Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010027H09.5 |
| Conread position: | 1076-1271 |
| Cow position: | chr10:31220688-31220496 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 1081-1275 |
| Cow position: | chr10:45195884-45195697 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 73 |
| Conread position: | 1082-1190 |
| Cow position: | chr10:55874260-55874153 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1082-1226 |
| Cow position: | chr10:4013805-4013663 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 1082-1226 |
| Cow position: | chr10:25536553-25536405 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1082-1242 |
| Cow position: | chr10:49279995-49280156 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 1082-1265 |
| Cow position: | chr10:60244134-60243958 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 1082-1276 |
| Cow position: | chr10:3855243-3855061 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1082-1279 |
| Cow position: | chr10:21477496-21477300 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 123 |
| Conread position: | 1082-1279 |
| Cow position: | chr10:37665068-37665263 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 55, 93 |
| Conread position: | 1082-1280 |
| Cow position: | chr10:21563519-21563310 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 84 |
| Conread position: | 1082-1280 |
| Cow position: | chr10:28565618-28565806 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 1082-1280 |
| Cow position: | chr10:35182208-35182012 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 1082-1280 |
| Cow position: | chr10:41638311-41638114 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 1082-1282 |
| Cow position: | chr10:3318399-3318202 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 163 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 1082-1282 |
| Cow position: | chr10:11276191-11275990 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 1082-1282 |
| Cow position: | chr10:16668824-16669023 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 1082-1282 |
| Cow position: | chr10:19128274-19128483 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 25, 121 |
| Conread position: | 1082-1282 |
| Cow position: | chr10:23879640-23879834 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1082-1289 |
| Cow position: | chr10:2711219-2711422 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 1082-1289 |
| Cow position: | chr10:12199537-12199326 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 1082-1292 |
| Cow position: | chr10:47584206-47584006 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 1082-1292 |
| Cow position: | chr10:63621354-63621559 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 1082-1292 |
| Cow position: | chr10:68203566-68203776 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 1082-1294 |
| Cow position: | chr10:24609305-24609089 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 1082-1295 |
| Cow position: | chr10:17745630-17745425 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 54, 104 |
| Conread position: | 1082-1296 |
| Cow position: | chr10:767273-767479 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 1083-1289 |
| Cow position: | chr10:5421860-5422066 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 106 |
| Conread position: | 1084-1293 |
| Cow position: | chr10:68980042-68979842 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 1085-1282 |
| Cow position: | chr10:22455708-22455512 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 1085-1282 |
| Cow position: | chr10:67051406-67051214 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 93 |
| Conread position: | 1085-1289 |
| Cow position: | chr10:57404160-57404356 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 1086-1289 |
| Cow position: | chr10:17415378-17415576 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1088-1276 |
| Cow position: | chr10:54342789-54342975 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 1088-1282 |
| Cow position: | chr10:15824016-15824207 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1088-1296 |
| Cow position: | chr10:18863382-18863180 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 49, 92 |
| Conread position: | 1088-1296 |
| Cow position: | chr10:52132077-52131875 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1094-1226 |
| Cow position: | chr10:29487381-29487247 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 1097-1290 |
| Cow position: | chr10:48193192-48193383 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 39, 92 |
| Conread position: | 1100-1292 |
| Cow position: | chr10:37092584-37092776 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 37, 97 |
| Conread position: | 1105-1274 |
| Cow position: | chr10:15617947-15618109 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 1107-1257 |
| Cow position: | chr10:3536182-3536323 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1152-1282 |
| Cow position: | chr10:27223219-27223093 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.