Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 427-609 |
| Cow position: | chr8:42466643-42466824 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 154, 45 |
| Conread position: | 594-816 |
| Cow position: | chr8:36292148-36292370 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 609-780 |
| Cow position: | chr8:9264287-9264119 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 109, 49 |
| Conread position: | 609-789 |
| Cow position: | chr8:45317132-45316953 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 609-814 |
| Cow position: | chr8:12716349-12716547 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 110, 49 |
| Conread position: | 609-815 |
| Cow position: | chr8:11055866-11056074 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 59, 93 |
| Conread position: | 609-815 |
| Cow position: | chr8:13735644-13735848 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 110, 57 |
| Conread position: | 609-815 |
| Cow position: | chr8:46222334-46222126 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 103 |
| Conread position: | 609-816 |
| Cow position: | chr8:27983807-27983594 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 609-816 |
| Cow position: | chr8:45189084-45189297 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 609-816 |
| Cow position: | chr8:45448443-45448650 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 609-816 |
| Cow position: | chr8:47670448-47670657 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 609-816 |
| Cow position: | chr8:47885017-47885235 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 610-777 |
| Cow position: | chr8:60060196-60060366 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 610-802 |
| Cow position: | chr8:29440835-29440640 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 158 |
| Conread position: | 610-805 |
| Cow position: | chr8:8229792-8229591 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 610-806 |
| Cow position: | chr8:19050479-19050675 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 610-806 |
| Cow position: | chr8:25407440-25407640 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 610-806 |
| Cow position: | chr8:50289159-50288959 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr8:3784702-3784909 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 610-814 |
| Cow position: | chr8:4686387-4686592 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 90 |
| Conread position: | 610-814 |
| Cow position: | chr8:8910219-8910419 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 610-814 |
| Cow position: | chr8:11801227-11801435 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 610-814 |
| Cow position: | chr8:19328947-19329155 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr8:25522390-25522598 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr8:33588370-33588578 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr8:39196224-39196016 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr8:44244583-44244375 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr8:45795752-45795544 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr8:47662334-47662127 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 610-814 |
| Cow position: | chr8:49214421-49214626 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 610-814 |
| Cow position: | chr8:50993780-50993987 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 110, 178 |
| Conread position: | 610-815 |
| Cow position: | chr8:23766395-23766198 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 63, 147 |
| Conread position: | 610-815 |
| Cow position: | chr8:46945132-46944929 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 48 |
| Conread position: | 610-816 |
| Cow position: | chr8:44077025-44076820 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 610-816 |
| Cow position: | chr8:46091866-46091660 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 611-806 |
| Cow position: | chr8:47069814-47069615 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 611-814 |
| Cow position: | chr8:3857021-3856815 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 611-816 |
| Cow position: | chr8:45161366-45161165 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 106, 58 |
| Conread position: | 611-816 |
| Cow position: | chr8:53427321-53427529 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 612-814 |
| Cow position: | chr8:5016176-5016380 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 172 |
| Conread position: | 612-814 |
| Cow position: | chr8:42483921-42484128 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 613-765 |
| Cow position: | chr8:11970565-11970415 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 613-774 |
| Cow position: | chr8:37931291-37931454 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 613-798 |
| Cow position: | chr8:26006772-26006585 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 169 |
| Conread position: | 613-806 |
| Cow position: | chr8:32632028-32631834 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 613-806 |
| Cow position: | chr8:36636547-36636350 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-806 |
| Cow position: | chr8:36637662-36637465 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 613-815 |
| Cow position: | chr8:27578402-27578607 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 177 |
| Conread position: | 613-816 |
| Cow position: | chr8:47074264-47074471 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 619-777 |
| Cow position: | chr8:12544009-12543851 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 619-816 |
| Cow position: | chr8:32930511-32930712 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 50, 137 |
| Conread position: | 619-816 |
| Cow position: | chr8:61035364-61035164 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 620-814 |
| Cow position: | chr8:22572293-22572095 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 622-788 |
| Cow position: | chr8:32439438-32439270 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-802 |
| Cow position: | chr8:12505001-12505185 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr8:8518576-8518389 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr8:10748384-10748568 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 98, 43 |
| Conread position: | 622-809 |
| Cow position: | chr8:44693299-44693491 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 622-814 |
| Cow position: | chr8:8656212-8656016 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr8:9275026-9275219 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 98, 36 |
| Conread position: | 622-816 |
| Cow position: | chr8:8316629-8316435 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 622-816 |
| Cow position: | chr8:9540486-9540291 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 622-816 |
| Cow position: | chr8:30490733-30490535 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 624-814 |
| Cow position: | chr8:9735254-9735446 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 626-816 |
| Cow position: | chr8:51668245-51668060 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 630-815 |
| Cow position: | chr8:9135878-9135690 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 630-815 |
| Cow position: | chr8:24876691-24876505 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 630-816 |
| Cow position: | chr8:44036764-44036576 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 632-774 |
| Cow position: | chr8:23216763-23216900 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 636-812 |
| Cow position: | chr8:61100518-61100335 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 644-815 |
| Cow position: | chr8:13808628-13808802 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 651-815 |
| Cow position: | chr8:11775496-11775656 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 654-814 |
| Cow position: | chr8:8533781-8533618 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 672-814 |
| Cow position: | chr8:8557093-8556948 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 672-814 |
| Cow position: | chr8:29581996-29582141 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 672-816 |
| Cow position: | chr8:45693571-45693425 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 676-816 |
| Cow position: | chr8:42161662-42161519 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 677-815 |
| Cow position: | chr8:61067180-61067039 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 681-816 |
| Cow position: | chr8:42759027-42759165 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.