Cow genome map

Conread name: Ss1.1-Lng1-LNG010014H12.5

Conread position: 15-613
Cow position: chr19:563006-562420 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 42

Conread position: 209-609
Cow position: chr19:36476264-36476667 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 253
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 102, 86

Conread position: 597-815
Cow position: chr19:20111391-20111177 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 123, 68

Conread position: 609-763
Cow position: chr19:1031950-1032105 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 47

Conread position: 609-782
Cow position: chr19:261276-261455 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 64, 0

Conread position: 609-782
Cow position: chr19:35376399-35376577 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 64, 31

Conread position: 609-808
Cow position: chr19:359661-359460 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 79, 21

Conread position: 609-814
Cow position: chr19:30755018-30755226 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 52, 185

Conread position: 609-815
Cow position: chr19:4252516-4252307 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 67, 44

Conread position: 609-815
Cow position: chr19:35979110-35979315 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 108, 63

Conread position: 609-816
Cow position: chr19:416494-416704 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 62, 198

Conread position: 609-816
Cow position: chr19:561664-561453 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 64, 0

Conread position: 609-816
Cow position: chr19:4532902-4532700 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 64, 51

Conread position: 609-816
Cow position: chr19:28376372-28376574 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 64, 139

Conread position: 609-816
Cow position: chr19:30372124-30372334 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 64, 35

Conread position: 610-777
Cow position: chr19:7405601-7405437 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 56

Conread position: 610-806
Cow position: chr19:203806-204003 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 108, 0

Conread position: 610-813
Cow position: chr19:7488155-7488362 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr19:893761-893563 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 112, 39

Conread position: 610-814
Cow position: chr19:4385327-4385531 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 125

Conread position: 610-814
Cow position: chr19:10672464-10672256 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 61, 178

Conread position: 610-814
Cow position: chr19:55078588-55078796 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 62, 0

Conread position: 610-815
Cow position: chr19:536720-536923 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 110, 24

Conread position: 610-816
Cow position: chr19:20125466-20125671 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 112, 43

Conread position: 610-816
Cow position: chr19:39688386-39688581 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 108, 120

Conread position: 612-816
Cow position: chr19:32223584-32223387 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 107, 38

Conread position: 613-805
Cow position: chr19:32212222-32212029 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 104, 45

Conread position: 613-806
Cow position: chr19:40852585-40852388 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 616-766
Cow position: chr19:378024-377873 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 57, 44

Conread position: 616-816
Cow position: chr19:32665381-32665582 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 57, 74

Conread position: 617-814
Cow position: chr19:43143568-43143766 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 54, 34

Conread position: 619-813
Cow position: chr19:39390372-39390566 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 103, 35

Conread position: 619-815
Cow position: chr19:34276-34471 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 57, 15

Conread position: 619-816
Cow position: chr19:39546479-39546680 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 41

Conread position: 622-774
Cow position: chr19:52152407-52152251 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 622-806
Cow position: chr19:772453-772641 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 622-806
Cow position: chr19:28593131-28593319 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 0

Conread position: 622-814
Cow position: chr19:28581800-28581606 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 20, 7

Conread position: 622-814
Cow position: chr19:32193431-32193627 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 622-814
Cow position: chr19:32244534-32244734 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 622-815
Cow position: chr19:42299642-42299448 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 96

Conread position: 622-816
Cow position: chr19:31341563-31341758 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 29

Conread position: 624-816
Cow position: chr19:29209417-29209613 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 49, 0

Conread position: 645-814
Cow position: chr19:33873304-33873477 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 650-814
Cow position: chr19:37778-37946 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 672-816
Cow position: chr19:350378-350231 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 672-816
Cow position: chr19:6553518-6553663 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 123
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.