Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010027H09.5 |
| Conread position: | 920-1212 |
| Cow position: | chr1:78752302-78752595 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 216, 269 |
| Conread position: | 1078-1289 |
| Cow position: | chr1:74714001-74713799 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 59, 91 |
| Conread position: | 1080-1274 |
| Cow position: | chr1:40419911-40420106 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 1081-1236 |
| Cow position: | chr1:68332655-68332809 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 1081-1289 |
| Cow position: | chr1:3750436-3750236 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 1081-1289 |
| Cow position: | chr1:52207530-52207330 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 52, 5 |
| Conread position: | 1082-1235 |
| Cow position: | chr1:59911124-59910969 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 114 |
| Conread position: | 1082-1235 |
| Cow position: | chr1:80329408-80329564 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1082-1250 |
| Cow position: | chr1:11878642-11878807 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 120 |
| Conread position: | 1082-1251 |
| Cow position: | chr1:3746643-3746479 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1082-1255 |
| Cow position: | chr1:69290682-69290514 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 1082-1267 |
| Cow position: | chr1:39251531-39251337 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 1082-1268 |
| Cow position: | chr1:6865868-6866053 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 42, 111 |
| Conread position: | 1082-1271 |
| Cow position: | chr1:81370932-81371119 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 1082-1277 |
| Cow position: | chr1:85777-85583 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 1082-1280 |
| Cow position: | chr1:41092629-41092823 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 104 |
| Conread position: | 1082-1281 |
| Cow position: | chr1:28407977-28408170 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 171, 29 |
| Conread position: | 1082-1281 |
| Cow position: | chr1:64745210-64745403 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 1082-1282 |
| Cow position: | chr1:11831852-11831662 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1082-1282 |
| Cow position: | chr1:23510252-23510442 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 54, 94 |
| Conread position: | 1082-1282 |
| Cow position: | chr1:31232809-31232990 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1082-1282 |
| Cow position: | chr1:37739252-37739444 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 1082-1282 |
| Cow position: | chr1:40222275-40222459 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1082-1282 |
| Cow position: | chr1:62041917-62041728 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 1082-1289 |
| Cow position: | chr1:22072186-22071986 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 96 |
| Conread position: | 1082-1289 |
| Cow position: | chr1:39244009-39244221 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 175, 104 |
| Conread position: | 1082-1289 |
| Cow position: | chr1:49728423-49728217 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 1082-1289 |
| Cow position: | chr1:57757725-57757532 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 1082-1289 |
| Cow position: | chr1:64098738-64098945 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 1082-1289 |
| Cow position: | chr1:71555257-71555470 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 1082-1289 |
| Cow position: | chr1:81293024-81292818 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 1082-1289 |
| Cow position: | chr1:101966815-101967018 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 1082-1291 |
| Cow position: | chr1:65155233-65155441 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 112 |
| Conread position: | 1082-1294 |
| Cow position: | chr1:101884154-101883945 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 202, 50 |
| Conread position: | 1082-1295 |
| Cow position: | chr1:2599177-2599391 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 1082-1295 |
| Cow position: | chr1:8726165-8726384 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 56, 151 |
| Conread position: | 1082-1295 |
| Cow position: | chr1:25885560-25885766 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 1082-1295 |
| Cow position: | chr1:77755169-77755389 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1082-1295 |
| Cow position: | chr1:82572700-82572910 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 1082-1295 |
| Cow position: | chr1:85409324-85409535 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 1082-1296 |
| Cow position: | chr1:61242261-61242048 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 1082-1296 |
| Cow position: | chr1:64479422-64479639 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 1085-1270 |
| Cow position: | chr1:100132420-100132230 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1086-1199 |
| Cow position: | chr1:71086267-71086152 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1086-1289 |
| Cow position: | chr1:28512117-28512307 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1088-1281 |
| Cow position: | chr1:37432918-37432725 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 112, 49 |
| Conread position: | 1088-1291 |
| Cow position: | chr1:6985313-6985501 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1089-1226 |
| Cow position: | chr1:2297112-2296976 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1089-1289 |
| Cow position: | chr1:18223341-18223528 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 1090-1271 |
| Cow position: | chr1:88017297-88017479 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 1091-1226 |
| Cow position: | chr1:54365082-54365217 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 1092-1226 |
| Cow position: | chr1:22496081-22495949 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 1108-1282 |
| Cow position: | chr1:92550598-92550772 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 1112-1219 |
| Cow position: | chr1:76779925-76780034 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 1131-1296 |
| Cow position: | chr1:30518615-30518452 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 1132-1296 |
| Cow position: | chr1:40164721-40164568 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1133-1279 |
| Cow position: | chr1:87914467-87914606 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1137-1296 |
| Cow position: | chr1:56858715-56858556 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 1142-1269 |
| Cow position: | chr1:37465536-37465663 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 1142-1269 |
| Cow position: | chr1:90370466-90370594 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 1152-1292 |
| Cow position: | chr1:19439326-19439461 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.