Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010027H09.5 |
| Conread position: | 1076-1274 |
| Cow position: | chr13:6921038-6921232 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 1080-1282 |
| Cow position: | chr13:26943364-26943162 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 62 |
| Conread position: | 1081-1279 |
| Cow position: | chr13:28605970-28605773 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 1081-1281 |
| Cow position: | chr13:12214033-12213830 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 55, 6 |
| Conread position: | 1081-1282 |
| Cow position: | chr13:22985011-22984807 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 5, 123 |
| Conread position: | 1081-1289 |
| Cow position: | chr13:22193960-22193760 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 1081-1289 |
| Cow position: | chr13:47325346-47325543 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 1082-1216 |
| Cow position: | chr13:20876536-20876671 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 1082-1225 |
| Cow position: | chr13:57746403-57746253 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 1082-1226 |
| Cow position: | chr13:15490075-15489931 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 114 |
| Conread position: | 1082-1252 |
| Cow position: | chr13:18839618-18839453 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1082-1259 |
| Cow position: | chr13:14708922-14708745 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 1082-1279 |
| Cow position: | chr13:17597317-17597132 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1082-1279 |
| Cow position: | chr13:51142466-51142652 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 1082-1280 |
| Cow position: | chr13:38361743-38361939 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1082-1282 |
| Cow position: | chr13:5619125-5619327 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 1082-1282 |
| Cow position: | chr13:12325639-12325451 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 1082-1282 |
| Cow position: | chr13:24403820-24404019 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 147, 104 |
| Conread position: | 1082-1282 |
| Cow position: | chr13:34264556-34264741 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 1082-1282 |
| Cow position: | chr13:44143855-44144049 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 1082-1289 |
| Cow position: | chr13:19014915-19015121 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 1082-1289 |
| Cow position: | chr13:55407217-55407014 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 112 |
| Conread position: | 1082-1291 |
| Cow position: | chr13:51241280-51241070 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 116 |
| Conread position: | 1082-1291 |
| Cow position: | chr13:59997241-59997453 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 1082-1292 |
| Cow position: | chr13:12658257-12658055 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 1082-1295 |
| Cow position: | chr13:25955069-25955284 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1082-1296 |
| Cow position: | chr13:43385345-43385137 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 1083-1271 |
| Cow position: | chr13:38534845-38535026 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 20, 101 |
| Conread position: | 1083-1282 |
| Cow position: | chr13:48580440-48580632 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 1083-1289 |
| Cow position: | chr13:34885532-34885324 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 55, 113 |
| Conread position: | 1084-1282 |
| Cow position: | chr13:14079894-14080094 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 1084-1290 |
| Cow position: | chr13:34931804-34931603 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 1085-1214 |
| Cow position: | chr13:27795947-27795821 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 1086-1289 |
| Cow position: | chr13:17169739-17169544 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 1086-1296 |
| Cow position: | chr13:57611772-57611560 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 1088-1249 |
| Cow position: | chr13:4659520-4659682 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 1088-1254 |
| Cow position: | chr13:11222879-11223046 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 1088-1282 |
| Cow position: | chr13:57246286-57246100 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 1089-1289 |
| Cow position: | chr13:46464277-46464470 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 1090-1218 |
| Cow position: | chr13:37498247-37498121 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1090-1257 |
| Cow position: | chr13:698919-698756 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 154, 90 |
| Conread position: | 1092-1296 |
| Cow position: | chr13:10854473-10854677 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 111 |
| Conread position: | 1096-1277 |
| Cow position: | chr13:4796369-4796189 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 90 |
| Conread position: | 1097-1229 |
| Cow position: | chr13:1364184-1364311 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1100-1281 |
| Cow position: | chr13:9103084-9103260 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 1100-1289 |
| Cow position: | chr13:2416582-2416395 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 1101-1282 |
| Cow position: | chr13:43803466-43803278 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1101-1292 |
| Cow position: | chr13:43928701-43928893 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 132 |
| Conread position: | 1102-1284 |
| Cow position: | chr13:11778385-11778222 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1106-1289 |
| Cow position: | chr13:18596836-18597015 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 152 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1106-1296 |
| Cow position: | chr13:19115939-19115752 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 1132-1289 |
| Cow position: | chr13:21878178-21878333 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 1152-1289 |
| Cow position: | chr13:39487812-39487672 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 1156-1295 |
| Cow position: | chr13:24676140-24676008 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1167-1281 |
| Cow position: | chr13:11442017-11441899 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1173-1279 |
| Cow position: | chr13:45497738-45497636 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.