Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 121-609 |
| Cow position: | chr16:27715318-27714835 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 56 |
| Conread position: | 228-615 |
| Cow position: | chr16:47780325-47780697 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 236-606 |
| Cow position: | chr16:52816961-52816583 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 267 |
| Conread position: | 264-609 |
| Cow position: | chr16:31717815-31717478 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 604-816 |
| Cow position: | chr16:49257519-49257321 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 608-806 |
| Cow position: | chr16:56551180-56551379 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 65, 156 |
| Conread position: | 609-783 |
| Cow position: | chr16:19713795-19713619 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 609-806 |
| Cow position: | chr16:7905696-7905897 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 609-813 |
| Cow position: | chr16:36362295-36362098 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 609-814 |
| Cow position: | chr16:1430280-1430484 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 123 |
| Conread position: | 609-814 |
| Cow position: | chr16:16687922-16688131 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 609-814 |
| Cow position: | chr16:47562744-47562947 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 609-815 |
| Cow position: | chr16:36232552-36232343 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 609-815 |
| Cow position: | chr16:42740369-42740157 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 112 |
| Conread position: | 609-815 |
| Cow position: | chr16:51685496-51685703 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 111, 39 |
| Conread position: | 609-815 |
| Cow position: | chr16:55111794-55111586 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 609-816 |
| Cow position: | chr16:5651804-5652012 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 64, 159 |
| Conread position: | 609-816 |
| Cow position: | chr16:10808219-10808419 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 108, 57 |
| Conread position: | 609-816 |
| Cow position: | chr16:25157164-25156958 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 109, 63 |
| Conread position: | 609-816 |
| Cow position: | chr16:29676253-29676046 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 64, 177 |
| Conread position: | 609-816 |
| Cow position: | chr16:36282451-36282663 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 609-816 |
| Cow position: | chr16:44965111-44965315 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 609-816 |
| Cow position: | chr16:52815572-52815372 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 609-816 |
| Cow position: | chr16:54647379-54647590 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 610-748 |
| Cow position: | chr16:9777185-9777325 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-770 |
| Cow position: | chr16:2728259-2728097 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 610-777 |
| Cow position: | chr16:56320891-56321062 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr16:407978-407774 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 610-814 |
| Cow position: | chr16:1568396-1568194 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 610-814 |
| Cow position: | chr16:2411916-2411710 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr16:5918538-5918746 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr16:8817051-8816844 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 610-814 |
| Cow position: | chr16:15491761-15491969 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr16:15565804-15566010 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 161 |
| Conread position: | 610-814 |
| Cow position: | chr16:24881633-24881430 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 610-814 |
| Cow position: | chr16:25458416-25458211 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 610-814 |
| Cow position: | chr16:26662804-26663009 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 610-814 |
| Cow position: | chr16:27734751-27734543 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr16:28472042-28471834 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 61, 127 |
| Conread position: | 610-814 |
| Cow position: | chr16:29046074-29046282 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 610-814 |
| Cow position: | chr16:31592853-31592644 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 610-816 |
| Cow position: | chr16:16276451-16276244 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 189 |
| Conread position: | 610-816 |
| Cow position: | chr16:18688074-18687860 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 610-816 |
| Cow position: | chr16:23253450-23253242 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-816 |
| Cow position: | chr16:43898215-43898005 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 611-815 |
| Cow position: | chr16:11111881-11111677 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 611-816 |
| Cow position: | chr16:23670536-23670332 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 611-816 |
| Cow position: | chr16:49236060-49235853 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 62, 179 |
| Conread position: | 612-777 |
| Cow position: | chr16:7676638-7676474 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 613-802 |
| Cow position: | chr16:39820695-39820884 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 613-814 |
| Cow position: | chr16:5660917-5661121 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 58, 174 |
| Conread position: | 613-814 |
| Cow position: | chr16:6942679-6942884 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-814 |
| Cow position: | chr16:25187698-25187903 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 613-814 |
| Cow position: | chr16:32605884-32606089 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-816 |
| Cow position: | chr16:25084679-25084884 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 619-753 |
| Cow position: | chr16:50875242-50875104 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 619-808 |
| Cow position: | chr16:25152839-25153030 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 98, 25 |
| Conread position: | 619-814 |
| Cow position: | chr16:15183869-15184064 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 619-814 |
| Cow position: | chr16:40297113-40296914 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 619-816 |
| Cow position: | chr16:6549459-6549260 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 619-816 |
| Cow position: | chr16:11052235-11052424 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 619-816 |
| Cow position: | chr16:20255248-20255047 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 622-806 |
| Cow position: | chr16:28171293-28171107 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 622-808 |
| Cow position: | chr16:31814-32003 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 628-816 |
| Cow position: | chr16:28438710-28438521 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 630-816 |
| Cow position: | chr16:40887181-40886995 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 631-813 |
| Cow position: | chr16:836105-836289 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 633-816 |
| Cow position: | chr16:5888559-5888746 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 643-806 |
| Cow position: | chr16:34529412-34529577 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 146 |
| Conread position: | 650-795 |
| Cow position: | chr16:26650528-26650676 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 651-814 |
| Cow position: | chr16:5483416-5483583 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 651-816 |
| Cow position: | chr16:335396-335558 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 668-816 |
| Cow position: | chr16:31376143-31375998 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 672-813 |
| Cow position: | chr16:24155326-24155181 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 672-816 |
| Cow position: | chr16:4441990-4442138 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.