Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010024G10.5 |
| Conread position: | 797-1123 |
| Cow position: | chr19:14960411-14960082 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 258 |
| Conread position: | 800-1116 |
| Cow position: | chr19:14960240-14959921 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 293 |
| Conread position: | 800-1128 |
| Cow position: | chr19:14960324-14959993 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 19, 171 |
| Conread position: | 813-1123 |
| Cow position: | chr19:23613431-23613743 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 83, 279 |
| Conread position: | 816-1108 |
| Cow position: | chr19:43570463-43570180 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 817-1122 |
| Cow position: | chr19:14948463-14948157 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 817-1125 |
| Cow position: | chr19:14939992-14940301 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 818-1104 |
| Cow position: | chr19:23614108-23614396 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 818-1107 |
| Cow position: | chr19:23614024-23614315 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 818-1107 |
| Cow position: | chr19:23614528-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 818-1108 |
| Cow position: | chr19:23597369-23597662 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 274 |
| Conread position: | 818-1111 |
| Cow position: | chr19:20678039-20678333 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 270 |
| Conread position: | 818-1116 |
| Cow position: | chr19:14960471-14960171 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 78, 274 |
| Conread position: | 818-1124 |
| Cow position: | chr19:23613520-23613828 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 818-1124 |
| Cow position: | chr19:43570378-43570080 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 820-1060 |
| Cow position: | chr19:23597453-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 211 |
| Conread position: | 820-1107 |
| Cow position: | chr19:20635461-20635170 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 820-1119 |
| Cow position: | chr19:14940328-14940631 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 274 |
| Conread position: | 820-1123 |
| Cow position: | chr19:23597119-23597424 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 68, 267 |
| Conread position: | 820-1125 |
| Cow position: | chr19:14940246-14940553 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 71, 272 |
| Conread position: | 822-1100 |
| Cow position: | chr19:23614616-23614896 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 822-1109 |
| Cow position: | chr19:23613776-23614065 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 270 |
| Conread position: | 822-1116 |
| Cow position: | chr19:23614784-23615080 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 822-1128 |
| Cow position: | chr19:20635373-20635065 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 826-1124 |
| Cow position: | chr19:14940840-14941145 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 827-1104 |
| Cow position: | chr19:20678216-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 71, 115 |
| Conread position: | 827-1104 |
| Cow position: | chr19:20678384-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 261 |
| Conread position: | 827-1106 |
| Cow position: | chr19:23649987-23650268 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 69, 265 |
| Conread position: | 827-1108 |
| Cow position: | chr19:20678300-20678583 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 827-1122 |
| Cow position: | chr19:14940589-14940886 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 265 |
| Conread position: | 828-1113 |
| Cow position: | chr19:23650156-23650443 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 828-1126 |
| Cow position: | chr19:23614706-23615006 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 829-1124 |
| Cow position: | chr19:23649905-23650202 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 258 |
| Conread position: | 829-1126 |
| Cow position: | chr19:23649569-23649868 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 159 |
| Conread position: | 831-1124 |
| Cow position: | chr19:23614289-23614584 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 831-1127 |
| Cow position: | chr19:14940173-14940471 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 832-1106 |
| Cow position: | chr19:14959635-14959359 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 832-1106 |
| Cow position: | chr19:23613954-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 832-1108 |
| Cow position: | chr19:43570206-43569928 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 260 |
| Conread position: | 832-1126 |
| Cow position: | chr19:14940510-14940806 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 66, 260 |
| Conread position: | 832-1128 |
| Cow position: | chr19:14940678-14940976 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 64, 260 |
| Conread position: | 836-1064 |
| Cow position: | chr19:14959058-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 836-1108 |
| Cow position: | chr19:14960035-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 217 |
| Conread position: | 839-1113 |
| Cow position: | chr19:23649747-23650023 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 839-1116 |
| Cow position: | chr19:20677640-20677919 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 108 |
| Conread position: | 839-1126 |
| Cow position: | chr19:14940097-14940386 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 57, 253 |
| Conread position: | 841-1125 |
| Cow position: | chr19:14948356-14948070 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 56, 251 |
| Conread position: | 861-1107 |
| Cow position: | chr19:14959117-14958869 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 227 |
| Conread position: | 861-1116 |
| Cow position: | chr19:23597076-23597333 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 34, 229 |
| Conread position: | 870-1112 |
| Cow position: | chr19:23614496-23614740 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 222 |
| Conread position: | 870-1127 |
| Cow position: | chr19:23649442-23649701 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 21, 217 |
| Conread position: | 871-1126 |
| Cow position: | chr19:23649695-23649952 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 142 |
| Conread position: | 892-1106 |
| Cow position: | chr19:23614436-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 892-1126 |
| Cow position: | chr19:23597361-23597595 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 198 |
| Conread position: | 898-1106 |
| Cow position: | chr19:23613351-23613558 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 898-1114 |
| Cow position: | chr19:23649557-23649772 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 109, 96 |
| Conread position: | 898-1127 |
| Cow position: | chr19:14959239-14959017 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 900-1116 |
| Cow position: | chr19:43570051-43569836 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 39, 44 |
Show alignments to all cow chromosomes.