Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010024G10.5 |
| Conread position: | 810-1112 |
| Cow position: | chr25:33298556-33298860 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 817-1113 |
| Cow position: | chr25:34433525-34433819 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 285, 8 |
| Conread position: | 817-1116 |
| Cow position: | chr25:34446936-34447239 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 277 |
| Conread position: | 817-1123 |
| Cow position: | chr25:33145096-33145406 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 150 |
| Conread position: | 817-1127 |
| Cow position: | chr25:346530-346844 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 818-1116 |
| Cow position: | chr25:34769703-34769403 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 79, 274 |
| Conread position: | 820-1104 |
| Cow position: | chr25:34732605-34732319 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 71, 272 |
| Conread position: | 820-1116 |
| Cow position: | chr25:33157470-33157172 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 71, 272 |
| Conread position: | 820-1116 |
| Cow position: | chr25:34447191-34447491 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 274 |
| Conread position: | 820-1122 |
| Cow position: | chr25:33157136-33156830 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 12, 213 |
| Conread position: | 820-1124 |
| Cow position: | chr25:33298648-33298956 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 820-1124 |
| Cow position: | chr25:34769955-34769647 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 822-1061 |
| Cow position: | chr25:33127975-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 822-1116 |
| Cow position: | chr25:33157384-33157088 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 69, 270 |
| Conread position: | 822-1124 |
| Cow position: | chr25:23420388-23420692 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 266 |
| Conread position: | 822-1126 |
| Cow position: | chr25:34447111-34447417 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 825-1127 |
| Cow position: | chr25:33127726-33128030 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 267 |
| Conread position: | 826-1116 |
| Cow position: | chr25:33127895-33128187 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 827-1063 |
| Cow position: | chr25:33145192-33145431 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 827-1087 |
| Cow position: | chr25:33157043-33156781 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 827-1105 |
| Cow position: | chr25:33298741-33299021 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 827-1112 |
| Cow position: | chr25:33299413-33299700 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 70, 265 |
| Conread position: | 827-1124 |
| Cow position: | chr25:23420561-23420860 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 264 |
| Conread position: | 827-1125 |
| Cow position: | chr25:34769778-34769478 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 827-1126 |
| Cow position: | chr25:33127812-33128113 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 265 |
| Conread position: | 827-1126 |
| Cow position: | chr25:33157211-33156910 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 261 |
| Conread position: | 827-1126 |
| Cow position: | chr25:34769610-34769309 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 827-1128 |
| Cow position: | chr25:33305141-33304843 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 828-1106 |
| Cow position: | chr25:22235840-22236120 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 137 |
| Conread position: | 828-1127 |
| Cow position: | chr25:366736-367037 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 68, 118 |
| Conread position: | 829-1122 |
| Cow position: | chr25:34447034-34447329 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 67, 163 |
| Conread position: | 832-1108 |
| Cow position: | chr25:33144864-33145139 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 148 |
| Conread position: | 832-1127 |
| Cow position: | chr25:34770025-34769728 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 260 |
| Conread position: | 832-1128 |
| Cow position: | chr25:33299334-33299632 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 260 |
| Conread position: | 841-1104 |
| Cow position: | chr25:326947-327213 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 251 |
| Conread position: | 841-1116 |
| Cow position: | chr25:33157281-33157004 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 251 |
| Conread position: | 841-1123 |
| Cow position: | chr25:33299091-33299375 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 251 |
| Conread position: | 845-1126 |
| Cow position: | chr25:33157529-33157246 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 51, 247 |
| Conread position: | 874-1126 |
| Cow position: | chr25:34770151-34769897 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 23, 218 |
| Conread position: | 880-1112 |
| Cow position: | chr25:33299298-33299532 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 212 |
| Conread position: | 890-1112 |
| Cow position: | chr25:23420374-23420596 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 9, 199 |
| Conread position: | 898-1098 |
| Cow position: | chr25:33299067-33299266 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 898-1103 |
| Cow position: | chr25:34433020-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 898-1116 |
| Cow position: | chr25:34732608-34732391 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 898-1122 |
| Cow position: | chr25:34762829-34763052 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 898-1125 |
| Cow position: | chr25:34770040-34769814 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 928-1110 |
| Cow position: | chr25:23420329-23420510 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 161, 0 |
Show alignments to all cow chromosomes.