Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010019C07.5 |
| Conread position: | 7-317 |
| Cow position: | chrX:21222260-21222595 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 15-316 |
| Cow position: | chrX:2380126-2380449 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 104 |
| Conread position: | 24-317 |
| Cow position: | chrX:29854209-29853896 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 148, 27 |
| Conread position: | 25-316 |
| Cow position: | chrX:19927662-19927983 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 25-316 |
| Cow position: | chrX:26428668-26428365 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 155, 32 |
| Conread position: | 26-284 |
| Cow position: | chrX:29794747-29794492 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 167, 25 |
| Conread position: | 27-260 |
| Cow position: | chrX:27409254-27409495 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 107 |
| Conread position: | 28-316 |
| Cow position: | chrX:24114808-24114498 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 29-317 |
| Cow position: | chrX:4795280-4795585 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 33-316 |
| Cow position: | chrX:20795969-20796272 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 42-316 |
| Cow position: | chrX:19185571-19185288 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 129, 9 |
| Conread position: | 52-260 |
| Cow position: | chrX:16017744-16017521 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 52-293 |
| Cow position: | chrX:31192379-31192129 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 166, 184 |
| Conread position: | 52-309 |
| Cow position: | chrX:6886973-6886707 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 191, 123 |
| Conread position: | 52-316 |
| Cow position: | chrX:21270785-21270518 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 104 |
| Conread position: | 52-317 |
| Cow position: | chrX:970155-970433 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 52-317 |
| Cow position: | chrX:15598310-15598597 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 52-317 |
| Cow position: | chrX:18955134-18954847 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 120, 238 |
| Conread position: | 52-317 |
| Cow position: | chrX:32095574-32095295 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 52-317 |
| Cow position: | chrX:41151608-41151894 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 52-318 |
| Cow position: | chrX:2142695-2142962 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 100, 30 |
| Conread position: | 52-318 |
| Cow position: | chrX:23392221-23391933 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 120, 238 |
| Conread position: | 54-316 |
| Cow position: | chrX:29813097-29813376 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 55-302 |
| Cow position: | chrX:28876007-28875752 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 131, 60 |
| Conread position: | 59-317 |
| Cow position: | chrX:24137007-24136727 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 74-317 |
| Cow position: | chrX:5834758-5834502 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 91-317 |
| Cow position: | chrX:35017247-35017481 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 100, 209 |
| Conread position: | 576-755 |
| Cow position: | chrX:2380440-2380622 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 82, 124 |
| Conread position: | 576-756 |
| Cow position: | chrX:28875753-28875572 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 110, 78 |
| Conread position: | 576-757 |
| Cow position: | chrX:17632166-17631972 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 82, 161 |
| Conread position: | 578-710 |
| Cow position: | chrX:6015799-6015662 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 578-752 |
| Cow position: | chrX:19185295-19185119 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 580-761 |
| Cow position: | chrX:10418509-10418321 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 32 |
Show alignments to all cow chromosomes.