Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010027H09.5 |
| Conread position: | 1043-1272 |
| Cow position: | chr11:40574205-40574429 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 94, 139 |
| Conread position: | 1081-1281 |
| Cow position: | chr11:18452625-18452810 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1081-1282 |
| Cow position: | chr11:58793477-58793673 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 1081-1286 |
| Cow position: | chr11:39830703-39830896 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 1082-1217 |
| Cow position: | chr11:15374312-15374178 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 1082-1225 |
| Cow position: | chr11:3261236-3261102 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1082-1226 |
| Cow position: | chr11:15106273-15106418 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 1082-1251 |
| Cow position: | chr11:34265954-34265790 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 1082-1256 |
| Cow position: | chr11:81987586-81987756 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 86, 113 |
| Conread position: | 1082-1264 |
| Cow position: | chr11:64101580-64101395 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1082-1269 |
| Cow position: | chr11:54204299-54204479 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 1082-1270 |
| Cow position: | chr11:21909605-21909792 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 54, 132 |
| Conread position: | 1082-1279 |
| Cow position: | chr11:57153131-57153329 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 116 |
| Conread position: | 1082-1281 |
| Cow position: | chr11:77713132-77713324 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 1082-1282 |
| Cow position: | chr11:11109574-11109776 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 1082-1282 |
| Cow position: | chr11:25807208-25807406 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 121 |
| Conread position: | 1082-1282 |
| Cow position: | chr11:35284624-35284433 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 81 |
| Conread position: | 1082-1282 |
| Cow position: | chr11:55282990-55283198 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 53, 120 |
| Conread position: | 1082-1282 |
| Cow position: | chr11:69491942-69491749 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 55, 82 |
| Conread position: | 1082-1289 |
| Cow position: | chr11:10877780-10877577 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1082-1289 |
| Cow position: | chr11:15885826-15885623 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 112 |
| Conread position: | 1082-1289 |
| Cow position: | chr11:34303994-34303792 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 1082-1290 |
| Cow position: | chr11:34398008-34397801 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 114 |
| Conread position: | 1082-1293 |
| Cow position: | chr11:82529391-82529176 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 1082-1295 |
| Cow position: | chr11:22851570-22851358 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 1082-1296 |
| Cow position: | chr11:8087634-8087841 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 54, 82 |
| Conread position: | 1083-1282 |
| Cow position: | chr11:55119995-55119801 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 1083-1296 |
| Cow position: | chr11:25972419-25972614 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 1084-1282 |
| Cow position: | chr11:77756230-77756427 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 1086-1281 |
| Cow position: | chr11:1774361-1774557 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 1086-1291 |
| Cow position: | chr11:44064410-44064203 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 119 |
| Conread position: | 1088-1220 |
| Cow position: | chr11:16363870-16364006 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 109 |
| Conread position: | 1088-1282 |
| Cow position: | chr11:24008624-24008427 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1088-1282 |
| Cow position: | chr11:74171092-74171279 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 1088-1283 |
| Cow position: | chr11:38113919-38114120 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 1088-1295 |
| Cow position: | chr11:57752856-57753061 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 1088-1296 |
| Cow position: | chr11:18153725-18153929 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 1089-1289 |
| Cow position: | chr11:35251474-35251662 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1089-1291 |
| Cow position: | chr11:70605900-70605702 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 101 |
| Conread position: | 1090-1251 |
| Cow position: | chr11:30660812-30660648 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1092-1296 |
| Cow position: | chr11:43855711-43855915 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 1093-1289 |
| Cow position: | chr11:12065217-12065034 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 1095-1242 |
| Cow position: | chr11:27817001-27817145 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 69 |
| Conread position: | 1095-1282 |
| Cow position: | chr11:57062377-57062195 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 42, 85 |
| Conread position: | 1097-1277 |
| Cow position: | chr11:29785628-29785451 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 1097-1289 |
| Cow position: | chr11:19567552-19567364 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 1101-1263 |
| Cow position: | chr11:18090654-18090489 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1106-1281 |
| Cow position: | chr11:60511570-60511747 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 1107-1280 |
| Cow position: | chr11:43831297-43831473 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 78, 135 |
| Conread position: | 1107-1295 |
| Cow position: | chr11:84729441-84729255 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 1111-1233 |
| Cow position: | chr11:9295131-9295254 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 1133-1282 |
| Cow position: | chr11:25856665-25856523 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.