Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010019C07.5 |
| Conread position: | 3-319 |
| Cow position: | chr1:29950726-29950393 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 4-179 |
| Cow position: | chr1:93416214-93416391 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 15-323 |
| Cow position: | chr1:46834967-46835293 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 16-316 |
| Cow position: | chr1:80556454-80556143 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 165, 18 |
| Conread position: | 24-222 |
| Cow position: | chr1:3934553-3934356 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 162, 10 |
| Conread position: | 24-316 |
| Cow position: | chr1:55323922-55323610 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 24-317 |
| Cow position: | chr1:13253831-13253525 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 17 |
| Conread position: | 24-317 |
| Cow position: | chr1:27306369-27306063 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 24-317 |
| Cow position: | chr1:68607948-68607635 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 148, 27 |
| Conread position: | 24-317 |
| Cow position: | chr1:76623345-76623035 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 148, 17 |
| Conread position: | 24-317 |
| Cow position: | chr1:76753049-76752740 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 127, 17 |
| Conread position: | 24-317 |
| Cow position: | chr1:85881351-85881655 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 148, 27 |
| Conread position: | 24-318 |
| Cow position: | chr1:76545939-76545629 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 17 |
| Conread position: | 25-260 |
| Cow position: | chr1:39482606-39482347 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 25-260 |
| Cow position: | chr1:44102412-44102165 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 25-277 |
| Cow position: | chr1:29904463-29904195 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 25-316 |
| Cow position: | chr1:33387900-33388209 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 151, 32 |
| Conread position: | 25-316 |
| Cow position: | chr1:99021358-99021043 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 25-317 |
| Cow position: | chr1:19993080-19992765 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 298 |
| Conread position: | 26-316 |
| Cow position: | chr1:61738889-61738590 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 43-317 |
| Cow position: | chr1:33550540-33550835 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 129, 246 |
| Conread position: | 51-249 |
| Cow position: | chr1:37420346-37420138 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 51-316 |
| Cow position: | chr1:18014563-18014278 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 51-317 |
| Cow position: | chr1:57656184-57656463 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 230 |
| Conread position: | 52-236 |
| Cow position: | chr1:69063030-69062832 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 129, 85 |
| Conread position: | 52-316 |
| Cow position: | chr1:21356966-21356702 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 197, 117 |
| Conread position: | 52-316 |
| Cow position: | chr1:63501087-63501370 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 129, 262 |
| Conread position: | 52-317 |
| Cow position: | chr1:5501604-5501888 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 120, 18 |
| Conread position: | 52-317 |
| Cow position: | chr1:28872703-28872990 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 238 |
| Conread position: | 52-317 |
| Cow position: | chr1:62806175-62805893 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 233 |
| Conread position: | 52-317 |
| Cow position: | chr1:72187245-72186960 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 120, 237 |
| Conread position: | 52-318 |
| Cow position: | chr1:30058179-30058456 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 100, 61 |
| Conread position: | 54-317 |
| Cow position: | chr1:3386378-3386094 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 57-316 |
| Cow position: | chr1:32361462-32361206 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 189, 86 |
| Conread position: | 57-316 |
| Cow position: | chr1:73009451-73009712 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 59-185 |
| Cow position: | chr1:69536536-69536662 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-317 |
| Cow position: | chr1:82919016-82918749 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 110, 247 |
| Conread position: | 59-317 |
| Cow position: | chr1:87244432-87244706 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 59-317 |
| Cow position: | chr1:101149476-101149747 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 224 |
| Conread position: | 60-317 |
| Cow position: | chr1:38414446-38414715 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 74-317 |
| Cow position: | chr1:88635026-88635284 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 576-686 |
| Cow position: | chr1:63501361-63501474 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 576-699 |
| Cow position: | chr1:32342172-32342046 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 576-705 |
| Cow position: | chr1:39482078-39481946 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 576-754 |
| Cow position: | chr1:44101842-44101653 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 86 |
| Conread position: | 576-757 |
| Cow position: | chr1:80556152-80555974 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 118 |
| Conread position: | 576-757 |
| Cow position: | chr1:82355631-82355818 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 26, 159 |
Show alignments to all cow chromosomes.