Cow genome map
| Conread name: | Ss1.1-Lng1-LNG010027H09.5 |
| Conread position: | 1081-1291 |
| Cow position: | chr6:31687612-31687814 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1082-1208 |
| Cow position: | chr6:24260227-24260354 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 1082-1249 |
| Cow position: | chr6:20748966-20748802 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1082-1263 |
| Cow position: | chr6:35832133-35831956 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 1082-1269 |
| Cow position: | chr6:50502175-50501993 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 1082-1274 |
| Cow position: | chr6:20332894-20332701 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 1082-1275 |
| Cow position: | chr6:19715665-19715851 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 48, 73 |
| Conread position: | 1082-1276 |
| Cow position: | chr6:27711217-27711019 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1082-1277 |
| Cow position: | chr6:55398377-55398193 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 105 |
| Conread position: | 1082-1279 |
| Cow position: | chr6:44389668-44389861 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1082-1280 |
| Cow position: | chr6:24496348-24496544 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 1082-1280 |
| Cow position: | chr6:40241263-40241072 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1082-1280 |
| Cow position: | chr6:53416375-53416579 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 1082-1280 |
| Cow position: | chr6:66677313-66677105 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 1082-1281 |
| Cow position: | chr6:14280240-14280038 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 56, 140 |
| Conread position: | 1082-1281 |
| Cow position: | chr6:55662315-55662116 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 1082-1282 |
| Cow position: | chr6:4665927-4666115 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 1082-1282 |
| Cow position: | chr6:35126533-35126722 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 1082-1282 |
| Cow position: | chr6:37085473-37085279 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 164, 109 |
| Conread position: | 1082-1282 |
| Cow position: | chr6:39917746-39917550 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 1082-1289 |
| Cow position: | chr6:3018049-3017846 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 1082-1289 |
| Cow position: | chr6:34557090-34556887 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 1082-1289 |
| Cow position: | chr6:44377852-44377646 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 1082-1289 |
| Cow position: | chr6:62328121-62327920 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 139, 102 |
| Conread position: | 1082-1295 |
| Cow position: | chr6:6635721-6635514 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1082-1295 |
| Cow position: | chr6:35697837-35698050 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 1082-1296 |
| Cow position: | chr6:29078307-29078100 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 209, 32 |
| Conread position: | 1083-1280 |
| Cow position: | chr6:45616856-45617042 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1086-1272 |
| Cow position: | chr6:5500486-5500672 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 91 |
| Conread position: | 1087-1295 |
| Cow position: | chr6:3373842-3374053 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 1088-1224 |
| Cow position: | chr6:58593571-58593705 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1088-1282 |
| Cow position: | chr6:6722722-6722527 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 1088-1289 |
| Cow position: | chr6:41558058-41557859 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 1088-1292 |
| Cow position: | chr6:43595970-43596173 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 1091-1282 |
| Cow position: | chr6:39293739-39293558 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 46 |
| Conread position: | 1092-1254 |
| Cow position: | chr6:1939919-1940086 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1100-1289 |
| Cow position: | chr6:33311668-33311485 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 1100-1293 |
| Cow position: | chr6:41157786-41157600 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 1101-1289 |
| Cow position: | chr6:62506919-62506731 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 170 |
| Conread position: | 1103-1289 |
| Cow position: | chr6:62753928-62754114 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 1107-1282 |
| Cow position: | chr6:1076860-1077036 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 1109-1292 |
| Cow position: | chr6:32428994-32428816 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 1111-1253 |
| Cow position: | chr6:3742025-3741895 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1112-1291 |
| Cow position: | chr6:66840422-66840242 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 1114-1296 |
| Cow position: | chr6:811852-812037 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1144-1252 |
| Cow position: | chr6:12808713-12808818 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.