Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010027H09.5 |
| Conread position: | 1059-1264 |
| Cow position: | chr3:52658029-52657831 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 1081-1266 |
| Cow position: | chr3:55106902-55107083 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 1081-1282 |
| Cow position: | chr3:13527139-13526946 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 1081-1295 |
| Cow position: | chr3:23274455-23274662 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 1082-1205 |
| Cow position: | chr3:5317245-5317371 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1082-1210 |
| Cow position: | chr3:41860847-41860974 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 112 |
| Conread position: | 1082-1217 |
| Cow position: | chr3:49414235-49414366 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1082-1262 |
| Cow position: | chr3:52817518-52817339 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 95 |
| Conread position: | 1082-1263 |
| Cow position: | chr3:1339418-1339241 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 1082-1274 |
| Cow position: | chr3:27633488-27633683 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 193 |
| Conread position: | 1082-1274 |
| Cow position: | chr3:31528339-31528165 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1082-1278 |
| Cow position: | chr3:56042213-56042398 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1082-1280 |
| Cow position: | chr3:73154464-73154280 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1082-1281 |
| Cow position: | chr3:35028889-35029099 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 195 |
| Conread position: | 1082-1281 |
| Cow position: | chr3:77589900-77589713 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 1082-1282 |
| Cow position: | chr3:1549827-1549629 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 119, 38 |
| Conread position: | 1082-1282 |
| Cow position: | chr3:5084617-5084810 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 1082-1282 |
| Cow position: | chr3:15091382-15091198 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 81 |
| Conread position: | 1082-1282 |
| Cow position: | chr3:39385588-39385781 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 1082-1282 |
| Cow position: | chr3:43966899-43967094 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 50, 82 |
| Conread position: | 1082-1282 |
| Cow position: | chr3:58348990-58348794 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 101 |
| Conread position: | 1082-1286 |
| Cow position: | chr3:32773712-32773504 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 54, 106 |
| Conread position: | 1082-1289 |
| Cow position: | chr3:2285203-2285000 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 1082-1289 |
| Cow position: | chr3:17519278-17519479 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 111, 78 |
| Conread position: | 1082-1289 |
| Cow position: | chr3:23478748-23478542 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 1082-1289 |
| Cow position: | chr3:27346844-27347050 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 1082-1289 |
| Cow position: | chr3:34165133-34165339 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 1082-1289 |
| Cow position: | chr3:43004286-43004494 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 1082-1289 |
| Cow position: | chr3:78442370-78442577 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 112 |
| Conread position: | 1082-1292 |
| Cow position: | chr3:12531602-12531811 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 50, 105 |
| Conread position: | 1082-1292 |
| Cow position: | chr3:74723922-74724133 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 1082-1295 |
| Cow position: | chr3:77468476-77468260 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 153 |
| Conread position: | 1082-1296 |
| Cow position: | chr3:6798483-6798693 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 1082-1296 |
| Cow position: | chr3:45642009-45641811 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 114, 54 |
| Conread position: | 1082-1296 |
| Cow position: | chr3:68127603-68127400 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 1083-1226 |
| Cow position: | chr3:69148027-69148168 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1085-1296 |
| Cow position: | chr3:60947684-60947889 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 1085-1296 |
| Cow position: | chr3:79315696-79315484 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 1086-1289 |
| Cow position: | chr3:24532333-24532128 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 1086-1289 |
| Cow position: | chr3:36514847-36515034 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1087-1289 |
| Cow position: | chr3:54328846-54329036 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1088-1240 |
| Cow position: | chr3:5545464-5545316 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 1088-1269 |
| Cow position: | chr3:21332307-21332478 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 1088-1277 |
| Cow position: | chr3:50500076-50499898 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1088-1279 |
| Cow position: | chr3:63334204-63334387 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 1089-1267 |
| Cow position: | chr3:26581562-26581742 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 47, 133 |
| Conread position: | 1091-1289 |
| Cow position: | chr3:47498023-47497829 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 1093-1248 |
| Cow position: | chr3:27879423-27879577 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 44, 85 |
| Conread position: | 1093-1251 |
| Cow position: | chr3:31286397-31286552 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1095-1282 |
| Cow position: | chr3:12311581-12311392 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 1099-1289 |
| Cow position: | chr3:60854342-60854533 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 1100-1281 |
| Cow position: | chr3:65392566-65392380 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 137, 76 |
| Conread position: | 1101-1282 |
| Cow position: | chr3:32513620-32513794 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 76 |
| Conread position: | 1101-1289 |
| Cow position: | chr3:64081961-64081777 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 1102-1282 |
| Cow position: | chr3:56164261-56164083 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 1104-1282 |
| Cow position: | chr3:73418548-73418373 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 1109-1291 |
| Cow position: | chr3:85086336-85086166 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 32, 82 |
Show alignments to all cow chromosomes.