Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010027H09.5 |
| Conread position: | 1067-1293 |
| Cow position: | chr15:40066117-40065894 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 71, 120 |
| Conread position: | 1081-1235 |
| Cow position: | chr15:23265987-23265835 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1081-1277 |
| Cow position: | chr15:49279253-49279450 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 1081-1284 |
| Cow position: | chr15:21182207-21182007 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 1081-1289 |
| Cow position: | chr15:38902260-38902453 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1081-1292 |
| Cow position: | chr15:30570353-30570139 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 1081-1296 |
| Cow position: | chr15:11997969-11997752 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 1082-1193 |
| Cow position: | chr15:36277981-36278095 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1082-1197 |
| Cow position: | chr15:41807329-41807445 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 1082-1218 |
| Cow position: | chr15:4622564-4622692 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 1082-1226 |
| Cow position: | chr15:7443715-7443863 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 49, 85 |
| Conread position: | 1082-1250 |
| Cow position: | chr15:16989704-16989542 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 1082-1256 |
| Cow position: | chr15:49272143-49271975 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 81 |
| Conread position: | 1082-1266 |
| Cow position: | chr15:28607958-28608149 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 82 |
| Conread position: | 1082-1270 |
| Cow position: | chr15:21802752-21802572 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 90 |
| Conread position: | 1082-1274 |
| Cow position: | chr15:13081533-13081335 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 1082-1277 |
| Cow position: | chr15:53335565-53335368 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 1082-1281 |
| Cow position: | chr15:25683910-25683712 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 1082-1281 |
| Cow position: | chr15:39809718-39809521 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 107 |
| Conread position: | 1082-1281 |
| Cow position: | chr15:52132052-52131856 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 114 |
| Conread position: | 1082-1282 |
| Cow position: | chr15:583056-582853 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 1082-1282 |
| Cow position: | chr15:14610033-14610240 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 1082-1282 |
| Cow position: | chr15:17642411-17642216 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 1082-1282 |
| Cow position: | chr15:37633577-37633379 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 1082-1282 |
| Cow position: | chr15:44797054-44797252 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 1082-1282 |
| Cow position: | chr15:52869030-52868836 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 53, 81 |
| Conread position: | 1082-1286 |
| Cow position: | chr15:11287173-11287378 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 1082-1288 |
| Cow position: | chr15:14810726-14810919 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1082-1289 |
| Cow position: | chr15:1888284-1888083 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 1082-1289 |
| Cow position: | chr15:31855680-31855474 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 54, 152 |
| Conread position: | 1082-1290 |
| Cow position: | chr15:12283377-12283178 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 1082-1296 |
| Cow position: | chr15:5912172-5912390 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 121 |
| Conread position: | 1082-1296 |
| Cow position: | chr15:16669211-16669425 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 72 |
| Conread position: | 1083-1282 |
| Cow position: | chr15:10581616-10581424 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 1088-1277 |
| Cow position: | chr15:31935738-31935553 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 65 |
| Conread position: | 1090-1282 |
| Cow position: | chr15:53713042-53712851 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 1090-1291 |
| Cow position: | chr15:53728073-53728270 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 1093-1222 |
| Cow position: | chr15:26594247-26594384 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1093-1282 |
| Cow position: | chr15:12048540-12048722 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 1094-1282 |
| Cow position: | chr15:9437693-9437517 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1094-1289 |
| Cow position: | chr15:1891988-1892178 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 1094-1289 |
| Cow position: | chr15:9427821-9428017 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 38, 104 |
| Conread position: | 1095-1289 |
| Cow position: | chr15:37469759-37469960 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1099-1271 |
| Cow position: | chr15:6523248-6523420 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 1106-1281 |
| Cow position: | chr15:8630525-8630355 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1115-1295 |
| Cow position: | chr15:34552110-34551932 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 1119-1289 |
| Cow position: | chr15:36864381-36864549 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 1134-1277 |
| Cow position: | chr15:39360020-39360161 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1134-1290 |
| Cow position: | chr15:36582402-36582550 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1134-1295 |
| Cow position: | chr15:35042540-35042381 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.