Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 609-789 |
| Cow position: | chr4:17470379-17470562 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 609-791 |
| Cow position: | chr4:27442566-27442753 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 609-796 |
| Cow position: | chr4:46663681-46663865 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 609-803 |
| Cow position: | chr4:58883198-58883007 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 46 |
| Conread position: | 609-805 |
| Cow position: | chr4:28830515-28830716 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 609-806 |
| Cow position: | chr4:3125258-3125459 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 609-814 |
| Cow position: | chr4:44724560-44724769 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 609-815 |
| Cow position: | chr4:11383888-11384097 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 609-815 |
| Cow position: | chr4:39272462-39272253 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 609-815 |
| Cow position: | chr4:40824766-40824558 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 111, 70 |
| Conread position: | 609-816 |
| Cow position: | chr4:10408258-10408469 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-816 |
| Cow position: | chr4:11393858-11393649 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 610-774 |
| Cow position: | chr4:1371532-1371369 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 610-802 |
| Cow position: | chr4:45049817-45049624 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 98, 52 |
| Conread position: | 610-806 |
| Cow position: | chr4:3961073-3961270 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 610-806 |
| Cow position: | chr4:4905632-4905832 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:5879656-5879856 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 107, 46 |
| Conread position: | 610-814 |
| Cow position: | chr4:6490868-6490662 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:12241741-12241533 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:13492054-13492262 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:16359369-16359569 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 134, 46 |
| Conread position: | 610-814 |
| Cow position: | chr4:17926776-17926569 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 186 |
| Conread position: | 610-814 |
| Cow position: | chr4:18516374-18516582 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:29532236-29532028 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:31668794-31669000 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 610-814 |
| Cow position: | chr4:33493290-33493498 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:36895852-36896060 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:41330918-41331127 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:43320158-43319950 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr4:43880587-43880795 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-815 |
| Cow position: | chr4:969562-969351 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 610-815 |
| Cow position: | chr4:1050142-1049933 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-815 |
| Cow position: | chr4:6215073-6214865 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 611-771 |
| Cow position: | chr4:1464441-1464287 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 106, 50 |
| Conread position: | 612-806 |
| Cow position: | chr4:32211647-32211845 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 613-802 |
| Cow position: | chr4:101448-101255 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 613-806 |
| Cow position: | chr4:157997-158193 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 613-806 |
| Cow position: | chr4:528474-528671 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 177 |
| Conread position: | 613-806 |
| Cow position: | chr4:602478-602672 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 613-806 |
| Cow position: | chr4:6269147-6268950 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-806 |
| Cow position: | chr4:13547509-13547706 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 613-806 |
| Cow position: | chr4:30307972-30307774 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 613-814 |
| Cow position: | chr4:18425036-18424834 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 613-816 |
| Cow position: | chr4:21338505-21338304 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 102, 59 |
| Conread position: | 618-753 |
| Cow position: | chr4:60630762-60630632 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 618-753 |
| Cow position: | chr4:60673391-60673521 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 618-816 |
| Cow position: | chr4:51044394-51044203 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 619-799 |
| Cow position: | chr4:33630536-33630719 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 619-814 |
| Cow position: | chr4:24445712-24445515 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 159 |
| Conread position: | 619-814 |
| Cow position: | chr4:26887356-26887159 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 619-816 |
| Cow position: | chr4:12608017-12607817 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 619-816 |
| Cow position: | chr4:66179499-66179300 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 622-806 |
| Cow position: | chr4:16056097-16056282 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 622-814 |
| Cow position: | chr4:355404-355596 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 102, 33 |
| Conread position: | 622-814 |
| Cow position: | chr4:1931130-1930937 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 622-814 |
| Cow position: | chr4:23114686-23114490 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr4:47764680-47764484 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr4:65224044-65223848 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-816 |
| Cow position: | chr4:47718119-47717918 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 624-816 |
| Cow position: | chr4:66925496-66925689 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 170 |
| Conread position: | 644-813 |
| Cow position: | chr4:57979143-57979316 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 644-816 |
| Cow position: | chr4:8598626-8598460 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 644-816 |
| Cow position: | chr4:11618374-11618545 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 645-814 |
| Cow position: | chr4:33073584-33073411 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 651-816 |
| Cow position: | chr4:21564670-21564832 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 656-806 |
| Cow position: | chr4:27332967-27333122 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.