Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 35-348 |
| Cow position: | chr29:30810039-30810352 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 297-608 |
| Cow position: | chr29:30810230-30810525 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 111, 39 |
| Conread position: | 608-815 |
| Cow position: | chr29:9855164-9854956 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 36 |
| Conread position: | 608-815 |
| Cow position: | chr29:39313836-39313626 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 123 |
| Conread position: | 609-786 |
| Cow position: | chr29:12796710-12796530 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 609-806 |
| Cow position: | chr29:40503224-40503023 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 609-808 |
| Cow position: | chr29:15950424-15950226 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 609-813 |
| Cow position: | chr29:30811290-30811494 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 609-814 |
| Cow position: | chr29:14013227-14013435 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 171 |
| Conread position: | 609-814 |
| Cow position: | chr29:14073184-14072976 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 171 |
| Conread position: | 609-814 |
| Cow position: | chr29:26165067-26164859 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 110, 172 |
| Conread position: | 609-815 |
| Cow position: | chr29:11855354-11855562 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 57 |
| Conread position: | 609-815 |
| Cow position: | chr29:19893520-19893728 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 609-816 |
| Cow position: | chr29:1715006-1715212 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 192, 44 |
| Conread position: | 609-816 |
| Cow position: | chr29:2368144-2367934 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 61, 171 |
| Conread position: | 609-816 |
| Cow position: | chr29:27041005-27040798 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 108, 56 |
| Conread position: | 609-816 |
| Cow position: | chr29:32640540-32640744 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 114, 40 |
| Conread position: | 610-795 |
| Cow position: | chr29:2841609-2841424 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 109, 55 |
| Conread position: | 610-806 |
| Cow position: | chr29:48720-48521 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-806 |
| Cow position: | chr29:7431460-7431260 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 610-806 |
| Cow position: | chr29:21246324-21246525 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 610-814 |
| Cow position: | chr29:2099600-2099808 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 610-814 |
| Cow position: | chr29:6266738-6266530 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 610-814 |
| Cow position: | chr29:10824203-10823992 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 610-814 |
| Cow position: | chr29:19652864-19653068 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 61, 168 |
| Conread position: | 610-814 |
| Cow position: | chr29:39079950-39079742 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr29:43322315-43322523 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-815 |
| Cow position: | chr29:34609189-34608987 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 109, 20 |
| Conread position: | 610-816 |
| Cow position: | chr29:104335-104538 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 611-806 |
| Cow position: | chr29:16109486-16109683 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 166 |
| Conread position: | 611-814 |
| Cow position: | chr29:15895091-15894887 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 109, 47 |
| Conread position: | 612-814 |
| Cow position: | chr29:10648487-10648288 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 613-802 |
| Cow position: | chr29:610852-610661 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 613-814 |
| Cow position: | chr29:27250576-27250371 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-816 |
| Cow position: | chr29:16769891-16770094 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 60, 119 |
| Conread position: | 616-816 |
| Cow position: | chr29:11049046-11049246 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 101, 56 |
| Conread position: | 618-813 |
| Cow position: | chr29:4635202-4635004 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 162 |
| Conread position: | 619-805 |
| Cow position: | chr29:5957368-5957557 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 619-814 |
| Cow position: | chr29:20250924-20251123 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 619-814 |
| Cow position: | chr29:24198855-24198658 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 619-816 |
| Cow position: | chr29:13853256-13853058 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 619-816 |
| Cow position: | chr29:17662686-17662889 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 619-816 |
| Cow position: | chr29:21427290-21427089 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 619-816 |
| Cow position: | chr29:43366232-43366034 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 622-806 |
| Cow position: | chr29:31121573-31121761 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr29:7840564-7840760 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr29:15969380-15969187 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 622-814 |
| Cow position: | chr29:28060898-28060701 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr29:31180891-31181087 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 622-814 |
| Cow position: | chr29:35296645-35296838 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 623-772 |
| Cow position: | chr29:2750618-2750472 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 124, 33 |
| Conread position: | 625-816 |
| Cow position: | chr29:35196447-35196638 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 635-816 |
| Cow position: | chr29:10848329-10848143 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 38, 5 |
| Conread position: | 640-816 |
| Cow position: | chr29:21543580-21543399 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 687-815 |
| Cow position: | chr29:11841500-11841628 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.