Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 323-604 |
| Cow position: | chr13:33279645-33279358 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 609-781 |
| Cow position: | chr13:3338363-3338541 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 175 |
| Conread position: | 609-814 |
| Cow position: | chr13:47859975-47860178 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 609-815 |
| Cow position: | chr13:3276679-3276889 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-815 |
| Cow position: | chr13:34143135-34142926 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 110, 57 |
| Conread position: | 609-815 |
| Cow position: | chr13:34936660-34936876 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 609-816 |
| Cow position: | chr13:2232181-2232392 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-816 |
| Cow position: | chr13:20542840-20542636 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 609-816 |
| Cow position: | chr13:33928037-33927830 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 110, 54 |
| Conread position: | 609-816 |
| Cow position: | chr13:34187166-34186955 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 609-816 |
| Cow position: | chr13:34868291-34868505 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 609-816 |
| Cow position: | chr13:54284111-54284313 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 110, 40 |
| Conread position: | 610-788 |
| Cow position: | chr13:33336800-33336625 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 610-814 |
| Cow position: | chr13:1593632-1593423 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 610-814 |
| Cow position: | chr13:15520991-15520785 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 61, 168 |
| Conread position: | 610-814 |
| Cow position: | chr13:15924860-15924654 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr13:31612813-31612605 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 610-814 |
| Cow position: | chr13:32738296-32738090 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 610-814 |
| Cow position: | chr13:35756763-35756971 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 610-815 |
| Cow position: | chr13:2306026-2306234 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 610-816 |
| Cow position: | chr13:34326153-34325943 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 611-809 |
| Cow position: | chr13:21840671-21840470 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 196 |
| Conread position: | 611-814 |
| Cow position: | chr13:32986523-32986320 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 612-814 |
| Cow position: | chr13:9044035-9044241 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 612-815 |
| Cow position: | chr13:46732826-46732623 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 613-795 |
| Cow position: | chr13:3058467-3058281 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 613-795 |
| Cow position: | chr13:34911840-34911661 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 106, 34 |
| Conread position: | 613-806 |
| Cow position: | chr13:2297273-2297076 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-814 |
| Cow position: | chr13:17308006-17308205 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 613-816 |
| Cow position: | chr13:33825202-33824997 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 613-816 |
| Cow position: | chr13:62328056-62327852 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 60, 186 |
| Conread position: | 616-814 |
| Cow position: | chr13:34042836-34042634 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 619-816 |
| Cow position: | chr13:2908912-2908718 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 619-816 |
| Cow position: | chr13:30657429-30657236 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 619-816 |
| Cow position: | chr13:34692694-34692895 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 622-766 |
| Cow position: | chr13:13046285-13046142 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 622-777 |
| Cow position: | chr13:6668589-6668430 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 622-806 |
| Cow position: | chr13:30245199-30245011 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 622-806 |
| Cow position: | chr13:50109001-50109184 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 622-808 |
| Cow position: | chr13:31734546-31734357 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 622-814 |
| Cow position: | chr13:4872614-4872807 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 622-816 |
| Cow position: | chr13:31832143-31832332 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 623-816 |
| Cow position: | chr13:56730743-56730551 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 631-814 |
| Cow position: | chr13:49973226-49973413 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 637-815 |
| Cow position: | chr13:21130879-21131058 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 648-807 |
| Cow position: | chr13:60703972-60703808 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 135 |
| Conread position: | 648-808 |
| Cow position: | chr13:30237736-30237898 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.