Cow genome map

Conread name: Ss1.1-Lng1-LNG010014H12.5

Conread position: 116-460
Cow position: chr5:35279554-35279899 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 163, 73

Conread position: 302-608
Cow position: chr5:27487744-27488047 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 191
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 279, 77

Conread position: 327-614
Cow position: chr5:29438029-29437735 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 77, 134

Conread position: 607-815
Cow position: chr5:26508014-26508226 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 66, 102

Conread position: 608-815
Cow position: chr5:26054338-26054545 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 65, 103

Conread position: 609-796
Cow position: chr5:7811975-7811789 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 55

Conread position: 609-799
Cow position: chr5:41551353-41551162 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 31, 36

Conread position: 609-806
Cow position: chr5:27569722-27569927 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 161
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 609-806
Cow position: chr5:41529997-41529799 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 50

Conread position: 609-808
Cow position: chr5:61020268-61020075 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 106, 51

Conread position: 609-809
Cow position: chr5:29436345-29436164 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 609-815
Cow position: chr5:28570270-28570476 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 54, 39

Conread position: 609-815
Cow position: chr5:51771773-51771564 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 64, 57

Conread position: 609-815
Cow position: chr5:56858125-56857914 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 609-815
Cow position: chr5:61273596-61273400 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 115, 53

Conread position: 609-816
Cow position: chr5:14346802-14346596 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 78, 111

Conread position: 609-816
Cow position: chr5:23227832-23228038 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 169
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 64, 55

Conread position: 609-816
Cow position: chr5:23767871-23768075 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 7

Conread position: 609-816
Cow position: chr5:25207167-25206959 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 110, 46

Conread position: 609-816
Cow position: chr5:29123224-29123019 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 63, 0

Conread position: 609-816
Cow position: chr5:34202520-34202722 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 64, 27

Conread position: 609-816
Cow position: chr5:39165225-39165015 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 67, 48

Conread position: 609-816
Cow position: chr5:49181853-49182058 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 118, 53

Conread position: 609-816
Cow position: chr5:49593887-49593674 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 56, 166

Conread position: 610-750
Cow position: chr5:59282335-59282477 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 610-770
Cow position: chr5:54793045-54792881 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 610-786
Cow position: chr5:23716375-23716196 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 66, 46

Conread position: 610-806
Cow position: chr5:3504674-3504474 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 610-806
Cow position: chr5:34696156-34696357 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 610-813
Cow position: chr5:4068563-4068769 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 60, 0

Conread position: 610-814
Cow position: chr5:1342223-1342013 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 610-814
Cow position: chr5:2914023-2914231 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 168

Conread position: 610-814
Cow position: chr5:30578895-30579102 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 195

Conread position: 610-814
Cow position: chr5:37731918-37732126 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr5:48809140-48808935 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 66, 41

Conread position: 610-814
Cow position: chr5:49119705-49119501 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 29, 35

Conread position: 610-814
Cow position: chr5:57482974-57482766 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr5:64782444-64782238 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 61, 0

Conread position: 610-815
Cow position: chr5:26090253-26090049 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 63, 121

Conread position: 610-816
Cow position: chr5:2430559-2430350 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 63, 9

Conread position: 610-816
Cow position: chr5:32945453-32945657 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 63, 121

Conread position: 611-806
Cow position: chr5:4019625-4019426 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 60, 0

Conread position: 611-814
Cow position: chr5:32772055-32772262 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 60, 0

Conread position: 611-815
Cow position: chr5:6188147-6188348 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 137, 45

Conread position: 611-815
Cow position: chr5:76123977-76123770 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 613-802
Cow position: chr5:35299639-35299832 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 613-805
Cow position: chr5:10844299-10844103 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 613-806
Cow position: chr5:31706150-31706348 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 613-814
Cow position: chr5:2530846-2531051 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 58, 178

Conread position: 613-814
Cow position: chr5:14379738-14379943 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 58, 0

Conread position: 613-814
Cow position: chr5:46663577-46663779 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 58, 75

Conread position: 613-814
Cow position: chr5:48468701-48468496 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 58, 0

Conread position: 613-814
Cow position: chr5:54932642-54932437 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 177

Conread position: 616-816
Cow position: chr5:30088140-30087939 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 101, 56

Conread position: 618-816
Cow position: chr5:32674155-32673960 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 100, 49

Conread position: 619-765
Cow position: chr5:9686832-9686682 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 619-778
Cow position: chr5:31204023-31203859 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 35, 24

Conread position: 619-807
Cow position: chr5:28031067-28031256 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 54, 20

Conread position: 619-814
Cow position: chr5:10918379-10918578 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 619-814
Cow position: chr5:26769392-26769591 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 619-816
Cow position: chr5:45699862-45700066 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 50, 90

Conread position: 621-816
Cow position: chr5:27488603-27488802 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 622-786
Cow position: chr5:24329884-24330051 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 33

Conread position: 622-790
Cow position: chr5:59144366-59144538 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 0

Conread position: 622-806
Cow position: chr5:3964055-3964243 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 622-806
Cow position: chr5:47831520-47831332 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 622-813
Cow position: chr5:28006796-28006983 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 51, 7

Conread position: 622-814
Cow position: chr5:18665546-18665742 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 622-814
Cow position: chr5:24576498-24576694 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 49, 166

Conread position: 622-814
Cow position: chr5:26079634-26079438 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 622-814
Cow position: chr5:27909683-27909490 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 29

Conread position: 622-814
Cow position: chr5:29042096-29042292 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 49, 0

Conread position: 622-814
Cow position: chr5:44459067-44459263 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 49, 169

Conread position: 622-814
Cow position: chr5:45182517-45182329 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 95, 34

Conread position: 622-814
Cow position: chr5:46739000-46738804 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 622-814
Cow position: chr5:53714841-53715034 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 97, 36

Conread position: 622-814
Cow position: chr5:58195587-58195782 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 84

Conread position: 622-814
Cow position: chr5:59060209-59060401 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 95, 29

Conread position: 622-814
Cow position: chr5:59481839-59482035 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 622-815
Cow position: chr5:27683180-27682988 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 99, 26

Conread position: 622-815
Cow position: chr5:57366432-57366240 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 18

Conread position: 622-816
Cow position: chr5:32733660-32733470 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 109

Conread position: 643-802
Cow position: chr5:18653613-18653775 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 33, 143

Conread position: 651-814
Cow position: chr5:6589408-6589241 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 666-815
Cow position: chr5:25001016-25000871 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 17

Conread position: 674-814
Cow position: chr5:4088442-4088585 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 692-815
Cow position: chr5:26069058-26068932 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.