Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010019C07.5 |
| Conread position: | 23-315 |
| Cow position: | chr3:49140930-49140620 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 158, 10 |
| Conread position: | 23-317 |
| Cow position: | chr3:47082172-47081866 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 257 |
| Conread position: | 24-317 |
| Cow position: | chr3:75041666-75041375 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 169, 17 |
| Conread position: | 25-316 |
| Cow position: | chr3:18729670-18729341 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 25-316 |
| Cow position: | chr3:40104427-40104129 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 25-317 |
| Cow position: | chr3:17936591-17936273 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 33, 309 |
| Conread position: | 25-317 |
| Cow position: | chr3:60387848-60388172 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 200 |
| Conread position: | 27-316 |
| Cow position: | chr3:32618428-32618127 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 113, 44 |
| Conread position: | 43-284 |
| Cow position: | chr3:19943576-19943810 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 153, 15 |
| Conread position: | 51-317 |
| Cow position: | chr3:64017860-64017572 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 239 |
| Conread position: | 52-185 |
| Cow position: | chr3:39326196-39326328 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 52-317 |
| Cow position: | chr3:594097-594370 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 52 |
| Conread position: | 52-317 |
| Cow position: | chr3:38865913-38866193 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 129, 102 |
| Conread position: | 52-317 |
| Cow position: | chr3:69932902-69933189 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 238 |
| Conread position: | 52-317 |
| Cow position: | chr3:72629577-72629860 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 120, 19 |
| Conread position: | 59-317 |
| Cow position: | chr3:31354741-31354465 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 60-317 |
| Cow position: | chr3:3805891-3806147 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 133, 32 |
| Conread position: | 62-316 |
| Cow position: | chr3:63005627-63005358 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 166 |
| Conread position: | 65-317 |
| Cow position: | chr3:19757442-19757168 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 107, 225 |
| Conread position: | 74-317 |
| Cow position: | chr3:2653648-2653899 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 90-316 |
| Cow position: | chr3:3932308-3932542 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 575-699 |
| Cow position: | chr3:17936284-17936157 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 575-705 |
| Cow position: | chr3:64821417-64821550 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 576-682 |
| Cow position: | chr3:17775880-17775988 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 576-757 |
| Cow position: | chr3:18729350-18729165 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 77 |
| Conread position: | 576-828 |
| Cow position: | chr3:3932533-3932777 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 129, 80 |
| Conread position: | 579-790 |
| Cow position: | chr3:42445285-42445076 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 585-690 |
| Cow position: | chr3:52184442-52184334 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.