Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 123-600 |
| Cow position: | chr14:49045208-49045677 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 596-806 |
| Cow position: | chr14:1500417-1500628 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 6 |
| Conread position: | 596-814 |
| Cow position: | chr14:15277191-15276973 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 6 |
| Conread position: | 608-801 |
| Cow position: | chr14:47921403-47921599 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 76, 167 |
| Conread position: | 609-750 |
| Cow position: | chr14:44780518-44780376 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 609-751 |
| Cow position: | chr14:34774993-34775136 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 609-763 |
| Cow position: | chr14:37414550-37414392 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-789 |
| Cow position: | chr14:40339108-40339288 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 609-804 |
| Cow position: | chr14:23529601-23529413 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 609-806 |
| Cow position: | chr14:47589271-47589473 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 609-807 |
| Cow position: | chr14:45712577-45712377 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-813 |
| Cow position: | chr14:48704000-48704204 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 15 |
| Conread position: | 609-814 |
| Cow position: | chr14:37223300-37223509 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 609-815 |
| Cow position: | chr14:31607520-31607321 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 109, 54 |
| Conread position: | 609-815 |
| Cow position: | chr14:33235401-33235600 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 111, 53 |
| Conread position: | 609-815 |
| Cow position: | chr14:43034479-43034276 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 609-815 |
| Cow position: | chr14:47654149-47654353 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 609-816 |
| Cow position: | chr14:11467997-11468198 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 609-816 |
| Cow position: | chr14:13660589-13660380 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 609-816 |
| Cow position: | chr14:22018803-22019007 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 609-816 |
| Cow position: | chr14:36967657-36967863 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 609-816 |
| Cow position: | chr14:44376834-44377044 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 609-816 |
| Cow position: | chr14:44421956-44422164 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 609-816 |
| Cow position: | chr14:44782858-44782646 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 609-816 |
| Cow position: | chr14:46084023-46084233 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 610-781 |
| Cow position: | chr14:11154754-11154582 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 61, 118 |
| Conread position: | 610-802 |
| Cow position: | chr14:13302430-13302625 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 610-806 |
| Cow position: | chr14:5528466-5528660 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 53 |
| Conread position: | 610-806 |
| Cow position: | chr14:7471775-7471973 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 61, 118 |
| Conread position: | 610-806 |
| Cow position: | chr14:16273897-16273697 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr14:13622212-13622005 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 610-814 |
| Cow position: | chr14:16920283-16920082 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 142, 77 |
| Conread position: | 610-814 |
| Cow position: | chr14:17001656-17001448 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 610-814 |
| Cow position: | chr14:20781855-20782063 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 610-814 |
| Cow position: | chr14:22032283-22032079 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 121 |
| Conread position: | 610-814 |
| Cow position: | chr14:28994456-28994248 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-815 |
| Cow position: | chr14:23260532-23260322 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 610-815 |
| Cow position: | chr14:40170275-40170078 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 107, 64 |
| Conread position: | 610-815 |
| Cow position: | chr14:43552819-43553028 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 610-816 |
| Cow position: | chr14:23690825-23690617 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 63, 196 |
| Conread position: | 610-816 |
| Cow position: | chr14:38532899-38532686 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 611-806 |
| Cow position: | chr14:29048498-29048303 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 612-815 |
| Cow position: | chr14:35928582-35928783 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 613-806 |
| Cow position: | chr14:23256763-23256958 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 107, 54 |
| Conread position: | 613-813 |
| Cow position: | chr14:749971-750175 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 613-814 |
| Cow position: | chr14:33394374-33394170 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 177 |
| Conread position: | 613-814 |
| Cow position: | chr14:45672643-45672438 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 613-815 |
| Cow position: | chr14:44225816-44226014 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 613-816 |
| Cow position: | chr14:30707266-30707059 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 613-816 |
| Cow position: | chr14:44130329-44130527 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 43 |
| Conread position: | 616-816 |
| Cow position: | chr14:45767411-45767615 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 619-802 |
| Cow position: | chr14:44685456-44685643 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 619-808 |
| Cow position: | chr14:7831131-7830939 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 619-809 |
| Cow position: | chr14:47623977-47624171 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 619-814 |
| Cow position: | chr14:48254903-48254704 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 619-816 |
| Cow position: | chr14:14309656-14309464 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 619-816 |
| Cow position: | chr14:42151732-42151931 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 619-816 |
| Cow position: | chr14:44856017-44855818 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 622-802 |
| Cow position: | chr14:35387719-35387537 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 622-806 |
| Cow position: | chr14:9044976-9045164 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr14:17492046-17491858 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 622-814 |
| Cow position: | chr14:30585525-30585338 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 65 |
| Conread position: | 622-816 |
| Cow position: | chr14:45160276-45160473 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 622-816 |
| Cow position: | chr14:45850639-45850832 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 623-815 |
| Cow position: | chr14:13272670-13272866 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 631-814 |
| Cow position: | chr14:23901381-23901194 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 635-816 |
| Cow position: | chr14:50134496-50134677 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 97 |
| Conread position: | 636-814 |
| Cow position: | chr14:2283764-2283946 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 152 |
| Conread position: | 636-814 |
| Cow position: | chr14:27992873-27992701 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 663-808 |
| Cow position: | chr14:38146064-38146208 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 682-816 |
| Cow position: | chr14:31887150-31887285 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 686-816 |
| Cow position: | chr14:44580397-44580530 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 34, 94 |
Show alignments to all cow chromosomes.