Cow genome map

Conread name: Ss1.1-Lng1-LNG010014H12.5

Conread position: 228-604
Cow position: chr6:7180879-7180497 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 256
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 38, 46

Conread position: 264-607
Cow position: chr6:2885159-2885503 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 21, 89

Conread position: 363-608
Cow position: chr6:37477130-37477375 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 166
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 82

Conread position: 609-777
Cow position: chr6:12093143-12092977 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 59

Conread position: 609-800
Cow position: chr6:63198426-63198235 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 111, 53

Conread position: 609-805
Cow position: chr6:40314616-40314815 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 98, 89

Conread position: 609-808
Cow position: chr6:62396882-62397076 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 108, 46

Conread position: 609-815
Cow position: chr6:11353449-11353665 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 609-815
Cow position: chr6:37115851-37116062 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 609-815
Cow position: chr6:37642113-37642323 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 23, 167

Conread position: 609-815
Cow position: chr6:42564657-42564867 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 71, 0

Conread position: 609-816
Cow position: chr6:2885937-2886135 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 39

Conread position: 609-816
Cow position: chr6:6476741-6476530 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 59, 132

Conread position: 609-816
Cow position: chr6:7179957-7179765 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 114, 31

Conread position: 609-816
Cow position: chr6:10054328-10054537 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 164
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 108, 0

Conread position: 609-816
Cow position: chr6:13317770-13317561 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 64, 42

Conread position: 609-816
Cow position: chr6:16672100-16672310 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 108, 0

Conread position: 609-816
Cow position: chr6:34203228-34203430 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 40, 110

Conread position: 609-816
Cow position: chr6:41552742-41552947 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 108, 45

Conread position: 609-816
Cow position: chr6:42723209-42723002 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 62, 35

Conread position: 609-816
Cow position: chr6:59741335-59741125 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 54

Conread position: 610-791
Cow position: chr6:64714830-64715015 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 610-805
Cow position: chr6:3278236-3278037 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 61, 0

Conread position: 610-805
Cow position: chr6:55544612-55544413 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr6:8201447-8201654 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr6:8761586-8761378 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr6:21686610-21686810 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 134, 45

Conread position: 610-814
Cow position: chr6:21971388-21971596 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr6:27468973-27469174 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 141, 41

Conread position: 610-814
Cow position: chr6:29311210-29311413 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 112, 30

Conread position: 610-814
Cow position: chr6:30275468-30275256 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 610-814
Cow position: chr6:34893295-34893087 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr6:35877002-35876796 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 109, 56

Conread position: 610-814
Cow position: chr6:36525757-36525965 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 61, 0

Conread position: 610-814
Cow position: chr6:40554869-40554670 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 112, 32

Conread position: 610-814
Cow position: chr6:47043717-47043509 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 610-815
Cow position: chr6:20496418-20496623 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 110, 45

Conread position: 610-815
Cow position: chr6:33388551-33388757 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 32, 53

Conread position: 610-816
Cow position: chr6:38231989-38232199 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 20, 192

Conread position: 610-816
Cow position: chr6:52804130-52804332 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 88

Conread position: 611-806
Cow position: chr6:43617432-43617631 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 611-814
Cow position: chr6:331750-331546 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 62, 0

Conread position: 611-814
Cow position: chr6:26671145-26670941 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 60, 40

Conread position: 611-814
Cow position: chr6:44150842-44150634 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 611-814
Cow position: chr6:68026498-68026704 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 59, 51

Conread position: 611-816
Cow position: chr6:65900194-65899994 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 45

Conread position: 613-774
Cow position: chr6:40274976-40275141 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 613-806
Cow position: chr6:13943632-13943825 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 58, 37

Conread position: 613-806
Cow position: chr6:39907867-39908064 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 613-809
Cow position: chr6:44028768-44028964 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 107, 45

Conread position: 613-814
Cow position: chr6:10640848-10641047 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 140, 48

Conread position: 613-814
Cow position: chr6:13978240-13978442 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 58, 163

Conread position: 613-814
Cow position: chr6:27169294-27169499 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 58, 159

Conread position: 613-816
Cow position: chr6:28491796-28491589 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 613-816
Cow position: chr6:59919561-59919354 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 616-815
Cow position: chr6:39161928-39162122 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 104, 47

Conread position: 618-805
Cow position: chr6:6566335-6566526 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 618-815
Cow position: chr6:1384121-1383924 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 43, 33

Conread position: 619-810
Cow position: chr6:65007567-65007752 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 96, 39

Conread position: 619-814
Cow position: chr6:701677-701877 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 52, 0

Conread position: 619-814
Cow position: chr6:15280819-15280620 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 619-816
Cow position: chr6:10558922-10558737 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 105, 41

Conread position: 619-816
Cow position: chr6:19453652-19453847 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 100, 44

Conread position: 619-816
Cow position: chr6:49520667-49520475 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 99, 25

Conread position: 621-815
Cow position: chr6:62488454-62488256 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 93, 38

Conread position: 622-806
Cow position: chr6:13103785-13103972 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 77

Conread position: 622-806
Cow position: chr6:57870277-57870089 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 156

Conread position: 622-809
Cow position: chr6:28063068-28063254 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 95, 43

Conread position: 622-814
Cow position: chr6:1405510-1405316 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 47, 168

Conread position: 622-814
Cow position: chr6:2374433-2374626 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 67

Conread position: 622-814
Cow position: chr6:2554434-2554630 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 622-814
Cow position: chr6:7141745-7141549 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 622-814
Cow position: chr6:17598550-17598357 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 49, 29

Conread position: 622-814
Cow position: chr6:34127078-34127271 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 49, 66

Conread position: 622-814
Cow position: chr6:42927113-42927306 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 41

Conread position: 622-814
Cow position: chr6:45671991-45672187 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 622-814
Cow position: chr6:58409183-58408990 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 49, 66

Conread position: 622-814
Cow position: chr6:65822400-65822204 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 623-815
Cow position: chr6:15476014-15476206 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 30

Conread position: 623-816
Cow position: chr6:68362588-68362395 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 54, 37

Conread position: 624-814
Cow position: chr6:50497730-50497536 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 627-815
Cow position: chr6:42359950-42359756 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 628-814
Cow position: chr6:65841327-65841517 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 628-816
Cow position: chr6:1100853-1100662 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 33, 155

Conread position: 632-813
Cow position: chr6:3889743-3889558 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 644-816
Cow position: chr6:13276551-13276727 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 0

Conread position: 644-816
Cow position: chr6:33459612-33459789 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 648-814
Cow position: chr6:28474461-28474624 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 72, 57

Conread position: 649-815
Cow position: chr6:35420826-35420661 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 137
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 24, 39

Conread position: 651-790
Cow position: chr6:16051642-16051785 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 654-806
Cow position: chr6:48368152-48368306 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 684-816
Cow position: chr6:8019869-8020001 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 63, 96

Show alignments to all cow chromosomes.