Cow genome map

Conread name: Ss1.1-Lng1-LNG010027H09.5

Conread position: 1081-1257
Cow position: chrX:35552916-35552746 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 58, 5

Conread position: 1081-1279
Cow position: chrX:37749228-37749027 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 55, 5

Conread position: 1082-1226
Cow position: chrX:30785128-30784983 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 54, 139

Conread position: 1082-1255
Cow position: chrX:12227543-12227374 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 118, 0

Conread position: 1082-1258
Cow position: chrX:18518607-18518437 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 56, 106

Conread position: 1082-1271
Cow position: chrX:37957134-37956946 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 116

Conread position: 1082-1277
Cow position: chrX:37980952-37980767 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 25

Conread position: 1082-1281
Cow position: chrX:1330227-1330421 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 114

Conread position: 1082-1281
Cow position: chrX:4019350-4019555 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 148

Conread position: 1082-1281
Cow position: chrX:4590520-4590327 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 29, 106

Conread position: 1082-1282
Cow position: chrX:6472281-6472083 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 47

Conread position: 1082-1282
Cow position: chrX:6672350-6672151 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 55, 71

Conread position: 1082-1282
Cow position: chrX:37236573-37236380 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 163
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 54, 72

Conread position: 1082-1282
Cow position: chrX:40698792-40698616 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 1082-1289
Cow position: chrX:2186833-2186622 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 33, 119

Conread position: 1082-1289
Cow position: chrX:4625484-4625274 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 29

Conread position: 1082-1289
Cow position: chrX:20958150-20957935 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 19

Conread position: 1082-1289
Cow position: chrX:21816837-21816636 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 37, 32

Conread position: 1082-1289
Cow position: chrX:25453743-25453549 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 87

Conread position: 1082-1289
Cow position: chrX:32546473-32546262 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 133

Conread position: 1082-1289
Cow position: chrX:37137697-37137908 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 143

Conread position: 1082-1289
Cow position: chrX:40353883-40353675 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 115

Conread position: 1082-1295
Cow position: chrX:957060-956840 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 46, 157

Conread position: 1082-1295
Cow position: chrX:2147880-2147679 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 172
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 56, 29

Conread position: 1082-1295
Cow position: chrX:4440424-4440209 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1082-1295
Cow position: chrX:19017663-19017882 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 1082-1295
Cow position: chrX:20505277-20505069 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 110

Conread position: 1082-1296
Cow position: chrX:38891958-38892183 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 152

Conread position: 1083-1273
Cow position: chrX:23253646-23253828 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 54, 101

Conread position: 1083-1295
Cow position: chrX:11675642-11675432 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 81

Conread position: 1084-1255
Cow position: chrX:4947929-4948097 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 142
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 109, 0

Conread position: 1085-1289
Cow position: chrX:21885533-21885742 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 164
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 74, 0

Conread position: 1086-1282
Cow position: chrX:4630809-4631000 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 161
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 24

Conread position: 1088-1257
Cow position: chrX:44248674-44248835 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 44, 79

Conread position: 1088-1281
Cow position: chrX:5956769-5956959 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 21, 92

Conread position: 1088-1282
Cow position: chrX:9910193-9910378 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 159
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 76

Conread position: 1088-1289
Cow position: chrX:18699794-18699991 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 88

Conread position: 1088-1289
Cow position: chrX:25921238-25921418 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 6, 0

Conread position: 1088-1289
Cow position: chrX:27458167-27458365 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 162
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 51, 96

Conread position: 1090-1295
Cow position: chrX:18814735-18814529 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 28, 91

Conread position: 1091-1289
Cow position: chrX:19127073-19127268 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 24

Conread position: 1094-1233
Cow position: chrX:1427834-1427692 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 44, 0

Conread position: 1097-1289
Cow position: chrX:13403190-13403378 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 96, 0

Conread position: 1102-1281
Cow position: chrX:18468014-18467840 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 76

Conread position: 1103-1271
Cow position: chrX:11983143-11982978 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 33, 84

Conread position: 1105-1247
Cow position: chrX:16817196-16817058 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 33, 73

Conread position: 1107-1279
Cow position: chrX:43647207-43647378 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 29, 89

Conread position: 1113-1271
Cow position: chrX:40350446-40350293 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 25, 84

Conread position: 1134-1289
Cow position: chrX:4597194-4597350 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 133
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 57, 0

Conread position: 1134-1296
Cow position: chrX:4601126-4601282 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 1136-1282
Cow position: chrX:24951855-24951995 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 0

Conread position: 1137-1282
Cow position: chrX:41660671-41660520 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 24

Conread position: 1138-1282
Cow position: chrX:25106738-25106597 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 126
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 56, 0

Conread position: 1175-1282
Cow position: chrX:24286411-24286307 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 23, 0

Show alignments to all cow chromosomes.