 54 |
| Conread position: | 609-816 |
| Cow position: | chr10:24299034-24298826 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 157 |
| Conread position: | 609-816 |
| Cow position: | chr10:29633041-29632834 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 609-816 |
| Cow position: | chr10:31523657-31523853 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 609-816 |
| Cow position: | chr10:38546405-38546196 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-816 |
| Cow position: | chr10:38847191-38847392 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 609-816 |
| Cow position: | chr10:42747919-42748126 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 609-816 |
| Cow position: | chr10:46191192-46191394 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 110, 54 |
| Conread position: | 609-816 |
| Cow position: | chr10:62216424-62216635 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 610-806 |
| Cow position: | chr10:7282864-7282667 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-806 |
| Cow position: | chr10:10581492-10581691 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-806 |
| Cow position: | chr10:29846791-29846591 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-806 |
| Cow position: | chr10:39817531-39817332 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 610-806 |
| Cow position: | chr10:41566929-41567125 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 107, 48 |
| Conread position: | 610-814 |
| Cow position: | chr10:124128-124336 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 610-814 |
| Cow position: | chr10:1375355-1375561 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr10:4499527-4499715 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 107, 45 |
| Conread position: | 610-814 |
| Cow position: | chr10:8289802-8290009 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 610-814 |
| Cow position: | chr10:21486735-21486940 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 610-814 |
| Cow position: | chr10:22101060-22101258 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 61, 118 |
| Conread position: | 610-814 |
| Cow position: | chr10:25359218-25359425 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 610-814 |
| Cow position: | chr10:37769641-37769849 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr10:62409033-62408829 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 125 |
| Conread position: | 610-816 |
| Cow position: | chr10:14859796-14860004 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 610-816 |
| Cow position: | chr10:20383723-20383516 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 107, 43 |
| Conread position: | 610-816 |
| Cow position: | chr10:32650551-32650761 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-816 |
| Cow position: | chr10:41351935-41351725 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 611-814 |
| Cow position: | chr10:19839972-19840179 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 167 |
| Conread position: | 612-806 |
| Cow position: | chr10:38345542-38345344 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 612-814 |
| Cow position: | chr10:57990143-57989937 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 613-754 |
| Cow position: | chr10:42664049-42664187 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 613-774 |
| Cow position: | chr10:55092932-55093097 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-793 |
| Cow position: | chr10:21076186-21076366 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 613-806 |
| Cow position: | chr10:14803656-14803854 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-808 |
| Cow position: | chr10:64303149-64302949 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 613-814 |
| Cow position: | chr10:4192390-4192191 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 52 |
| Conread position: | 613-814 |
| Cow position: | chr10:19496455-19496260 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 613-814 |
| Cow position: | chr10:32578125-32578329 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 613-814 |
| Cow position: | chr10:41876740-41876945 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-814 |
| Cow position: | chr10:42683245-42683441 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 143 |
| Conread position: | 613-815 |
| Cow position: | chr10:24314003-24313804 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 107, 43 |
| Conread position: | 616-815 |
| Cow position: | chr10:32063977-32064173 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 618-815 |
| Cow position: | chr10:28116596-28116399 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 619-780 |
| Cow position: | chr10:61297158-61297319 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 98, 68 |
| Conread position: | 619-806 |
| Cow position: | chr10:25498183-25498370 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 619-816 |
| Cow position: | chr10:276421-276622 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 619-816 |
| Cow position: | chr10:13366025-13365822 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 619-816 |
| Cow position: | chr10:60489494-60489688 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 619-816 |
| Cow position: | chr10:62778171-62778374 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 622-806 |
| Cow position: | chr10:11685833-11685649 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 95, 46 |
| Conread position: | 622-806 |
| Cow position: | chr10:25565415-25565227 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr10:47906611-47906796 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 622-814 |
| Cow position: | chr10:21400841-21400645 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 622-814 |
| Cow position: | chr10:21740918-21740725 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 622-814 |
| Cow position: | chr10:51952771-51952579 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 622-814 |
| Cow position: | chr10:54059521-54059328 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 98, 39 |
| Conread position: | 622-815 |
| Cow position: | chr10:29696072-29696264 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 622-815 |
| Cow position: | chr10:31537159-31537355 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 623-815 |
| Cow position: | chr10:10478311-10478121 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 625-814 |
| Cow position: | chr10:65307957-65308150 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 631-814 |
| Cow position: | chr10:57559712-57559522 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 634-814 |
| Cow position: | chr10:14928491-14928673 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 48, 144 |
| Conread position: | 641-815 |
| Cow position: | chr10:3543724-3543552 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 78, 107 |
| Conread position: | 644-785 |
| Cow position: | chr10:6260912-6260767 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 648-816 |
| Cow position: | chr10:15862278-15862108 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 650-815 |
| Cow position: | chr10:39904784-39904955 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 672-816 |
| Cow position: | chr10:39854133-39853986 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 675-816 |
| Cow position: | chr10:22842665-22842808 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 676-816 |
| Cow position: | chr10:28932459-28932319 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 33 |
Show alignments to all cow chromosomes.