Cow genome map

Conread name: Ss1.1-Lng1-LNG010027H09.5

Conread position: 1081-1233
Cow position: chr5:54761596-54761446 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 5

Conread position: 1081-1279
Cow position: chr5:31551398-31551203 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 81

Conread position: 1082-1220
Cow position: chr5:31461772-31461628 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 119

Conread position: 1082-1235
Cow position: chr5:31944156-31944004 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 105

Conread position: 1082-1249
Cow position: chr5:9232706-9232869 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 32

Conread position: 1082-1251
Cow position: chr5:12602456-12602294 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 1082-1251
Cow position: chr5:37624639-37624470 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 48, 75

Conread position: 1082-1254
Cow position: chr5:67579616-67579447 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 54, 102

Conread position: 1082-1274
Cow position: chr5:27493300-27493109 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 50, 113

Conread position: 1082-1278
Cow position: chr5:33570415-33570234 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 40

Conread position: 1082-1278
Cow position: chr5:70253231-70253033 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 32

Conread position: 1082-1279
Cow position: chr5:29029907-29029709 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 148, 32

Conread position: 1082-1280
Cow position: chr5:19298915-19299108 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 90

Conread position: 1082-1280
Cow position: chr5:47697825-47698021 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 161
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 107, 54

Conread position: 1082-1280
Cow position: chr5:51953441-51953242 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 162
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 50, 71

Conread position: 1082-1281
Cow position: chr5:9025745-9025545 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 105

Conread position: 1082-1281
Cow position: chr5:20717680-20717492 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 94, 0

Conread position: 1082-1281
Cow position: chr5:35749100-35748910 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 53, 80

Conread position: 1082-1282
Cow position: chr5:9585181-9585378 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 48, 118

Conread position: 1082-1282
Cow position: chr5:13575187-13575383 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 55, 115

Conread position: 1082-1282
Cow position: chr5:20648698-20648893 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 164
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 53, 110

Conread position: 1082-1282
Cow position: chr5:28770818-28770625 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 111, 0

Conread position: 1082-1282
Cow position: chr5:39118712-39118526 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 1082-1287
Cow position: chr5:53921990-53922189 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 32, 0

Conread position: 1082-1288
Cow position: chr5:12329127-12329332 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 50, 102

Conread position: 1082-1288
Cow position: chr5:63621111-63620913 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 114

Conread position: 1082-1289
Cow position: chr5:14072019-14072219 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 53, 93

Conread position: 1082-1289
Cow position: chr5:27679259-27679468 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 29

Conread position: 1082-1289
Cow position: chr5:57490719-57490512 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 139
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 112

Conread position: 1082-1289
Cow position: chr5:60969003-60968793 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 55, 77

Conread position: 1082-1289
Cow position: chr5:67463777-67463573 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 54, 149

Conread position: 1082-1291
Cow position: chr5:33516209-33516425 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 55, 0

Conread position: 1082-1292
Cow position: chr5:1304664-1304867 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 29, 36

Conread position: 1082-1292
Cow position: chr5:26562705-26562500 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 50, 90

Conread position: 1082-1293
Cow position: chr5:25355566-25355366 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 0

Conread position: 1082-1296
Cow position: chr5:18379805-18379604 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 53, 71

Conread position: 1082-1296
Cow position: chr5:21145663-21145877 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 121

Conread position: 1082-1296
Cow position: chr5:60725825-60725615 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 86

Conread position: 1082-1296
Cow position: chr5:71279216-71279003 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 76, 33

Conread position: 1083-1280
Cow position: chr5:1286929-1286730 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 47, 71

Conread position: 1083-1280
Cow position: chr5:23235029-23234841 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 49, 79

Conread position: 1083-1280
Cow position: chr5:56826607-56826411 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 23, 121

Conread position: 1087-1292
Cow position: chr5:12581253-12581066 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 92

Conread position: 1088-1237
Cow position: chr5:42587349-42587497 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 48, 90

Conread position: 1088-1277
Cow position: chr5:54158009-54157818 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 92, 117

Conread position: 1088-1280
Cow position: chr5:11403938-11404127 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 84

Conread position: 1088-1282
Cow position: chr5:51076066-51076259 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 105, 39

Conread position: 1088-1295
Cow position: chr5:39206738-39206940 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 36, 0

Conread position: 1088-1296
Cow position: chr5:56742212-56742011 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 50, 73

Conread position: 1094-1295
Cow position: chr5:26098127-26098323 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 70

Conread position: 1096-1281
Cow position: chr5:34482994-34483175 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 41, 107

Conread position: 1097-1292
Cow position: chr5:29431116-29431298 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 75

Conread position: 1100-1296
Cow position: chr5:56109607-56109809 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 32, 0

Conread position: 1103-1289
Cow position: chr5:15808375-15808560 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 152
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 29, 83

Conread position: 1107-1292
Cow position: chr5:57127990-57127812 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 57

Conread position: 1111-1277
Cow position: chr5:12610137-12609975 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 26, 55

Conread position: 1111-1281
Cow position: chr5:55933325-55933159 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 7

Conread position: 1134-1275
Cow position: chr5:48223788-48223916 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1152-1295
Cow position: chr5:25925380-25925519 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 1161-1282
Cow position: chr5:26161514-26161635 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 14

Conread position: 1169-1295
Cow position: chr5:53599576-53599696 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 89, 0

Show alignments to all cow chromosomes.