Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 196-557 |
| Cow position: | chr18:35287143-35287504 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 254-521 |
| Cow position: | chr18:46847761-46847496 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 352-550 |
| Cow position: | chr18:42073256-42073050 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 586-816 |
| Cow position: | chr18:54044887-54044655 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 608-816 |
| Cow position: | chr18:16660168-16659957 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 127 |
| Conread position: | 609-785 |
| Cow position: | chr18:33268678-33268859 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-785 |
| Cow position: | chr18:35335326-35335506 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-788 |
| Cow position: | chr18:16877323-16877497 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 108, 46 |
| Conread position: | 609-794 |
| Cow position: | chr18:54269307-54269492 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 108, 54 |
| Conread position: | 609-801 |
| Cow position: | chr18:19540038-19539842 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 113 |
| Conread position: | 609-806 |
| Cow position: | chr18:32651833-32652033 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 609-806 |
| Cow position: | chr18:39748419-39748614 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 609-815 |
| Cow position: | chr18:1520966-1521176 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 60, 194 |
| Conread position: | 609-815 |
| Cow position: | chr18:18897330-18897543 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 145 |
| Conread position: | 609-815 |
| Cow position: | chr18:44601377-44601585 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 111, 62 |
| Conread position: | 609-815 |
| Cow position: | chr18:53785678-53785884 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 609-816 |
| Cow position: | chr18:2019846-2019638 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 609-816 |
| Cow position: | chr18:17992724-17992515 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 609-816 |
| Cow position: | chr18:33358705-33358915 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 609-816 |
| Cow position: | chr18:37599690-37599481 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 609-816 |
| Cow position: | chr18:43147087-43146878 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-816 |
| Cow position: | chr18:45958531-45958731 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 111, 44 |
| Conread position: | 609-816 |
| Cow position: | chr18:51310420-51310628 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 610-794 |
| Cow position: | chr18:16176768-16176587 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 610-806 |
| Cow position: | chr18:16078541-16078737 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 610-814 |
| Cow position: | chr18:23797489-23797693 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 610-814 |
| Cow position: | chr18:33953730-33953522 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 178 |
| Conread position: | 610-814 |
| Cow position: | chr18:36508171-36508379 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr18:41840987-41840779 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-815 |
| Cow position: | chr18:16393803-16393597 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 63, 171 |
| Conread position: | 611-814 |
| Cow position: | chr18:27986868-27987073 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 612-814 |
| Cow position: | chr18:28974060-28973857 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 110, 43 |
| Conread position: | 613-814 |
| Cow position: | chr18:11275259-11275060 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 613-814 |
| Cow position: | chr18:44621600-44621805 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-814 |
| Cow position: | chr18:51660258-51660463 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-815 |
| Cow position: | chr18:23944530-23944328 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 60, 186 |
| Conread position: | 619-808 |
| Cow position: | chr18:51257830-51258017 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 619-816 |
| Cow position: | chr18:6869408-6869209 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 619-816 |
| Cow position: | chr18:32293622-32293816 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 619-816 |
| Cow position: | chr18:43200913-43201105 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 98, 36 |
| Conread position: | 620-789 |
| Cow position: | chr18:26378793-26378626 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 622-788 |
| Cow position: | chr18:51464621-51464457 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 622-806 |
| Cow position: | chr18:55089075-55088887 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 622-814 |
| Cow position: | chr18:22602337-22602533 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr18:47741868-47742064 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr18:51689477-51689672 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 622-816 |
| Cow position: | chr18:2887173-2886973 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 622-816 |
| Cow position: | chr18:48221727-48221925 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 623-778 |
| Cow position: | chr18:40345472-40345314 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 629-815 |
| Cow position: | chr18:29946052-29946233 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 631-816 |
| Cow position: | chr18:54171984-54171797 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 633-814 |
| Cow position: | chr18:22869616-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 644-816 |
| Cow position: | chr18:35288402-35288579 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 647-806 |
| Cow position: | chr18:51341561-51341724 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 647-816 |
| Cow position: | chr18:29763332-29763503 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 648-815 |
| Cow position: | chr18:9186890-9186720 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 86 |
Show alignments to all cow chromosomes.