Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 37-609 |
| Cow position: | chr11:11123796-11124348 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 233-607 |
| Cow position: | chr11:81854071-81853699 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 581-816 |
| Cow position: | chr11:75919849-75920081 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 609-789 |
| Cow position: | chr11:3240077-3240254 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 105, 36 |
| Conread position: | 609-789 |
| Cow position: | chr11:29234189-29234009 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 111, 53 |
| Conread position: | 609-801 |
| Cow position: | chr11:17280781-17280593 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 609-806 |
| Cow position: | chr11:8887694-8887496 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-814 |
| Cow position: | chr11:37093606-37093397 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 609-815 |
| Cow position: | chr11:28050326-28050124 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 54 |
| Conread position: | 609-815 |
| Cow position: | chr11:33044661-33044455 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 111, 56 |
| Conread position: | 609-815 |
| Cow position: | chr11:37492188-37491983 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 609-815 |
| Cow position: | chr11:39833210-39833417 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 609-815 |
| Cow position: | chr11:50029239-50029034 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 111 |
| Conread position: | 609-816 |
| Cow position: | chr11:7113057-7113262 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 609-816 |
| Cow position: | chr11:9659938-9659733 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 108, 46 |
| Conread position: | 609-816 |
| Cow position: | chr11:15998354-15998561 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 64, 80 |
| Conread position: | 609-816 |
| Cow position: | chr11:21466532-21466743 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-816 |
| Cow position: | chr11:25527037-25527239 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 609-816 |
| Cow position: | chr11:32071570-32071776 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 610-773 |
| Cow position: | chr11:11987577-11987744 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-806 |
| Cow position: | chr11:12358965-12358765 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-806 |
| Cow position: | chr11:44157776-44157579 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 610-807 |
| Cow position: | chr11:23876761-23876962 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 168 |
| Conread position: | 610-814 |
| Cow position: | chr11:10846901-10847109 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr11:19103029-19102822 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 610-814 |
| Cow position: | chr11:20921289-20921081 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 610-814 |
| Cow position: | chr11:26125471-26125268 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 610-814 |
| Cow position: | chr11:29669172-29668964 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr11:38835960-38835752 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr11:41171236-41171028 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr11:43515174-43514966 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 610-814 |
| Cow position: | chr11:58133829-58134034 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 610-814 |
| Cow position: | chr11:71329101-71329308 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr11:85394352-85394146 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-815 |
| Cow position: | chr11:4271410-4271204 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 610-815 |
| Cow position: | chr11:8896098-8896304 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 610-816 |
| Cow position: | chr11:7687378-7687584 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 107, 56 |
| Conread position: | 610-816 |
| Cow position: | chr11:8262239-8262033 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 610-816 |
| Cow position: | chr11:11126376-11126581 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 610-816 |
| Cow position: | chr11:12351606-12351403 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 63, 75 |
| Conread position: | 610-816 |
| Cow position: | chr11:54209084-54209285 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 107, 40 |
| Conread position: | 610-816 |
| Cow position: | chr11:77235218-77235432 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 611-806 |
| Cow position: | chr11:37477658-37477463 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 611-814 |
| Cow position: | chr11:3492470-3492675 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 611-814 |
| Cow position: | chr11:9736494-9736288 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 611-815 |
| Cow position: | chr11:44895559-44895356 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 68, 108 |
| Conread position: | 611-816 |
| Cow position: | chr11:8282553-8282743 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 33 |
| Conread position: | 613-795 |
| Cow position: | chr11:44861065-44860879 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 613-802 |
| Cow position: | chr11:67449957-67450150 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-806 |
| Cow position: | chr11:53287995-53287798 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-815 |
| Cow position: | chr11:1496609-1496407 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 613-815 |
| Cow position: | chr11:9157961-9157760 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 613-816 |
| Cow position: | chr11:30304709-30304904 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 613-816 |
| Cow position: | chr11:34020368-34020568 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 613-816 |
| Cow position: | chr11:87127305-87127510 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 619-805 |
| Cow position: | chr11:77729060-77728872 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 619-814 |
| Cow position: | chr11:31414771-31414575 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 620-806 |
| Cow position: | chr11:67847101-67846912 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 620-816 |
| Cow position: | chr11:42428806-42429001 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 90 |
| Conread position: | 621-815 |
| Cow position: | chr11:43731888-43732076 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 622-806 |
| Cow position: | chr11:17108217-17108029 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr11:19064781-19064593 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr11:72110492-72110304 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr11:28230280-28230084 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr11:32450336-32450532 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr11:36744709-36744516 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 95, 36 |
| Conread position: | 622-814 |
| Cow position: | chr11:57628578-57628382 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr11:61401568-61401375 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 622-814 |
| Cow position: | chr11:63660113-63659917 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 625-780 |
| Cow position: | chr11:28063162-28063321 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 639-814 |
| Cow position: | chr11:15983109-15983288 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 648-816 |
| Cow position: | chr11:44496103-44495931 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 651-814 |
| Cow position: | chr11:8244206-8244371 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 656-808 |
| Cow position: | chr11:19220263-19220107 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 667-816 |
| Cow position: | chr11:10049639-10049786 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.