Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010019C07.5 |
| Conread position: | 1-317 |
| Cow position: | chr6:701447-701789 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 24-317 |
| Cow position: | chr6:5951715-5951404 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 128, 17 |
| Conread position: | 25-316 |
| Cow position: | chr6:39161728-39162031 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 255 |
| Conread position: | 25-317 |
| Cow position: | chr6:6619884-6619589 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 26-316 |
| Cow position: | chr6:35433060-35433375 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 60, 44 |
| Conread position: | 26-317 |
| Cow position: | chr6:15141655-15141343 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 38-316 |
| Cow position: | chr6:63198602-63198312 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 143, 11 |
| Conread position: | 39-316 |
| Cow position: | chr6:6476915-6476622 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 11 |
| Conread position: | 52-315 |
| Cow position: | chr6:8201278-8201563 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 120, 238 |
| Conread position: | 52-316 |
| Cow position: | chr6:3488846-3488569 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 120, 224 |
| Conread position: | 52-317 |
| Cow position: | chr6:1823700-1823417 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 52-317 |
| Cow position: | chr6:20561563-20561277 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 120, 237 |
| Conread position: | 52-317 |
| Cow position: | chr6:28274534-28274816 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 194 |
| Conread position: | 52-317 |
| Cow position: | chr6:39437189-39437473 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 54-316 |
| Cow position: | chr6:6542295-6542567 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 127, 185 |
| Conread position: | 54-316 |
| Cow position: | chr6:34024396-34024662 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 54-316 |
| Cow position: | chr6:59478667-59478385 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 111, 82 |
| Conread position: | 58-318 |
| Cow position: | chr6:11278141-11277867 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 55 |
| Conread position: | 78-316 |
| Cow position: | chr6:28474281-28474538 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 238 |
| Conread position: | 117-316 |
| Cow position: | chr6:31569316-31569103 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 576-679 |
| Cow position: | chr6:42564766-42564872 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 576-757 |
| Cow position: | chr6:35433366-35433551 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 578-695 |
| Cow position: | chr6:11353566-11353685 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 113 |
Show alignments to all cow chromosomes.