Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010014H12.5 |
| Conread position: | 124-609 |
| Cow position: | chr9:6112320-6111849 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 225-601 |
| Cow position: | chr9:28001884-28002254 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 323-609 |
| Cow position: | chr9:4983588-4983866 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 251, 59 |
| Conread position: | 598-795 |
| Cow position: | chr9:26712685-26712488 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 605-816 |
| Cow position: | chr9:37129895-37129684 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 114, 44 |
| Conread position: | 609-777 |
| Cow position: | chr9:34107075-34106905 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 609-806 |
| Cow position: | chr9:3155675-3155876 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 609-807 |
| Cow position: | chr9:28626387-28626196 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 609-814 |
| Cow position: | chr9:2500652-2500443 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 609-814 |
| Cow position: | chr9:3938148-3937942 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 126 |
| Conread position: | 609-815 |
| Cow position: | chr9:4984417-4984621 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 609-815 |
| Cow position: | chr9:12845895-12845683 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 111, 54 |
| Conread position: | 609-815 |
| Cow position: | chr9:52570310-52570512 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 609-815 |
| Cow position: | chr9:64118472-64118680 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 609-816 |
| Cow position: | chr9:792867-792660 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 609-816 |
| Cow position: | chr9:6757216-6757426 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 105, 148 |
| Conread position: | 609-816 |
| Cow position: | chr9:8969280-8969072 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 609-816 |
| Cow position: | chr9:15072159-15072370 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 610-731 |
| Cow position: | chr9:18510080-18509957 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 610-753 |
| Cow position: | chr9:5003657-5003801 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 610-777 |
| Cow position: | chr9:417887-417716 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 610-789 |
| Cow position: | chr9:3567209-3567026 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 610-806 |
| Cow position: | chr9:16175412-16175611 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 610-806 |
| Cow position: | chr9:27034352-27034550 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 109, 99 |
| Conread position: | 610-806 |
| Cow position: | chr9:29629103-29628903 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-806 |
| Cow position: | chr9:59455955-59455756 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 189 |
| Conread position: | 610-814 |
| Cow position: | chr9:7002198-7002404 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 610-814 |
| Cow position: | chr9:9012753-9012956 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 610-814 |
| Cow position: | chr9:9055422-9055214 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 9, 13 |
| Conread position: | 610-814 |
| Cow position: | chr9:31807184-31807385 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 610-814 |
| Cow position: | chr9:32968386-32968593 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 610-814 |
| Cow position: | chr9:37163164-37162956 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr9:37971563-37971355 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 610-814 |
| Cow position: | chr9:42309327-42309534 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 610-814 |
| Cow position: | chr9:42568517-42568723 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 610-814 |
| Cow position: | chr9:47001850-47002054 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 134, 71 |
| Conread position: | 610-814 |
| Cow position: | chr9:59174513-59174305 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 610-814 |
| Cow position: | chr9:59483025-59482821 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 138, 45 |
| Conread position: | 610-814 |
| Cow position: | chr9:59535743-59535949 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 610-815 |
| Cow position: | chr9:1996276-1996061 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 204 |
| Conread position: | 610-816 |
| Cow position: | chr9:60278378-60278168 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 611-806 |
| Cow position: | chr9:27933739-27933938 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 611-814 |
| Cow position: | chr9:34242953-34242746 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 611-816 |
| Cow position: | chr9:13219966-13220178 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 612-813 |
| Cow position: | chr9:2052096-2052300 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 101 |
| Conread position: | 613-806 |
| Cow position: | chr9:45873001-45873192 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 613-814 |
| Cow position: | chr9:781155-780954 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 613-816 |
| Cow position: | chr9:829911-829706 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 50 |
| Conread position: | 613-816 |
| Cow position: | chr9:831785-831580 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 50 |
| Conread position: | 613-816 |
| Cow position: | chr9:2185610-2185815 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 613-816 |
| Cow position: | chr9:20310084-20309878 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 619-781 |
| Cow position: | chr9:18836436-18836597 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 619-806 |
| Cow position: | chr9:30672023-30672212 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 619-816 |
| Cow position: | chr9:54360260-54360455 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 621-816 |
| Cow position: | chr9:39992572-39992774 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 622-770 |
| Cow position: | chr9:10321478-10321630 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 622-806 |
| Cow position: | chr9:1294163-1293972 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 622-806 |
| Cow position: | chr9:17064742-17064554 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr9:25483529-25483717 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr9:31194511-31194323 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-806 |
| Cow position: | chr9:46626143-46625955 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 622-813 |
| Cow position: | chr9:163834-163640 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr9:1076543-1076347 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr9:28677630-28677827 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr9:29028573-29028377 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-814 |
| Cow position: | chr9:36724157-36724354 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 622-815 |
| Cow position: | chr9:48377741-48377547 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 92, 141 |
| Conread position: | 622-816 |
| Cow position: | chr9:222890-222695 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 633-816 |
| Cow position: | chr9:6111307-6111122 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 644-816 |
| Cow position: | chr9:10315045-10315222 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 672-806 |
| Cow position: | chr9:37064089-37063951 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 672-814 |
| Cow position: | chr9:30826388-30826533 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 115 |
| Conread position: | 681-816 |
| Cow position: | chr9:59425401-59425537 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 692-816 |
| Cow position: | chr9:34992110-34992235 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.