Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010024G10.5 |
| Conread position: | 628-1126 |
| Cow position: | chr23:24561078-24560578 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 87, 92 |
| Conread position: | 628-1127 |
| Cow position: | chr23:24653854-24654346 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 725-1126 |
| Cow position: | chr23:25660061-25660463 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 803-1126 |
| Cow position: | chr23:24639202-24639528 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 18, 290 |
| Conread position: | 813-1110 |
| Cow position: | chr23:24522487-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 82, 249 |
| Conread position: | 814-1105 |
| Cow position: | chr23:25626532-25626822 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 77, 34 |
| Conread position: | 814-1126 |
| Cow position: | chr23:24560724-24560410 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 815-1125 |
| Cow position: | chr23:24547331-24547019 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 277 |
| Conread position: | 816-1115 |
| Cow position: | chr23:25724127-25723826 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 276 |
| Conread position: | 817-1090 |
| Cow position: | chr23:24654119-24654394 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 817-1126 |
| Cow position: | chr23:24639551-24639864 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 818-1126 |
| Cow position: | chr23:24535793-24535481 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 28, 274 |
| Conread position: | 818-1127 |
| Cow position: | chr23:25660405-25660716 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 819-1126 |
| Cow position: | chr23:24626312-24626620 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 44, 6 |
| Conread position: | 820-1074 |
| Cow position: | chr23:25626787-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 820-1083 |
| Cow position: | chr23:24639806-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 820-1089 |
| Cow position: | chr23:24626480-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 820-1122 |
| Cow position: | chr23:25698486-25698180 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 129 |
| Conread position: | 820-1123 |
| Cow position: | chr23:24639638-24639945 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 820-1124 |
| Cow position: | chr23:24626396-24626702 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 272 |
| Conread position: | 820-1124 |
| Cow position: | chr23:25626118-25626424 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 820-1126 |
| Cow position: | chr23:24560550-24560242 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 820-1126 |
| Cow position: | chr23:24560636-24560326 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 820-1126 |
| Cow position: | chr23:24639722-24640032 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 17, 274 |
| Conread position: | 820-1126 |
| Cow position: | chr23:25626703-25627011 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 820-1126 |
| Cow position: | chr23:25698570-25698260 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 26, 261 |
| Conread position: | 822-1104 |
| Cow position: | chr23:25626204-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 822-1108 |
| Cow position: | chr23:25660325-25660613 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 822-1113 |
| Cow position: | chr23:24560380-24560088 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 822-1123 |
| Cow position: | chr23:25724037-25723734 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 822-1125 |
| Cow position: | chr23:24547240-24546935 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 822-1126 |
| Cow position: | chr23:24547072-24546766 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 822-1127 |
| Cow position: | chr23:25626621-25626928 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 270 |
| Conread position: | 827-1072 |
| Cow position: | chr23:25660498-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 827-1075 |
| Cow position: | chr23:25723948-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 827-1112 |
| Cow position: | chr23:25660246-25660533 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 140 |
| Conread position: | 827-1116 |
| Cow position: | chr23:24522557-24522266 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 72, 265 |
| Conread position: | 827-1125 |
| Cow position: | chr23:24535950-24535650 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 69, 265 |
| Conread position: | 827-1126 |
| Cow position: | chr23:24560459-24560158 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 64, 265 |
| Conread position: | 832-1127 |
| Cow position: | chr23:24547146-24546849 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 866-1046 |
| Cow position: | chr23:24522350-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 870-1125 |
| Cow position: | chr23:24626278-24626535 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 14, 222 |
| Conread position: | 913-1126 |
| Cow position: | chr23:25698304-25698092 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 178, 0 |
Show alignments to all cow chromosomes.